HEADER OXIDOREDUCTASE/ANTIBIOTIC 21-OCT-14 4WQ0 TITLE CRYSTAL STRUCTURE OF CYTOCHROME P450 CYP107W1 FROM STREPTOMYCES TITLE 2 AVERMITILIS IN COMPLEX WITH OLIGOMYCIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 8-404; COMPND 5 SYNONYM: CYP107W1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 33903; SOURCE 4 GENE: OLMB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28A(+) KEYWDS P450, CYP, CYP107W1, STREPTOMYCES AVERMITILIS, OLIGOMYCIN, KEYWDS 2 OXIDOREDUCTASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.W.KANG,D.H.KIM,T.V.PHAM,S.H.HAN REVDAT 2 20-MAR-24 4WQ0 1 REMARK REVDAT 1 28-OCT-15 4WQ0 0 JRNL AUTH L.W.KANG,D.H.KIM,T.V.PHAM,S.H.HAN,J.H.KIM,Y.R.LIM,H.G.PARK, JRNL AUTH 2 G.S.CHA,C.H.YUN,Y.J.CHUN JRNL TITL CRYSTAL STRUCTURE OF CYTOCHROME P450 CYP107W1 FROM JRNL TITL 2 STREPTOMYCES AVERMITILIS IN COMPLEX WITH OLIGOMYCIN A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 16238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1061 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.4060 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.563 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.352 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.374 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3206 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3158 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4388 ; 1.915 ; 2.026 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7272 ; 0.877 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 8.259 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;37.557 ;24.186 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;19.101 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;20.473 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3547 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 651 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1587 ; 4.609 ; 7.679 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1586 ; 4.606 ; 7.678 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1982 ; 7.200 ;11.513 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALEPACK REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19627 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISOPROPANOL, AMMONIUM CITRATE, CITRIC REMARK 280 ACID, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.29200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.90600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.90600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.43800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.90600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.90600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.14600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.90600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.90600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.43800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.90600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.90600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.14600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.29200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 602 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 77 N THR A 79 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 34 -65.99 71.10 REMARK 500 ASP A 42 -57.69 125.41 REMARK 500 SER A 77 -89.02 -68.73 REMARK 500 GLU A 78 -24.93 31.68 REMARK 500 ALA A 94 -133.95 65.69 REMARK 500 ARG A 136 -156.89 37.86 REMARK 500 PHE A 144 -59.73 -144.19 REMARK 500 PRO A 160 176.09 -16.23 REMARK 500 ASP A 163 -17.31 66.20 REMARK 500 HIS A 168 -43.97 -29.76 REMARK 500 ASP A 177 38.46 -77.43 REMARK 500 TRP A 178 -27.38 58.36 REMARK 500 GLN A 180 66.51 -68.62 REMARK 500 ASN A 205 67.43 -162.74 REMARK 500 THR A 243 -81.97 3.71 REMARK 500 ASN A 258 66.95 -115.69 REMARK 500 ASN A 268 75.52 -153.44 REMARK 500 ALA A 317 75.34 -100.01 REMARK 500 ASN A 341 72.28 -155.72 REMARK 500 CYS A 353 121.36 -38.94 REMARK 500 ALA A 380 31.59 -68.00 REMARK 500 VAL A 381 155.54 65.87 REMARK 500 GLU A 383 -49.10 -28.36 REMARK 500 ARG A 387 120.03 71.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 41 ASP A 42 -145.47 REMARK 500 MET A 76 SER A 77 -49.17 REMARK 500 ASP A 93 ALA A 94 144.31 REMARK 500 ALA A 161 GLY A 162 135.72 REMARK 500 VAL A 381 PRO A 382 -30.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 353 SG REMARK 620 2 HEM A 501 NA 94.4 REMARK 620 3 HEM A 501 NB 87.5 91.0 REMARK 620 4 HEM A 501 NC 84.5 178.9 89.1 REMARK 620 5 HEM A 501 ND 93.6 88.6 178.9 91.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFO A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WPZ RELATED DB: PDB DBREF 4WQ0 A 8 404 UNP Q93HJ0 Q93HJ0_STRAX 8 404 SEQRES 1 A 397 PRO ILE ALA PHE PRO PHE PRO ASP PRO PRO SER VAL CYS SEQRES 2 A 397 GLU LEU PRO PRO GLU LEU ALA GLU ILE ARG ASP GLY GLN SEQRES 3 A 397 SER VAL VAL GLU VAL LYS PHE PRO ASP GLY ILE SER GLY SEQRES 4 A 397 TRP MET VAL THR LYS HIS ALA ASP VAL ARG LYS VAL LEU SEQRES 5 A 397 VAL ASP SER ARG PHE SER SER LYS VAL MET ALA THR ALA SEQRES 6 A 397 ALA ALA ALA MET SER GLU THR GLU THR GLY LYS LEU MET SEQRES 7 A 397 ASN GLU SER LEU VAL GLY MET ASP ALA PRO GLU HIS THR SEQRES 8 A 397 ARG LEU ARG LYS LEU VAL THR LYS ALA PHE THR ALA ARG SEQRES 9 A 397 ARG VAL GLU THR LEU ARG PRO ARG ILE THR GLU LEU VAL SEQRES 10 A 397 GLY GLN LEU LEU ASP GLU LEU GLU THR LEU PRO ARG PRO SEQRES 11 A 397 VAL ASP LEU VAL LYS ASN PHE SER VAL PRO LEU PRO VAL SEQRES 12 A 397 ARG VAL ILE CYS GLU LEU LEU GLY VAL PRO ALA GLY ASP SEQRES 13 A 397 GLN ASP THR PHE HIS ALA TRP SER ASN ALA LEU LEU GLY SEQRES 14 A 397 ASP TRP GLN GLN VAL VAL GLU LYS GLU ALA ALA THR VAL SEQRES 15 A 397 SER LEU VAL ASN TYR PHE GLY GLU LEU ILE ALA VAL LYS SEQRES 16 A 397 ARG GLU ASN PRO ALA ASP ASP LEU ILE SER GLU LEU ILE SEQRES 17 A 397 ALA ILE SER ASP GLY ASP SER THR LEU THR GLU ARG GLU SEQRES 18 A 397 ILE ILE ALA LEU SER ILE GLY ILE LEU SER ALA GLY HIS SEQRES 19 A 397 GLU THR THR ALA ASN GLN ILE SER MET PHE LEU VAL THR SEQRES 20 A 397 LEU LEU HIS ASN PRO GLU GLU LEU ASP LYS LEU ARG ASP SEQRES 21 A 397 ASN ARG GLU ALA ILE PRO LYS ALA VAL ASP GLU LEU LEU SEQRES 22 A 397 ARG PHE VAL PRO LEU THR THR THR GLY GLY ILE ILE PRO SEQRES 23 A 397 ARG LEU THR THR ALA GLU VAL GLU LEU SER GLY GLY GLN SEQRES 24 A 397 VAL LEU PRO ALA GLY ALA VAL VAL LEU PRO ALA VAL ALA SEQRES 25 A 397 THR ALA ASN ARG ASP PRO GLU VAL PHE GLU ASP GLY GLU SEQRES 26 A 397 ARG LEU ASN VAL THR ARG GLU ASN ASN PRO HIS LEU ALA SEQRES 27 A 397 PHE GLY ALA GLY ILE HIS HIS CYS LEU GLY ALA GLN LEU SEQRES 28 A 397 ALA ARG ILE GLU LEU GLN GLU ALA LEU GLY ALA ILE LEU SEQRES 29 A 397 ASP ARG MET PRO GLN VAL ARG LEU ALA VAL PRO GLU SER SEQRES 30 A 397 GLU LEU ARG LEU LYS SER ALA SER ILE ILE ARG GLY LEU SEQRES 31 A 397 GLU SER LEU PRO ILE THR TRP HET HEM A 501 43 HET EFO A 502 56 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EFO OLIGOMYCIN A HETSYN HEM HEME HETSYN EFO (1R,4E,5'S,6S,6'S,7R,8S,10R,11R,12S,14R,15S,16R,18E, HETSYN 2 EFO 20E,22R,25S,27R,28S,29R)-22-ETHYL-7,11,14,15- HETSYN 3 EFO TETRAHYDROXY-6'-[(2R)-2-HYDROXYPROPYL]-5',6,8,10,12, HETSYN 4 EFO 14,16,28,29-NONAMETHYL-3',4',5',6'-TETRAHYDRO-3H,9H, HETSYN 5 EFO 13H-SPIRO[2,26-DIOXABICYCLO[23.3.1]NONACOSA-4,18,20- HETSYN 6 EFO TRIENE-27,2'-PYRAN]-3,9,13-TRIONE FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 EFO C45 H74 O11 FORMUL 4 HOH *15(H2 O) HELIX 1 AA1 PRO A 24 GLY A 32 1 9 HELIX 2 AA2 LYS A 51 ASP A 61 1 11 HELIX 3 AA3 MET A 69 SER A 77 1 9 HELIX 4 AA4 THR A 79 SER A 88 1 10 HELIX 5 AA5 ASP A 93 LYS A 106 1 14 HELIX 6 AA6 THR A 109 GLU A 132 1 24 HELIX 7 AA7 LEU A 140 PHE A 144 1 5 HELIX 8 AA8 PRO A 147 GLY A 158 1 12 HELIX 9 AA9 ASP A 163 GLY A 176 1 14 HELIX 10 AB1 GLN A 180 ASN A 205 1 26 HELIX 11 AB2 ASP A 209 GLY A 220 1 12 HELIX 12 AB3 THR A 225 ASN A 258 1 34 HELIX 13 AB4 ASN A 258 ASP A 263 1 6 HELIX 14 AB5 LYS A 264 ARG A 266 5 3 HELIX 15 AB6 ASN A 268 GLU A 270 5 3 HELIX 16 AB7 ALA A 271 VAL A 283 1 13 HELIX 17 AB8 ALA A 317 ASN A 322 1 6 HELIX 18 AB9 ALA A 348 HIS A 352 5 5 HELIX 19 AC1 GLY A 355 MET A 374 1 20 HELIX 20 AC2 PRO A 382 LEU A 386 5 5 SHEET 1 AA1 6 ILE A 9 ALA A 10 0 SHEET 2 AA1 6 VAL A 35 LYS A 39 1 O LYS A 39 N ILE A 9 SHEET 3 AA1 6 SER A 45 VAL A 49 -1 O GLY A 46 N VAL A 38 SHEET 4 AA1 6 VAL A 313 PRO A 316 1 O LEU A 315 N TRP A 47 SHEET 5 AA1 6 ARG A 294 THR A 296 -1 N ARG A 294 O VAL A 314 SHEET 6 AA1 6 PHE A 64 SER A 65 -1 N SER A 65 O LEU A 295 SHEET 1 AA2 3 VAL A 138 ASP A 139 0 SHEET 2 AA2 3 PRO A 401 THR A 403 -1 O ILE A 402 N VAL A 138 SHEET 3 AA2 3 ARG A 378 LEU A 379 -1 N ARG A 378 O THR A 403 SHEET 1 AA3 2 VAL A 300 GLU A 301 0 SHEET 2 AA3 2 VAL A 307 LEU A 308 -1 O LEU A 308 N VAL A 300 LINK SG CYS A 353 FE HEM A 501 1555 1555 2.09 CISPEP 1 PHE A 11 PRO A 12 0 -0.31 CISPEP 2 PRO A 160 ALA A 161 0 -17.16 CISPEP 3 ALA A 391 SER A 392 0 28.72 SITE 1 AC1 18 LEU A 89 VAL A 90 HIS A 97 ARG A 101 SITE 2 AC1 18 PHE A 108 ILE A 236 ALA A 239 GLY A 240 SITE 3 AC1 18 THR A 243 THR A 244 GLY A 289 ILE A 291 SITE 4 AC1 18 ARG A 294 ALA A 345 PHE A 346 HIS A 351 SITE 5 AC1 18 CYS A 353 GLY A 355 SITE 1 AC2 7 PHE A 40 MET A 69 THR A 71 MET A 76 SITE 2 AC2 7 MET A 85 TRP A 178 THR A 288 CRYST1 127.812 127.812 76.584 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007824 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013058 0.00000