HEADER TRANSCRIPTION 22-OCT-14 4WQO TITLE STRUCTURE OF VHL-ELOB-ELOC-CUL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN G7,PVHL; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ELONGIN 18 KDA SUBUNIT,ELONGIN-B,ELOB,RNA POLYMERASE II COMPND 10 TRANSCRIPTION FACTOR SIII SUBUNIT B,SIII P18; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: UNP RESIDUES 17-112; COMPND 16 SYNONYM: ELONGIN 15 KDA SUBUNIT,ELONGIN-C,ELOC,RNA POLYMERASE II COMPND 17 TRANSCRIPTION FACTOR SIII SUBUNIT C,SIII P15; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: CULLIN-2; COMPND 21 CHAIN: D; COMPND 22 FRAGMENT: UNP RESIDUES 20-122; COMPND 23 SYNONYM: CUL-2; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VHL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TCEB2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: TCEB1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: CUL2; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3 LIGASE COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.C.NGUYEN,Y.XIONG REVDAT 4 27-SEP-23 4WQO 1 REMARK REVDAT 3 22-NOV-17 4WQO 1 SOURCE JRNL REMARK REVDAT 2 11-MAR-15 4WQO 1 JRNL REVDAT 1 04-MAR-15 4WQO 0 JRNL AUTH H.C.NGUYEN,H.YANG,J.L.FRIBOURGH,L.S.WOLFE,Y.XIONG JRNL TITL INSIGHTS INTO CULLIN-RING E3 UBIQUITIN LIGASE RECRUITMENT: JRNL TITL 2 STRUCTURE OF THE VHL-ELOBC-CUL2 COMPLEX. JRNL REF STRUCTURE V. 23 441 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25661653 JRNL DOI 10.1016/J.STR.2014.12.014 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3022 - 6.3958 0.99 3059 170 0.1776 0.2024 REMARK 3 2 6.3958 - 5.0783 1.00 2949 152 0.2195 0.2478 REMARK 3 3 5.0783 - 4.4369 0.98 2903 130 0.1914 0.2294 REMARK 3 4 4.4369 - 4.0315 0.98 2843 140 0.2136 0.2485 REMARK 3 5 4.0315 - 3.7426 0.98 2833 132 0.2693 0.3174 REMARK 3 6 3.7426 - 3.5220 0.99 2866 157 0.3050 0.3408 REMARK 3 7 3.5220 - 3.3457 0.99 2843 140 0.3287 0.3385 REMARK 3 8 3.3457 - 3.2001 1.00 2860 142 0.3556 0.3979 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3993 REMARK 3 ANGLE : 1.774 5421 REMARK 3 CHIRALITY : 0.076 610 REMARK 3 PLANARITY : 0.011 695 REMARK 3 DIHEDRAL : 15.250 1493 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -50.8489 -7.0025 -38.0830 REMARK 3 T TENSOR REMARK 3 T11: 1.4000 T22: 0.7384 REMARK 3 T33: 1.0771 T12: 0.8964 REMARK 3 T13: -0.3513 T23: -0.2005 REMARK 3 L TENSOR REMARK 3 L11: 0.0559 L22: 0.1544 REMARK 3 L33: 0.2171 L12: -0.0656 REMARK 3 L13: 0.0927 L23: -0.1431 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.1378 S13: -0.0408 REMARK 3 S21: 0.4054 S22: 0.1373 S23: 0.2014 REMARK 3 S31: -0.0536 S32: 0.1396 S33: 0.1017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -32.2460 15.3825 -65.0636 REMARK 3 T TENSOR REMARK 3 T11: 1.2993 T22: 1.2922 REMARK 3 T33: 1.1541 T12: 0.0138 REMARK 3 T13: 0.0388 T23: -0.1907 REMARK 3 L TENSOR REMARK 3 L11: 0.0687 L22: 0.0561 REMARK 3 L33: 0.0378 L12: -0.0238 REMARK 3 L13: 0.0552 L23: -0.0435 REMARK 3 S TENSOR REMARK 3 S11: -0.1775 S12: 0.3136 S13: 0.2736 REMARK 3 S21: 0.1188 S22: 0.3366 S23: -0.2822 REMARK 3 S31: -0.4759 S32: 0.3112 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -49.1261 12.5729 -58.7693 REMARK 3 T TENSOR REMARK 3 T11: 1.2079 T22: 0.7388 REMARK 3 T33: 0.8988 T12: 0.2743 REMARK 3 T13: -0.1707 T23: -0.0941 REMARK 3 L TENSOR REMARK 3 L11: 0.0723 L22: 0.0733 REMARK 3 L33: 0.0676 L12: 0.0655 REMARK 3 L13: -0.0544 L23: -0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.1809 S12: 0.1125 S13: -0.1252 REMARK 3 S21: -0.0518 S22: 0.3877 S23: -0.3050 REMARK 3 S31: -0.2957 S32: 0.0684 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): -75.9941 15.2847 -60.7844 REMARK 3 T TENSOR REMARK 3 T11: 1.4524 T22: 1.1231 REMARK 3 T33: 0.7060 T12: 0.4710 REMARK 3 T13: -0.1485 T23: -0.1482 REMARK 3 L TENSOR REMARK 3 L11: 0.6390 L22: 0.0593 REMARK 3 L33: 0.1675 L12: 0.2151 REMARK 3 L13: -0.1514 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: -0.4640 S12: 0.7333 S13: 0.4047 REMARK 3 S21: 0.1453 S22: 0.1930 S23: -0.1727 REMARK 3 S31: -0.2886 S32: -0.3367 S33: -0.0373 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24321 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1LM8 AND 2WZK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M NA FORMATE, MICROBATCH, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.51200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.25600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.25600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 142.51200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 TRP A 8 REMARK 465 ASP A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 GLU A 12 REMARK 465 VAL A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 GLU A 16 REMARK 465 GLU A 17 REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 465 VAL A 20 REMARK 465 GLU A 21 REMARK 465 GLU A 22 REMARK 465 TYR A 23 REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 GLU A 36 REMARK 465 GLU A 37 REMARK 465 SER A 38 REMARK 465 GLY A 39 REMARK 465 PRO A 40 REMARK 465 GLU A 41 REMARK 465 GLU A 42 REMARK 465 SER A 43 REMARK 465 GLY A 44 REMARK 465 PRO A 45 REMARK 465 GLU A 46 REMARK 465 GLU A 47 REMARK 465 LEU A 48 REMARK 465 GLY A 49 REMARK 465 ALA A 50 REMARK 465 GLU A 51 REMARK 465 GLU A 52 REMARK 465 GLU A 53 REMARK 465 MET A 54 REMARK 465 GLU A 55 REMARK 465 ALA A 56 REMARK 465 GLY A 57 REMARK 465 ARG A 58 REMARK 465 PRO A 59 REMARK 465 HIS A 208 REMARK 465 GLN A 209 REMARK 465 ARG A 210 REMARK 465 MET A 211 REMARK 465 GLY A 212 REMARK 465 ASP A 213 REMARK 465 PRO B 105 REMARK 465 GLN B 106 REMARK 465 ASP B 107 REMARK 465 SER B 108 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 SER B 111 REMARK 465 ALA B 112 REMARK 465 ASN B 113 REMARK 465 GLU B 114 REMARK 465 GLN B 115 REMARK 465 ALA B 116 REMARK 465 VAL B 117 REMARK 465 GLN B 118 REMARK 465 MET D -22 REMARK 465 GLY D -21 REMARK 465 SER D -20 REMARK 465 SER D -19 REMARK 465 HIS D -18 REMARK 465 HIS D -17 REMARK 465 HIS D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 SER D -12 REMARK 465 GLN D -11 REMARK 465 ASP D -10 REMARK 465 PRO D -9 REMARK 465 THR D -8 REMARK 465 THR D -7 REMARK 465 VAL D -6 REMARK 465 LYS D -5 REMARK 465 LEU D -4 REMARK 465 GLN D -3 REMARK 465 ALA D -2 REMARK 465 GLY D -1 REMARK 465 PHE D 0 REMARK 465 LYS D 117 REMARK 465 LEU D 118 REMARK 465 THR D 119 REMARK 465 GLU D 120 REMARK 465 ALA D 121 REMARK 465 ASP D 122 REMARK 465 LEU D 123 REMARK 465 GLN D 124 REMARK 465 TYR D 125 REMARK 465 GLY D 126 REMARK 465 TYR D 127 REMARK 465 GLY D 128 REMARK 465 GLY D 129 REMARK 465 VAL D 130 REMARK 465 ASP D 131 REMARK 465 MET D 132 REMARK 465 ASN D 133 REMARK 465 GLU D 134 REMARK 465 ILE D 160 REMARK 465 ARG D 161 REMARK 465 MET D 162 REMARK 465 LEU D 163 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 142 CG1 CG2 REMARK 470 ASP A 143 CG OD1 OD2 REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 ILE A 147 CG1 CG2 CD1 REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 82 CG OD1 OD2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 470 THR B 84 OG1 CG2 REMARK 470 PHE B 85 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 GLN C 51 CG CD OE1 NE2 REMARK 470 PHE C 52 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 54 CG CD OE1 OE2 REMARK 470 ASN C 55 CG OD1 ND2 REMARK 470 GLU C 56 CG CD OE1 OE2 REMARK 470 VAL D 30 CG1 CG2 REMARK 470 GLU D 80 CG CD OE1 OE2 REMARK 470 GLU D 81 CG CD OE1 OE2 REMARK 470 GLN D 82 CG CD OE1 NE2 REMARK 470 VAL D 83 CG1 CG2 REMARK 470 LEU D 144 CG CD1 CD2 REMARK 470 MET D 151 CG SD CE REMARK 470 GLU D 153 CG CD OE1 OE2 REMARK 470 GLN D 156 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 68 O ARG A 113 2.02 REMARK 500 NH1 ARG A 120 O HIS A 125 2.11 REMARK 500 OD2 ASP A 179 NZ LYS D 4 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 154 C - N - CA ANGL. DEV. = -15.0 DEGREES REMARK 500 PRO B 39 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 69 21.82 -67.51 REMARK 500 ARG A 79 47.75 -103.98 REMARK 500 SER A 111 -162.30 -116.96 REMARK 500 HIS B 10 75.06 48.99 REMARK 500 ALA B 71 66.53 -155.21 REMARK 500 ALA B 81 -147.28 -126.85 REMARK 500 GLN D 82 72.18 -150.71 REMARK 500 LEU D 84 -69.22 58.62 REMARK 500 ALA D 157 23.28 -69.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 4WQO A 1 213 UNP P40337 VHL_HUMAN 1 213 DBREF 4WQO B 1 118 UNP Q15370 ELOB_HUMAN 1 118 DBREF 4WQO C 17 112 UNP Q15369 ELOC_HUMAN 17 112 DBREF 4WQO D 1 163 UNP Q13617 CUL2_HUMAN 20 182 SEQADV 4WQO MET A -19 UNP P40337 INITIATING METHIONINE SEQADV 4WQO GLY A -18 UNP P40337 EXPRESSION TAG SEQADV 4WQO SER A -17 UNP P40337 EXPRESSION TAG SEQADV 4WQO SER A -16 UNP P40337 EXPRESSION TAG SEQADV 4WQO HIS A -15 UNP P40337 EXPRESSION TAG SEQADV 4WQO HIS A -14 UNP P40337 EXPRESSION TAG SEQADV 4WQO HIS A -13 UNP P40337 EXPRESSION TAG SEQADV 4WQO HIS A -12 UNP P40337 EXPRESSION TAG SEQADV 4WQO HIS A -11 UNP P40337 EXPRESSION TAG SEQADV 4WQO HIS A -10 UNP P40337 EXPRESSION TAG SEQADV 4WQO SER A -9 UNP P40337 EXPRESSION TAG SEQADV 4WQO SER A -8 UNP P40337 EXPRESSION TAG SEQADV 4WQO GLY A -7 UNP P40337 EXPRESSION TAG SEQADV 4WQO LEU A -6 UNP P40337 EXPRESSION TAG SEQADV 4WQO VAL A -5 UNP P40337 EXPRESSION TAG SEQADV 4WQO PRO A -4 UNP P40337 EXPRESSION TAG SEQADV 4WQO ARG A -3 UNP P40337 EXPRESSION TAG SEQADV 4WQO GLY A -2 UNP P40337 EXPRESSION TAG SEQADV 4WQO SER A -1 UNP P40337 EXPRESSION TAG SEQADV 4WQO HIS A 0 UNP P40337 EXPRESSION TAG SEQADV 4WQO MET D -22 UNP Q13617 INITIATING METHIONINE SEQADV 4WQO GLY D -21 UNP Q13617 EXPRESSION TAG SEQADV 4WQO SER D -20 UNP Q13617 EXPRESSION TAG SEQADV 4WQO SER D -19 UNP Q13617 EXPRESSION TAG SEQADV 4WQO HIS D -18 UNP Q13617 EXPRESSION TAG SEQADV 4WQO HIS D -17 UNP Q13617 EXPRESSION TAG SEQADV 4WQO HIS D -16 UNP Q13617 EXPRESSION TAG SEQADV 4WQO HIS D -15 UNP Q13617 EXPRESSION TAG SEQADV 4WQO HIS D -14 UNP Q13617 EXPRESSION TAG SEQADV 4WQO HIS D -13 UNP Q13617 EXPRESSION TAG SEQADV 4WQO SER D -12 UNP Q13617 EXPRESSION TAG SEQADV 4WQO GLN D -11 UNP Q13617 EXPRESSION TAG SEQADV 4WQO ASP D -10 UNP Q13617 EXPRESSION TAG SEQADV 4WQO PRO D -9 UNP Q13617 EXPRESSION TAG SEQADV 4WQO THR D -8 UNP Q13617 EXPRESSION TAG SEQADV 4WQO THR D -7 UNP Q13617 EXPRESSION TAG SEQADV 4WQO VAL D -6 UNP Q13617 EXPRESSION TAG SEQADV 4WQO LYS D -5 UNP Q13617 EXPRESSION TAG SEQADV 4WQO LEU D -4 UNP Q13617 EXPRESSION TAG SEQADV 4WQO GLN D -3 UNP Q13617 EXPRESSION TAG SEQADV 4WQO ALA D -2 UNP Q13617 EXPRESSION TAG SEQADV 4WQO GLY D -1 UNP Q13617 EXPRESSION TAG SEQADV 4WQO PHE D 0 UNP Q13617 EXPRESSION TAG SEQRES 1 A 233 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 233 LEU VAL PRO ARG GLY SER HIS MET PRO ARG ARG ALA GLU SEQRES 3 A 233 ASN TRP ASP GLU ALA GLU VAL GLY ALA GLU GLU ALA GLY SEQRES 4 A 233 VAL GLU GLU TYR GLY PRO GLU GLU ASP GLY GLY GLU GLU SEQRES 5 A 233 SER GLY ALA GLU GLU SER GLY PRO GLU GLU SER GLY PRO SEQRES 6 A 233 GLU GLU LEU GLY ALA GLU GLU GLU MET GLU ALA GLY ARG SEQRES 7 A 233 PRO ARG PRO VAL LEU ARG SER VAL ASN SER ARG GLU PRO SEQRES 8 A 233 SER GLN VAL ILE PHE CYS ASN ARG SER PRO ARG VAL VAL SEQRES 9 A 233 LEU PRO VAL TRP LEU ASN PHE ASP GLY GLU PRO GLN PRO SEQRES 10 A 233 TYR PRO THR LEU PRO PRO GLY THR GLY ARG ARG ILE HIS SEQRES 11 A 233 SER TYR ARG GLY HIS LEU TRP LEU PHE ARG ASP ALA GLY SEQRES 12 A 233 THR HIS ASP GLY LEU LEU VAL ASN GLN THR GLU LEU PHE SEQRES 13 A 233 VAL PRO SER LEU ASN VAL ASP GLY GLN PRO ILE PHE ALA SEQRES 14 A 233 ASN ILE THR LEU PRO VAL TYR THR LEU LYS GLU ARG CYS SEQRES 15 A 233 LEU GLN VAL VAL ARG SER LEU VAL LYS PRO GLU ASN TYR SEQRES 16 A 233 ARG ARG LEU ASP ILE VAL ARG SER LEU TYR GLU ASP LEU SEQRES 17 A 233 GLU ASP HIS PRO ASN VAL GLN LYS ASP LEU GLU ARG LEU SEQRES 18 A 233 THR GLN GLU ARG ILE ALA HIS GLN ARG MET GLY ASP SEQRES 1 B 118 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 B 118 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 B 118 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 B 118 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 B 118 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 B 118 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 B 118 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 B 118 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 9 B 118 PRO GLN ASP SER GLY SER SER ALA ASN GLU GLN ALA VAL SEQRES 10 B 118 GLN SEQRES 1 C 96 MET TYR VAL LYS LEU ILE SER SER ASP GLY HIS GLU PHE SEQRES 2 C 96 ILE VAL LYS ARG GLU HIS ALA LEU THR SER GLY THR ILE SEQRES 3 C 96 LYS ALA MET LEU SER GLY PRO GLY GLN PHE ALA GLU ASN SEQRES 4 C 96 GLU THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SER HIS SEQRES 5 C 96 VAL LEU SER LYS VAL CYS MET TYR PHE THR TYR LYS VAL SEQRES 6 C 96 ARG TYR THR ASN SER SER THR GLU ILE PRO GLU PHE PRO SEQRES 7 C 96 ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU MET ALA ALA SEQRES 8 C 96 ASN PHE LEU ASP CYS SEQRES 1 D 186 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 D 186 PRO THR THR VAL LYS LEU GLN ALA GLY PHE MET SER LEU SEQRES 3 D 186 LYS PRO ARG VAL VAL ASP PHE ASP GLU THR TRP ASN LYS SEQRES 4 D 186 LEU LEU THR THR ILE LYS ALA VAL VAL MET LEU GLU TYR SEQRES 5 D 186 VAL GLU ARG ALA THR TRP ASN ASP ARG PHE SER ASP ILE SEQRES 6 D 186 TYR ALA LEU CYS VAL ALA TYR PRO GLU PRO LEU GLY GLU SEQRES 7 D 186 ARG LEU TYR THR GLU THR LYS ILE PHE LEU GLU ASN HIS SEQRES 8 D 186 VAL ARG HIS LEU HIS LYS ARG VAL LEU GLU SER GLU GLU SEQRES 9 D 186 GLN VAL LEU VAL MET TYR HIS ARG TYR TRP GLU GLU TYR SEQRES 10 D 186 SER LYS GLY ALA ASP TYR MET ASP CYS LEU TYR ARG TYR SEQRES 11 D 186 LEU ASN THR GLN PHE ILE LYS LYS ASN LYS LEU THR GLU SEQRES 12 D 186 ALA ASP LEU GLN TYR GLY TYR GLY GLY VAL ASP MET ASN SEQRES 13 D 186 GLU PRO LEU MET GLU ILE GLY GLU LEU ALA LEU ASP MET SEQRES 14 D 186 TRP ARG LYS LEU MET VAL GLU PRO LEU GLN ALA ILE LEU SEQRES 15 D 186 ILE ARG MET LEU HELIX 1 AA1 THR A 157 VAL A 170 1 14 HELIX 2 AA2 LYS A 171 LEU A 178 5 8 HELIX 3 AA3 SER A 183 ASP A 190 1 8 HELIX 4 AA4 ASN A 193 ALA A 207 1 15 HELIX 5 AA5 THR B 23 LYS B 36 1 14 HELIX 6 AA6 PRO B 38 ASP B 40 5 3 HELIX 7 AA7 PRO B 100 LYS B 104 5 5 HELIX 8 AA8 ARG C 33 LEU C 37 1 5 HELIX 9 AA9 SER C 39 LEU C 46 1 8 HELIX 10 AB1 PRO C 66 THR C 84 1 19 HELIX 11 AB2 ALA C 96 GLU C 98 5 3 HELIX 12 AB3 ILE C 99 ASP C 111 1 13 HELIX 13 AB4 ASP D 9 MET D 26 1 18 HELIX 14 AB5 GLU D 31 ALA D 48 1 18 HELIX 15 AB6 LEU D 53 GLU D 78 1 26 HELIX 16 AB7 LEU D 84 TYR D 105 1 22 HELIX 17 AB8 TYR D 105 ILE D 113 1 9 HELIX 18 AB9 GLU D 138 ALA D 157 1 20 SHEET 1 AA1 4 GLY A 106 TYR A 112 0 SHEET 2 AA1 4 PRO A 71 ARG A 79 -1 N VAL A 74 O ILE A 109 SHEET 3 AA1 4 ILE A 147 THR A 152 1 O ILE A 151 N CYS A 77 SHEET 4 AA1 4 LEU A 129 VAL A 130 -1 N LEU A 129 O THR A 152 SHEET 1 AA2 3 PRO A 95 PRO A 97 0 SHEET 2 AA2 3 VAL A 84 LEU A 89 -1 N TRP A 88 O GLN A 96 SHEET 3 AA2 3 LEU A 116 ASP A 121 -1 O LEU A 118 N VAL A 87 SHEET 1 AA3 7 GLN B 42 TYR B 45 0 SHEET 2 AA3 7 ALA B 73 PHE B 79 -1 O GLY B 76 N TYR B 45 SHEET 3 AA3 7 ASP B 2 ARG B 8 1 N MET B 6 O VAL B 75 SHEET 4 AA3 7 THR B 12 LYS B 19 -1 O ALA B 18 N VAL B 3 SHEET 5 AA3 7 GLU C 28 LYS C 32 1 O ILE C 30 N THR B 13 SHEET 6 AA3 7 TYR C 18 ILE C 22 -1 N LEU C 21 O PHE C 29 SHEET 7 AA3 7 GLU C 59 ASN C 61 1 O VAL C 60 N ILE C 22 CISPEP 1 GLY C 48 PRO C 49 0 -3.41 CISPEP 2 PRO C 49 GLY C 50 0 -8.09 CISPEP 3 TYR D 49 PRO D 50 0 -5.54 CRYST1 108.278 108.278 213.768 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009235 0.005332 0.000000 0.00000 SCALE2 0.000000 0.010664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004678 0.00000