HEADER OXIDOREDUCTASE 21-OCT-14 4WPZ TITLE CRYSTAL STRUCTURE OF CYTOCHROME P450 CYP107W1 FROM STREPTOMYCES TITLE 2 AVERMITILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 8-404; COMPND 5 SYNONYM: CYP107W1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 33903; SOURCE 4 GENE: OLMB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28A(+) KEYWDS P450, CYP, CYP107W1, STREPTOMYCES AVERMITILIS, OLIGOMYCIN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.W.KANG,D.H.KIM,T.V.PHAM,S.H.HAN REVDAT 2 29-APR-15 4WPZ 1 JRNL REVDAT 1 22-APR-15 4WPZ 0 JRNL AUTH S.HAN,T.V.PHAM,J.H.KIM,Y.R.LIM,H.G.PARK,G.S.CHA,C.H.YUN, JRNL AUTH 2 Y.J.CHUN,L.W.KANG,D.KIM JRNL TITL FUNCTIONAL CHARACTERIZATION OF CYP107W1 FROM STREPTOMYCES JRNL TITL 2 AVERMITILIS AND BIOSYNTHESIS OF MACROLIDE OLIGOMYCIN A. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 575 1 2015 JRNL REFN ESSN 1096-0384 JRNL PMID 25849761 JRNL DOI 10.1016/J.ABB.2015.03.025 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 29396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2124 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2982 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3086 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3033 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4218 ; 2.194 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6980 ; 1.013 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 6.076 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;37.289 ;24.141 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 519 ;17.050 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.279 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3449 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 639 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1546 ; 2.448 ; 2.478 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1545 ; 2.444 ; 2.477 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1929 ; 3.514 ; 3.700 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96418 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALEPACK REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KBR, PEG 2000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.52450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.43850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.43850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.28675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.43850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.43850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.76225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.43850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.43850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.28675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.43850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.43850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.76225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.52450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 69 REMARK 465 ALA A 70 REMARK 465 THR A 71 REMARK 465 ALA A 72 REMARK 465 ALA A 73 REMARK 465 ALA A 74 REMARK 465 ALA A 75 REMARK 465 MET A 76 REMARK 465 SER A 77 REMARK 465 GLU A 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 274 O HOH A 601 1.94 REMARK 500 OXT TRP A 404 O HOH A 602 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 25 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 395 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 395 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 34 -53.84 80.05 REMARK 500 PHE A 144 -62.05 -144.18 REMARK 500 TRP A 178 -42.19 110.96 REMARK 500 GLN A 180 73.20 -117.06 REMARK 500 ASN A 268 68.44 -168.52 REMARK 500 HIS A 352 127.67 -38.61 REMARK 500 CYS A 353 120.41 -39.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 287 OG1 REMARK 620 2 HOH A 749 O 108.3 REMARK 620 3 HOH A 760 O 77.9 99.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 503 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 353 SG REMARK 620 2 HEM A 503 NA 95.5 REMARK 620 3 HEM A 503 NB 88.7 89.3 REMARK 620 4 HEM A 503 NC 86.4 178.1 90.7 REMARK 620 5 HEM A 503 ND 93.8 90.7 177.5 89.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 674 O REMARK 620 2 HOH A 698 O 131.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WQ0 RELATED DB: PDB DBREF 4WPZ A 8 404 UNP Q93HJ0 Q93HJ0_STRAX 8 404 SEQRES 1 A 397 PRO ILE ALA PHE PRO PHE PRO ASP PRO PRO SER VAL CSD SEQRES 2 A 397 GLU LEU PRO PRO GLU LEU ALA GLU ILE ARG ASP GLY GLN SEQRES 3 A 397 SER VAL VAL GLU VAL LYS PHE PRO ASP GLY ILE SER GLY SEQRES 4 A 397 TRP MET VAL THR LYS HIS ALA ASP VAL ARG LYS VAL LEU SEQRES 5 A 397 VAL ASP SER ARG PHE SER SER LYS VAL MET ALA THR ALA SEQRES 6 A 397 ALA ALA ALA MET SER GLU THR GLU THR GLY LYS LEU MET SEQRES 7 A 397 ASN GLU SER LEU VAL GLY MET ASP ALA PRO GLU HIS THR SEQRES 8 A 397 ARG LEU ARG LYS LEU VAL THR LYS ALA PHE THR ALA ARG SEQRES 9 A 397 ARG VAL GLU THR LEU ARG PRO ARG ILE THR GLU LEU VAL SEQRES 10 A 397 GLY GLN LEU LEU ASP GLU LEU GLU THR LEU PRO ARG PRO SEQRES 11 A 397 VAL ASP LEU VAL LYS ASN PHE SER VAL PRO LEU PRO VAL SEQRES 12 A 397 ARG VAL ILE CYS GLU LEU LEU GLY VAL PRO ALA GLY ASP SEQRES 13 A 397 GLN ASP THR PHE HIS ALA TRP SER ASN ALA LEU LEU GLY SEQRES 14 A 397 ASP TRP GLN GLN VAL VAL GLU LYS GLU ALA ALA THR VAL SEQRES 15 A 397 SER LEU VAL ASN TYR PHE GLY GLU LEU ILE ALA VAL LYS SEQRES 16 A 397 ARG GLU ASN PRO ALA ASP ASP LEU ILE SER GLU LEU ILE SEQRES 17 A 397 ALA ILE SER ASP GLY ASP SER THR LEU THR GLU ARG GLU SEQRES 18 A 397 ILE ILE ALA LEU SER ILE GLY ILE LEU SER ALA GLY HIS SEQRES 19 A 397 GLU THR THR ALA ASN GLN ILE SER MET PHE LEU VAL THR SEQRES 20 A 397 LEU LEU HIS ASN PRO GLU GLU LEU ASP LYS LEU ARG ASP SEQRES 21 A 397 ASN ARG GLU ALA ILE PRO LYS ALA VAL ASP GLU LEU LEU SEQRES 22 A 397 ARG PHE VAL PRO LEU THR THR THR GLY GLY ILE ILE PRO SEQRES 23 A 397 ARG LEU THR THR ALA GLU VAL GLU LEU SER GLY GLY GLN SEQRES 24 A 397 VAL LEU PRO ALA GLY ALA VAL VAL LEU PRO ALA VAL ALA SEQRES 25 A 397 THR ALA ASN ARG ASP PRO GLU VAL PHE GLU ASP GLY GLU SEQRES 26 A 397 ARG LEU ASN VAL THR ARG GLU ASN ASN PRO HIS LEU ALA SEQRES 27 A 397 PHE GLY ALA GLY ILE HIS HIS CYS LEU GLY ALA GLN LEU SEQRES 28 A 397 ALA ARG ILE GLU LEU GLN GLU ALA LEU GLY ALA ILE LEU SEQRES 29 A 397 ASP ARG MET PRO GLN VAL ARG LEU ALA VAL PRO GLU SER SEQRES 30 A 397 GLU LEU ARG LEU LYS SER ALA SER ILE ILE ARG GLY LEU SEQRES 31 A 397 GLU SER LEU PRO ILE THR TRP MODRES 4WPZ CSD A 20 CYS MODIFIED RESIDUE HET CSD A 20 8 HET K A 501 1 HET K A 502 1 HET HEM A 503 43 HETNAM CSD 3-SULFINOALANINE HETNAM K POTASSIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN HEM HEME FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 K 2(K 1+) FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 HOH *306(H2 O) HELIX 1 AA1 PRO A 24 ASP A 31 1 8 HELIX 2 AA2 LYS A 51 ASP A 61 1 11 HELIX 3 AA3 GLU A 80 SER A 88 1 9 HELIX 4 AA4 LEU A 89 MET A 92 5 4 HELIX 5 AA5 PRO A 95 THR A 105 1 11 HELIX 6 AA6 THR A 109 LEU A 116 1 8 HELIX 7 AA7 LEU A 116 GLU A 132 1 17 HELIX 8 AA8 LEU A 140 PHE A 144 1 5 HELIX 9 AA9 VAL A 146 GLY A 158 1 13 HELIX 10 AB1 PRO A 160 GLY A 162 5 3 HELIX 11 AB2 ASP A 163 LEU A 175 1 13 HELIX 12 AB3 GLN A 180 ASN A 205 1 26 HELIX 13 AB4 ASP A 209 GLY A 220 1 12 HELIX 14 AB5 THR A 225 HIS A 241 1 17 HELIX 15 AB6 HIS A 241 HIS A 257 1 17 HELIX 16 AB7 ASN A 258 LYS A 264 1 7 HELIX 17 AB8 ASN A 268 GLU A 270 5 3 HELIX 18 AB9 ALA A 271 VAL A 283 1 13 HELIX 19 AC1 ALA A 317 ASN A 322 1 6 HELIX 20 AC2 ALA A 348 HIS A 352 5 5 HELIX 21 AC3 GLY A 355 MET A 374 1 20 HELIX 22 AC4 PRO A 382 LEU A 386 5 5 SHEET 1 AA1 6 ILE A 9 ALA A 10 0 SHEET 2 AA1 6 VAL A 35 LYS A 39 1 O LYS A 39 N ILE A 9 SHEET 3 AA1 6 SER A 45 VAL A 49 -1 O MET A 48 N VAL A 36 SHEET 4 AA1 6 VAL A 313 PRO A 316 1 O LEU A 315 N TRP A 47 SHEET 5 AA1 6 ARG A 294 THR A 296 -1 N ARG A 294 O VAL A 314 SHEET 6 AA1 6 PHE A 64 SER A 65 -1 N SER A 65 O LEU A 295 SHEET 1 AA2 3 VAL A 138 ASP A 139 0 SHEET 2 AA2 3 PRO A 401 THR A 403 -1 O ILE A 402 N VAL A 138 SHEET 3 AA2 3 ARG A 378 LEU A 379 -1 N ARG A 378 O THR A 403 SHEET 1 AA3 2 VAL A 300 GLU A 301 0 SHEET 2 AA3 2 VAL A 307 LEU A 308 -1 O LEU A 308 N VAL A 300 LINK C VAL A 19 N CSD A 20 1555 1555 1.34 LINK C CSD A 20 N GLU A 21 1555 1555 1.33 LINK OG1 THR A 287 K K A 501 1555 1555 2.92 LINK SG CYS A 353 FE HEM A 503 1555 1555 2.45 LINK K K A 501 O HOH A 749 1555 1555 2.92 LINK K K A 501 O HOH A 760 1555 1555 3.01 LINK K K A 502 O HOH A 674 1555 1555 3.15 LINK K K A 502 O HOH A 698 1555 1555 3.01 CISPEP 1 PHE A 11 PRO A 12 0 1.97 CISPEP 2 ALA A 94 PRO A 95 0 0.77 CISPEP 3 ARG A 136 PRO A 137 0 12.55 SITE 1 AC1 4 PHE A 13 THR A 287 HOH A 749 HOH A 760 SITE 1 AC2 2 LEU A 89 HOH A 698 SITE 1 AC3 23 LEU A 89 VAL A 90 HIS A 97 ARG A 101 SITE 2 AC3 23 PHE A 108 ALA A 239 GLY A 240 THR A 243 SITE 3 AC3 23 THR A 244 LEU A 285 ILE A 291 ARG A 294 SITE 4 AC3 23 ALA A 345 PHE A 346 HIS A 351 CYS A 353 SITE 5 AC3 23 LEU A 354 GLY A 355 HOH A 671 HOH A 696 SITE 6 AC3 23 HOH A 722 HOH A 750 HOH A 820 CRYST1 114.877 114.877 79.049 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012650 0.00000