HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-OCT-14 4WQL TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE NUCLEOTIDYLYLTRANSFERASE ANT(2")- TITLE 2 IA, KANAMYCIN-BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2''-AMINOGLYCOSIDE NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AAD(2''),GENTAMICIN 2''-NUCLEOTIDYLTRANSFERASE,GENTAMICIN COMPND 5 RESISTANCE PROTEIN; COMPND 6 EC: 2.7.7.46; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: AADB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS ANTIBIOTIC RESISTANCE, AMINOGLYCOSIDES, KANAMYCIN, KEYWDS 2 NUCLEOTIDYLYLTRANSFERASE, ADENYLYLTRANSFERASE, KEYWDS 3 NUCLEOTIDYLTRANSFERASE FOLD, ALPHA/BETA PROTEIN, STRUCTURAL KEYWDS 4 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 5 CSGID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, NIAID, KEYWDS 6 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.COX,P.J.STOGIOS,A.SAVCHENKO,G.D.WRIGHT,W.F.ANDERSON,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 6 27-DEC-23 4WQL 1 REMARK LINK REVDAT 5 08-JAN-20 4WQL 1 REMARK REVDAT 4 22-FEB-17 4WQL 1 AUTHOR REVDAT 3 28-JAN-15 4WQL 1 JRNL REVDAT 2 24-DEC-14 4WQL 1 REMARK REVDAT 1 12-NOV-14 4WQL 0 JRNL AUTH G.COX,P.J.STOGIOS,A.SAVCHENKO,G.D.WRIGHT JRNL TITL STRUCTURAL AND MOLECULAR BASIS FOR RESISTANCE TO JRNL TITL 2 AMINOGLYCOSIDE ANTIBIOTICS BY THE ADENYLYLTRANSFERASE JRNL TITL 3 ANT(2)-IA. JRNL REF MBIO V. 6 2015 JRNL REFN ESSN 2150-7511 JRNL PMID 25564464 JRNL DOI 10.1128/MBIO.02180-14 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 35415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4650 - 4.0613 1.00 2584 146 0.1436 0.1408 REMARK 3 2 4.0613 - 3.2263 1.00 2595 141 0.1132 0.1757 REMARK 3 3 3.2263 - 2.8192 1.00 2574 138 0.1317 0.1356 REMARK 3 4 2.8192 - 2.5618 1.00 2629 139 0.1381 0.1570 REMARK 3 5 2.5618 - 2.3784 1.00 2602 122 0.1427 0.2577 REMARK 3 6 2.3784 - 2.2383 1.00 2637 132 0.1428 0.1733 REMARK 3 7 2.2383 - 2.1262 1.00 2569 141 0.1431 0.2238 REMARK 3 8 2.1262 - 2.0337 1.00 2638 130 0.1525 0.1907 REMARK 3 9 2.0337 - 1.9555 0.99 2574 142 0.1771 0.2054 REMARK 3 10 1.9555 - 1.8880 0.99 2546 140 0.1749 0.2174 REMARK 3 11 1.8880 - 1.8290 0.99 2574 127 0.2034 0.2640 REMARK 3 12 1.8290 - 1.7768 0.99 2556 147 0.2400 0.2818 REMARK 3 13 1.7768 - 1.7300 0.97 2553 139 0.2840 0.3307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 1512 REMARK 3 ANGLE : 1.668 2055 REMARK 3 CHIRALITY : 0.101 223 REMARK 3 PLANARITY : 0.008 258 REMARK 3 DIHEDRAL : 13.553 555 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:61) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3559 3.0269 16.6624 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.1068 REMARK 3 T33: 0.0916 T12: 0.0063 REMARK 3 T13: -0.0014 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.2890 L22: 4.3008 REMARK 3 L33: 2.5549 L12: 0.9401 REMARK 3 L13: -0.5451 L23: -0.5272 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: 0.0213 S13: 0.1220 REMARK 3 S21: -0.0673 S22: -0.0104 S23: 0.1597 REMARK 3 S31: -0.0637 S32: -0.0773 S33: -0.0343 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 62:82) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3963 -1.5676 13.7772 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.2187 REMARK 3 T33: 0.2459 T12: 0.0032 REMARK 3 T13: -0.0104 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 6.5487 L22: 4.3975 REMARK 3 L33: 7.0433 L12: -2.2610 REMARK 3 L13: -2.8524 L23: 5.2597 REMARK 3 S TENSOR REMARK 3 S11: 0.0443 S12: 0.2451 S13: -0.2057 REMARK 3 S21: -0.2908 S22: -0.3108 S23: 0.6448 REMARK 3 S31: -0.2041 S32: -0.5759 S33: 0.3539 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 83:136) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7806 -3.0593 10.1776 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.1242 REMARK 3 T33: 0.1292 T12: 0.0052 REMARK 3 T13: 0.0111 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.2891 L22: 1.8720 REMARK 3 L33: 1.7225 L12: -0.0394 REMARK 3 L13: -0.0790 L23: 0.3809 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: 0.0014 S13: 0.0048 REMARK 3 S21: -0.0444 S22: -0.0364 S23: 0.0234 REMARK 3 S31: 0.0789 S32: 0.0185 S33: 0.0282 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 137:152) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0783 5.9294 -6.2374 REMARK 3 T TENSOR REMARK 3 T11: 0.2641 T22: 0.2207 REMARK 3 T33: 0.2282 T12: 0.0013 REMARK 3 T13: -0.0486 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 5.3018 L22: 4.2222 REMARK 3 L33: 8.3381 L12: -0.3814 REMARK 3 L13: 1.5549 L23: 5.5888 REMARK 3 S TENSOR REMARK 3 S11: 0.2396 S12: 0.2325 S13: -0.3151 REMARK 3 S21: -0.4976 S22: -0.1969 S23: 0.5224 REMARK 3 S31: 0.0280 S32: -0.7319 S33: 0.0077 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 153:177) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0112 -1.8428 -4.3733 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.1592 REMARK 3 T33: 0.0878 T12: 0.0204 REMARK 3 T13: 0.0122 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 4.8360 L22: 2.9150 REMARK 3 L33: 2.6859 L12: 2.0343 REMARK 3 L13: -0.6428 L23: 1.8421 REMARK 3 S TENSOR REMARK 3 S11: -0.0959 S12: 0.1702 S13: -0.1507 REMARK 3 S21: -0.5819 S22: 0.1367 S23: -0.3405 REMARK 3 S31: -0.1899 S32: 0.1202 S33: -0.0487 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.548 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35472 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 33.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: APOPROTEIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MG/ML PROTEIN, 10% 2-PROPANOL, 20% REMARK 280 PEG 4K, 0.1 M HEPES PH 7.5, 15 MM KANAMYCIN B (5:1 MOLAR RATIO REMARK 280 KANAMYCIN B:PROTEIN), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.00500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 94 -47.78 69.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 ASP A 46 OD2 102.6 REMARK 620 3 HOH A 491 O 82.7 83.9 REMARK 620 4 HOH A 492 O 167.2 82.3 86.2 REMARK 620 5 HOH A 495 O 92.1 165.2 98.5 83.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 ASP A 44 OD2 45.8 REMARK 620 3 ASP A 46 OD1 86.3 106.5 REMARK 620 4 ASP A 86 OD2 129.5 94.3 76.6 REMARK 620 5 KAN A 203 O13 149.8 148.4 102.6 80.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KAN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP92558 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4WQK RELATED DB: PDB REMARK 900 APO FORM DBREF 4WQL A 1 177 UNP P0AE05 AADB1_KLEPN 1 177 SEQADV 4WQL GLY A 0 UNP P0AE05 EXPRESSION TAG SEQRES 1 A 178 GLY MET ASP THR THR GLN VAL THR LEU ILE HIS LYS ILE SEQRES 2 A 178 LEU ALA ALA ALA ASP GLU ARG ASN LEU PRO LEU TRP ILE SEQRES 3 A 178 GLY GLY GLY TRP ALA ILE ASP ALA ARG LEU GLY ARG VAL SEQRES 4 A 178 THR ARG LYS HIS ASP ASP ILE ASP LEU THR PHE PRO GLY SEQRES 5 A 178 GLU ARG ARG GLY GLU LEU GLU ALA ILE VAL GLU MET LEU SEQRES 6 A 178 GLY GLY ARG VAL MET GLU GLU LEU ASP TYR GLY PHE LEU SEQRES 7 A 178 ALA GLU ILE GLY ASP GLU LEU LEU ASP CYS GLU PRO ALA SEQRES 8 A 178 TRP TRP ALA ASP GLU ALA TYR GLU ILE ALA GLU ALA PRO SEQRES 9 A 178 GLN GLY SER CYS PRO GLU ALA ALA GLU GLY VAL ILE ALA SEQRES 10 A 178 GLY ARG PRO VAL ARG CYS ASN SER TRP GLU ALA ILE ILE SEQRES 11 A 178 TRP ASP TYR PHE TYR TYR ALA ASP GLU VAL PRO PRO VAL SEQRES 12 A 178 ASP TRP PRO THR LYS HIS ILE GLU SER TYR ARG LEU ALA SEQRES 13 A 178 CYS THR SER LEU GLY ALA GLU LYS VAL GLU VAL LEU ARG SEQRES 14 A 178 ALA ALA PHE ARG SER ARG TYR ALA ALA HET MG A 201 1 HET MG A 202 1 HET KAN A 203 33 HET IPA A 204 8 HET IPA A 205 4 HET IPA A 206 4 HET IPA A 207 4 HET IPA A 208 4 HET IPA A 209 4 HET GOL A 210 6 HET GOL A 211 6 HET GOL A 212 6 HET GOL A 213 6 HETNAM MG MAGNESIUM ION HETNAM KAN KANAMYCIN A HETNAM IPA ISOPROPYL ALCOHOL HETNAM GOL GLYCEROL HETSYN IPA 2-PROPANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 2(MG 2+) FORMUL 4 KAN C18 H36 N4 O11 FORMUL 5 IPA 6(C3 H8 O) FORMUL 11 GOL 4(C3 H8 O3) FORMUL 15 HOH *236(H2 O) HELIX 1 AA1 THR A 3 ARG A 19 1 17 HELIX 2 AA2 GLY A 26 GLY A 36 1 11 HELIX 3 AA3 ARG A 53 LEU A 64 1 12 HELIX 4 AA4 SER A 124 VAL A 139 1 16 HELIX 5 AA5 PRO A 140 TRP A 144 5 5 HELIX 6 AA6 PRO A 145 GLY A 160 1 16 HELIX 7 AA7 GLY A 160 ALA A 176 1 17 SHEET 1 AA1 5 TRP A 24 ILE A 25 0 SHEET 2 AA1 5 ILE A 45 PRO A 50 -1 O THR A 48 N TRP A 24 SHEET 3 AA1 5 GLU A 83 TRP A 92 1 O ASP A 86 N ILE A 45 SHEET 4 AA1 5 PHE A 76 ILE A 80 -1 N ALA A 78 O LEU A 85 SHEET 5 AA1 5 ARG A 67 GLU A 71 -1 N GLU A 70 O LEU A 77 SHEET 1 AA2 4 TRP A 24 ILE A 25 0 SHEET 2 AA2 4 ILE A 45 PRO A 50 -1 O THR A 48 N TRP A 24 SHEET 3 AA2 4 GLU A 83 TRP A 92 1 O ASP A 86 N ILE A 45 SHEET 4 AA2 4 TYR A 97 GLU A 98 -1 O GLU A 98 N TRP A 91 SHEET 1 AA3 2 GLY A 113 ILE A 115 0 SHEET 2 AA3 2 ARG A 118 VAL A 120 -1 O VAL A 120 N GLY A 113 LINK OD1 ASP A 44 MG MG A 201 1555 1555 2.15 LINK OD1 ASP A 44 MG MG A 202 1555 1555 2.92 LINK OD2 ASP A 44 MG MG A 202 1555 1555 2.55 LINK OD2 ASP A 46 MG MG A 201 1555 1555 2.06 LINK OD1 ASP A 46 MG MG A 202 1555 1555 2.35 LINK OD2 ASP A 86 MG MG A 202 1555 1555 2.59 LINK MG MG A 201 O HOH A 491 1555 1555 1.89 LINK MG MG A 201 O HOH A 492 1555 1555 2.17 LINK MG MG A 201 O HOH A 495 1555 1555 2.22 LINK MG MG A 202 O13 KAN A 203 1555 1555 2.60 SITE 1 AC1 6 ASP A 44 ASP A 46 MG A 202 HOH A 491 SITE 2 AC1 6 HOH A 492 HOH A 495 SITE 1 AC2 5 ASP A 44 ASP A 46 ASP A 86 MG A 201 SITE 2 AC2 5 KAN A 203 SITE 1 AC3 17 ASP A 44 ASP A 46 TYR A 74 ASP A 86 SITE 2 AC3 17 GLU A 88 ILE A 99 ALA A 100 ASP A 131 SITE 3 AC3 17 TYR A 134 GLU A 138 MG A 202 GOL A 213 SITE 4 AC3 17 HOH A 421 HOH A 426 HOH A 478 HOH A 529 SITE 5 AC3 17 HOH A 534 SITE 1 AC4 6 GLY A 28 ARG A 40 HIS A 42 ASP A 43 SITE 2 AC4 6 HOH A 491 HOH A 508 SITE 1 AC5 3 GLU A 109 HOH A 316 HOH A 493 SITE 1 AC6 2 PHE A 133 TYR A 152 SITE 1 AC7 2 GLU A 95 GLU A 109 SITE 1 AC8 5 VAL A 166 HOH A 355 HOH A 418 HOH A 440 SITE 2 AC8 5 HOH A 506 SITE 1 AC9 3 GLU A 52 TRP A 91 HOH A 513 SITE 1 AD1 4 GLU A 79 GLY A 81 ASP A 82 HOH A 343 SITE 1 AD2 12 GLY A 26 GLY A 27 GLU A 88 ILE A 99 SITE 2 AD2 12 ASN A 123 ILE A 128 ASP A 131 KAN A 203 SITE 3 AD2 12 HOH A 417 HOH A 419 HOH A 446 HOH A 526 CRYST1 45.460 42.010 47.810 90.00 105.25 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021997 0.000000 0.005997 0.00000 SCALE2 0.000000 0.023804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021680 0.00000