HEADER CYTOKINE/CYTOKINE RECEPTOR 24-OCT-14 4WRM TITLE STRUCTURE OF THE HUMAN CSF-1:CSF-1R COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE COLONY-STIMULATING FACTOR 1 RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-504; COMPND 5 SYNONYM: CSF-1 RECEPTOR,M-CSF-R,PROTO-ONCOGENE C-FMS; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MACROPHAGE COLONY-STIMULATING FACTOR 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 33-181; COMPND 12 SYNONYM: MCSF,LANIMOSTIM; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSF1R, FMS; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: CSF1; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOKINE-CYTOKINE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.FELIX,S.DE MUNCK,J.ELEGHEERT,S.N.SAVVIDES REVDAT 5 10-JAN-24 4WRM 1 SSBOND REVDAT 4 03-APR-19 4WRM 1 SOURCE REVDAT 3 20-FEB-19 4WRM 1 REMARK LINK REVDAT 2 09-SEP-15 4WRM 1 JRNL REVDAT 1 12-AUG-15 4WRM 0 JRNL AUTH J.FELIX,S.DE MUNCK,K.VERSTRAETE,L.MEURIS,N.CALLEWAERT, JRNL AUTH 2 J.ELEGHEERT,S.N.SAVVIDES JRNL TITL STRUCTURE AND ASSEMBLY MECHANISM OF THE SIGNALING COMPLEX JRNL TITL 2 MEDIATED BY HUMAN CSF-1. JRNL REF STRUCTURE V. 23 1621 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26235028 JRNL DOI 10.1016/J.STR.2015.06.019 REMARK 2 REMARK 2 RESOLUTION. 6.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1685) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 6.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.7 REMARK 3 NUMBER OF REFLECTIONS : 3194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.330 REMARK 3 R VALUE (WORKING SET) : 0.326 REMARK 3 FREE R VALUE : 0.359 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.740 REMARK 3 FREE R VALUE TEST SET COUNT : 311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7532 - 8.6266 1.00 1792 199 0.3097 0.3365 REMARK 3 2 8.6266 - 6.8533 0.65 1091 112 0.3754 0.4301 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 238.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 313.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4635 REMARK 3 ANGLE : 1.200 6301 REMARK 3 CHIRALITY : 0.060 718 REMARK 3 PLANARITY : 0.006 814 REMARK 3 DIHEDRAL : 15.282 1641 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -69.5998 163.7688 -6.8841 REMARK 3 T TENSOR REMARK 3 T11: 2.9341 T22: 2.5904 REMARK 3 T33: 2.9260 T12: -0.2475 REMARK 3 T13: -0.4947 T23: -1.4313 REMARK 3 L TENSOR REMARK 3 L11: 0.3858 L22: 0.4700 REMARK 3 L33: 1.1419 L12: 0.3954 REMARK 3 L13: 0.1659 L23: 0.0338 REMARK 3 S TENSOR REMARK 3 S11: -0.5994 S12: -0.3743 S13: 0.2151 REMARK 3 S21: -0.5170 S22: 0.3342 S23: -0.5155 REMARK 3 S31: -0.0079 S32: 0.7508 S33: -1.5123 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WRM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0015 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3953 REMARK 200 RESOLUTION RANGE HIGH (A) : 6.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.752 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 7.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 1.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WRL AND 4LIQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 85.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 0.1 M TRIS PH 8.0 AND 8% REMARK 280 W/V PEG 20000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.39000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.78000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.58500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.97500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.19500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.39000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 60.78000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.97500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.58500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.19500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 217 REMARK 465 GLU A 218 REMARK 465 GLN A 267 REMARK 465 GLU A 297 REMARK 465 PRO A 349 REMARK 465 THR A 356 REMARK 465 LYS A 357 REMARK 465 ASP A 358 REMARK 465 ILE A 411 REMARK 465 ASN A 412 REMARK 465 GLY A 413 REMARK 465 SER A 414 REMARK 465 SER A 435 REMARK 465 GLY A 436 REMARK 465 HIS A 437 REMARK 465 THR A 438 REMARK 465 ASP A 439 REMARK 465 ARG A 440 REMARK 465 CYS A 441 REMARK 465 ASP A 442 REMARK 465 GLU A 443 REMARK 465 ALA A 444 REMARK 465 GLN A 445 REMARK 465 VAL A 446 REMARK 465 LEU A 472 REMARK 465 THR A 473 REMARK 465 VAL A 474 REMARK 465 GLU A 475 REMARK 465 THR A 476 REMARK 465 LEU A 477 REMARK 465 GLU A 478 REMARK 465 HIS A 479 REMARK 465 ASN A 480 REMARK 465 GLN A 481 REMARK 465 ILE A 499 REMARK 465 PRO A 500 REMARK 465 ILE A 501 REMARK 465 SER A 502 REMARK 465 ALA A 503 REMARK 465 GLY A 504 REMARK 465 THR A 505 REMARK 465 LYS A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 GLU B 1 REMARK 465 GLU B 96 REMARK 465 GLU B 97 REMARK 465 HIS B 98 REMARK 465 ASP B 99 REMARK 465 SER B 147 REMARK 465 SER B 148 REMARK 465 GLN B 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 208 CG1 CG2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 222 CG1 CG2 CD1 REMARK 470 GLN A 249 CG CD OE1 NE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 ASP A 266 CG OD1 OD2 REMARK 470 VAL A 268 CG1 CG2 REMARK 470 ASP A 269 CG OD1 OD2 REMARK 470 GLN A 271 CG CD OE1 NE2 REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 295 CG1 CG2 REMARK 470 VAL A 296 CG1 CG2 REMARK 470 TRP A 389 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 389 CZ3 CH2 REMARK 470 PHE A 394 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 ASP B 39 CG OD1 OD2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LEU B 55 CG CD1 CD2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 TYR B 107 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 PHE B 143 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 TYR A 100 O LEU A 129 1.22 REMARK 500 NH1 ARG A 214 OH TYR A 328 1.62 REMARK 500 O PRO A 28 CZ2 TRP A 159 1.64 REMARK 500 CG2 ILE A 215 CA SER A 298 1.74 REMARK 500 CD1 TYR A 100 O LEU A 129 1.91 REMARK 500 CD1 ILE A 215 CA ALA A 299 2.00 REMARK 500 CD1 ILE A 215 N ALA A 299 2.03 REMARK 500 O PRO A 28 CH2 TRP A 159 2.10 REMARK 500 CG2 ILE A 215 N SER A 298 2.11 REMARK 500 OE1 GLU A 312 CD2 TYR A 424 2.11 REMARK 500 CG2 ILE A 215 C SER A 298 2.16 REMARK 500 N LEU A 432 O GLU A 484 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 60 CD1 TYR A 61 10665 1.31 REMARK 500 NH2 ARG A 370 OE2 GLU A 375 9554 1.67 REMARK 500 NH1 ARG A 370 OE1 GLU A 375 9554 2.11 REMARK 500 CD2 LEU A 91 OD1 ASP A 452 12565 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 427 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 PRO A 453 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 PRO A 455 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 -143.88 -126.62 REMARK 500 ASN A 240 -121.23 63.71 REMARK 500 LEU A 301 101.35 -160.11 REMARK 500 PRO A 329 -174.77 -67.22 REMARK 500 ARG A 370 56.29 36.20 REMARK 500 PRO A 455 -167.91 -69.75 REMARK 500 ASN A 489 -168.51 -123.33 REMARK 500 HIS B 9 -3.83 62.20 REMARK 500 ALA B 101 -163.96 63.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WRL RELATED DB: PDB DBREF 4WRM A 20 504 UNP P07333 CSF1R_HUMAN 20 504 DBREF 4WRM B 1 149 UNP P09603 CSF1_HUMAN 33 181 SEQADV 4WRM THR A 505 UNP P07333 EXPRESSION TAG SEQADV 4WRM LYS A 506 UNP P07333 EXPRESSION TAG SEQADV 4WRM HIS A 507 UNP P07333 EXPRESSION TAG SEQADV 4WRM HIS A 508 UNP P07333 EXPRESSION TAG SEQADV 4WRM HIS A 509 UNP P07333 EXPRESSION TAG SEQADV 4WRM HIS A 510 UNP P07333 EXPRESSION TAG SEQADV 4WRM HIS A 511 UNP P07333 EXPRESSION TAG SEQADV 4WRM HIS A 512 UNP P07333 EXPRESSION TAG SEQADV 4WRM MET B -20 UNP P09603 INITIATING METHIONINE SEQADV 4WRM GLY B -19 UNP P09603 EXPRESSION TAG SEQADV 4WRM SER B -18 UNP P09603 EXPRESSION TAG SEQADV 4WRM SER B -17 UNP P09603 EXPRESSION TAG SEQADV 4WRM HIS B -16 UNP P09603 EXPRESSION TAG SEQADV 4WRM HIS B -15 UNP P09603 EXPRESSION TAG SEQADV 4WRM HIS B -14 UNP P09603 EXPRESSION TAG SEQADV 4WRM HIS B -13 UNP P09603 EXPRESSION TAG SEQADV 4WRM HIS B -12 UNP P09603 EXPRESSION TAG SEQADV 4WRM HIS B -11 UNP P09603 EXPRESSION TAG SEQADV 4WRM SER B -10 UNP P09603 EXPRESSION TAG SEQADV 4WRM SER B -9 UNP P09603 EXPRESSION TAG SEQADV 4WRM GLY B -8 UNP P09603 EXPRESSION TAG SEQADV 4WRM LEU B -7 UNP P09603 EXPRESSION TAG SEQADV 4WRM VAL B -6 UNP P09603 EXPRESSION TAG SEQADV 4WRM PRO B -5 UNP P09603 EXPRESSION TAG SEQADV 4WRM ARG B -4 UNP P09603 EXPRESSION TAG SEQADV 4WRM GLY B -3 UNP P09603 EXPRESSION TAG SEQADV 4WRM SER B -2 UNP P09603 EXPRESSION TAG SEQADV 4WRM HIS B -1 UNP P09603 EXPRESSION TAG SEQADV 4WRM MET B 0 UNP P09603 EXPRESSION TAG SEQRES 1 A 493 ILE PRO VAL ILE GLU PRO SER VAL PRO GLU LEU VAL VAL SEQRES 2 A 493 LYS PRO GLY ALA THR VAL THR LEU ARG CYS VAL GLY ASN SEQRES 3 A 493 GLY SER VAL GLU TRP ASP GLY PRO PRO SER PRO HIS TRP SEQRES 4 A 493 THR LEU TYR SER ASP GLY SER SER SER ILE LEU SER THR SEQRES 5 A 493 ASN ASN ALA THR PHE GLN ASN THR GLY THR TYR ARG CYS SEQRES 6 A 493 THR GLU PRO GLY ASP PRO LEU GLY GLY SER ALA ALA ILE SEQRES 7 A 493 HIS LEU TYR VAL LYS ASP PRO ALA ARG PRO TRP ASN VAL SEQRES 8 A 493 LEU ALA GLN GLU VAL VAL VAL PHE GLU ASP GLN ASP ALA SEQRES 9 A 493 LEU LEU PRO CYS LEU LEU THR ASP PRO VAL LEU GLU ALA SEQRES 10 A 493 GLY VAL SER LEU VAL ARG VAL ARG GLY ARG PRO LEU MET SEQRES 11 A 493 ARG HIS THR ASN TYR SER PHE SER PRO TRP HIS GLY PHE SEQRES 12 A 493 THR ILE HIS ARG ALA LYS PHE ILE GLN SER GLN ASP TYR SEQRES 13 A 493 GLN CYS SER ALA LEU MET GLY GLY ARG LYS VAL MET SER SEQRES 14 A 493 ILE SER ILE ARG LEU LYS VAL GLN LYS VAL ILE PRO GLY SEQRES 15 A 493 PRO PRO ALA LEU THR LEU VAL PRO ALA GLU LEU VAL ARG SEQRES 16 A 493 ILE ARG GLY GLU ALA ALA GLN ILE VAL CYS SER ALA SER SEQRES 17 A 493 SER VAL ASP VAL ASN PHE ASP VAL PHE LEU GLN HIS ASN SEQRES 18 A 493 ASN THR LYS LEU ALA ILE PRO GLN GLN SER ASP PHE HIS SEQRES 19 A 493 ASN ASN ARG TYR GLN LYS VAL LEU THR LEU ASN LEU ASP SEQRES 20 A 493 GLN VAL ASP PHE GLN HIS ALA GLY ASN TYR SER CYS VAL SEQRES 21 A 493 ALA SER ASN VAL GLN GLY LYS HIS SER THR SER MET PHE SEQRES 22 A 493 PHE ARG VAL VAL GLU SER ALA TYR LEU ASN LEU SER SER SEQRES 23 A 493 GLU GLN ASN LEU ILE GLN GLU VAL THR VAL GLY GLU GLY SEQRES 24 A 493 LEU ASN LEU LYS VAL MET VAL GLU ALA TYR PRO GLY LEU SEQRES 25 A 493 GLN GLY PHE ASN TRP THR TYR LEU GLY PRO PHE SER ASP SEQRES 26 A 493 HIS GLN PRO GLU PRO LYS LEU ALA ASN ALA THR THR LYS SEQRES 27 A 493 ASP THR TYR ARG HIS THR PHE THR LEU SER LEU PRO ARG SEQRES 28 A 493 LEU LYS PRO SER GLU ALA GLY ARG TYR SER PHE LEU ALA SEQRES 29 A 493 ARG ASN PRO GLY GLY TRP ARG ALA LEU THR PHE GLU LEU SEQRES 30 A 493 THR LEU ARG TYR PRO PRO GLU VAL SER VAL ILE TRP THR SEQRES 31 A 493 PHE ILE ASN GLY SER GLY THR LEU LEU CYS ALA ALA SER SEQRES 32 A 493 GLY TYR PRO GLN PRO ASN VAL THR TRP LEU GLN CYS SER SEQRES 33 A 493 GLY HIS THR ASP ARG CYS ASP GLU ALA GLN VAL LEU GLN SEQRES 34 A 493 VAL TRP ASP ASP PRO TYR PRO GLU VAL LEU SER GLN GLU SEQRES 35 A 493 PRO PHE HIS LYS VAL THR VAL GLN SER LEU LEU THR VAL SEQRES 36 A 493 GLU THR LEU GLU HIS ASN GLN THR TYR GLU CYS ARG ALA SEQRES 37 A 493 HIS ASN SER VAL GLY SER GLY SER TRP ALA PHE ILE PRO SEQRES 38 A 493 ILE SER ALA GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 170 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 170 LEU VAL PRO ARG GLY SER HIS MET GLU GLU VAL SER GLU SEQRES 3 B 170 TYR CYS SER HIS MET ILE GLY SER GLY HIS LEU GLN SER SEQRES 4 B 170 LEU GLN ARG LEU ILE ASP SER GLN MET GLU THR SER CYS SEQRES 5 B 170 GLN ILE THR PHE GLU PHE VAL ASP GLN GLU GLN LEU LYS SEQRES 6 B 170 ASP PRO VAL CYS TYR LEU LYS LYS ALA PHE LEU LEU VAL SEQRES 7 B 170 GLN ASP ILE MET GLU ASP THR MET ARG PHE ARG ASP ASN SEQRES 8 B 170 THR PRO ASN ALA ILE ALA ILE VAL GLN LEU GLN GLU LEU SEQRES 9 B 170 SER LEU ARG LEU LYS SER CYS PHE THR LYS ASP TYR GLU SEQRES 10 B 170 GLU HIS ASP LYS ALA CYS VAL ARG THR PHE TYR GLU THR SEQRES 11 B 170 PRO LEU GLN LEU LEU GLU LYS VAL LYS ASN VAL PHE ASN SEQRES 12 B 170 GLU THR LYS ASN LEU LEU ASP LYS ASP TRP ASN ILE PHE SEQRES 13 B 170 SER LYS ASN CYS ASN ASN SER PHE ALA GLU CYS SER SER SEQRES 14 B 170 GLN HELIX 1 AA1 THR A 75 THR A 79 5 5 HELIX 2 AA2 ASP A 131 ALA A 136 5 6 HELIX 3 AA3 ARG A 144 ARG A 146 5 3 HELIX 4 AA4 LYS A 168 SER A 172 5 5 HELIX 5 AA5 LYS A 372 ALA A 376 5 5 HELIX 6 AA6 SER B 4 SER B 8 5 5 HELIX 7 AA7 GLY B 12 GLN B 26 1 15 HELIX 8 AA8 ASP B 45 THR B 64 1 20 HELIX 9 AA9 THR B 71 LYS B 88 1 18 HELIX 10 AB1 THR B 109 ASP B 131 1 23 HELIX 11 AB2 ASN B 133 LYS B 137 5 5 SHEET 1 AA1 4 VAL A 22 GLU A 24 0 SHEET 2 AA1 4 VAL A 38 VAL A 43 -1 O VAL A 43 N VAL A 22 SHEET 3 AA1 4 SER A 66 THR A 71 -1 O SER A 67 N CYS A 42 SHEET 4 AA1 4 THR A 59 SER A 62 -1 N TYR A 61 O ILE A 68 SHEET 1 AA2 4 GLU A 29 VAL A 32 0 SHEET 2 AA2 4 SER A 94 VAL A 101 1 O TYR A 100 N LEU A 30 SHEET 3 AA2 4 GLY A 80 THR A 85 -1 N TYR A 82 O ILE A 97 SHEET 4 AA2 4 GLU A 49 ASP A 51 -1 N ASP A 51 O ARG A 83 SHEET 1 AA3 2 TRP A 108 VAL A 110 0 SHEET 2 AA3 2 CYS A 127 LEU A 129 -1 O LEU A 128 N ASN A 109 SHEET 1 AA4 4 GLU A 114 PHE A 118 0 SHEET 2 AA4 4 ILE A 191 GLN A 196 1 O LYS A 194 N VAL A 115 SHEET 3 AA4 4 ASP A 174 MET A 181 -1 N TYR A 175 O ILE A 191 SHEET 4 AA4 4 VAL A 138 ARG A 142 -1 N SER A 139 O SER A 178 SHEET 1 AA5 4 GLU A 114 PHE A 118 0 SHEET 2 AA5 4 ILE A 191 GLN A 196 1 O LYS A 194 N VAL A 115 SHEET 3 AA5 4 ASP A 174 MET A 181 -1 N TYR A 175 O ILE A 191 SHEET 4 AA5 4 ARG A 184 MET A 187 -1 O VAL A 186 N ALA A 179 SHEET 1 AA6 3 ALA A 123 LEU A 125 0 SHEET 2 AA6 3 GLY A 161 ILE A 164 -1 O PHE A 162 N LEU A 125 SHEET 3 AA6 3 TYR A 154 SER A 157 -1 N SER A 157 O GLY A 161 SHEET 1 AA7 4 ALA A 204 LEU A 205 0 SHEET 2 AA7 4 ALA A 220 SER A 228 -1 O SER A 227 N ALA A 204 SHEET 3 AA7 4 ARG A 256 LEU A 265 -1 O LEU A 261 N CYS A 224 SHEET 4 AA7 4 GLN A 248 HIS A 253 -1 N GLN A 249 O VAL A 260 SHEET 1 AA8 5 GLU A 211 ILE A 215 0 SHEET 2 AA8 5 LYS A 286 VAL A 296 1 O ARG A 294 N ARG A 214 SHEET 3 AA8 5 GLY A 274 ASN A 282 -1 N CYS A 278 O THR A 289 SHEET 4 AA8 5 PHE A 233 HIS A 239 -1 N PHE A 236 O VAL A 279 SHEET 5 AA8 5 THR A 242 LYS A 243 -1 O THR A 242 N HIS A 239 SHEET 1 AA9 4 TYR A 300 SER A 304 0 SHEET 2 AA9 4 LEU A 319 TYR A 328 -1 O GLU A 326 N ASN A 302 SHEET 3 AA9 4 ARG A 361 LEU A 368 -1 O HIS A 362 N VAL A 325 SHEET 4 AA9 4 LEU A 351 ALA A 354 -1 N ALA A 352 O THR A 365 SHEET 1 AB1 4 ILE A 310 THR A 314 0 SHEET 2 AB1 4 GLY A 388 ARG A 399 1 O GLU A 395 N GLN A 311 SHEET 3 AB1 4 GLY A 377 ASN A 385 -1 N TYR A 379 O PHE A 394 SHEET 4 AB1 4 GLY A 333 TYR A 338 -1 N THR A 337 O SER A 380 SHEET 1 AB2 4 GLU A 403 THR A 409 0 SHEET 2 AB2 4 THR A 416 SER A 422 -1 O LEU A 418 N ILE A 407 SHEET 3 AB2 4 THR A 467 SER A 470 -1 O SER A 470 N CYS A 419 SHEET 4 AB2 4 GLU A 456 SER A 459 -1 N LEU A 458 O THR A 467 SHEET 1 AB3 4 GLN A 448 ASP A 452 0 SHEET 2 AB3 4 VAL A 429 GLN A 433 -1 N TRP A 431 O TRP A 450 SHEET 3 AB3 4 TYR A 483 HIS A 488 -1 O GLU A 484 N LEU A 432 SHEET 4 AB3 4 SER A 493 GLY A 494 -1 O GLY A 494 N ALA A 487 SHEET 1 AB4 2 ILE B 33 VAL B 38 0 SHEET 2 AB4 2 VAL B 103 GLU B 108 -1 O GLU B 108 N ILE B 33 SSBOND 1 CYS A 42 CYS A 84 1555 1555 2.03 SSBOND 2 CYS A 127 CYS A 177 1555 1555 2.03 SSBOND 3 CYS A 224 CYS A 278 1555 1555 2.03 SSBOND 4 CYS A 419 CYS A 485 1555 1555 2.04 SSBOND 5 CYS B 7 CYS B 90 1555 1555 2.04 SSBOND 6 CYS B 31 CYS B 31 1555 9554 2.04 SSBOND 7 CYS B 48 CYS B 139 1555 1555 2.03 SSBOND 8 CYS B 102 CYS B 146 1555 1555 2.03 CISPEP 1 GLU A 24 PRO A 25 0 5.32 CISPEP 2 VAL A 208 PRO A 209 0 -0.28 CISPEP 3 TYR A 328 PRO A 329 0 -2.42 CISPEP 4 TYR A 424 PRO A 425 0 -3.08 CRYST1 281.470 281.470 91.170 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003553 0.002051 0.000000 0.00000 SCALE2 0.000000 0.004102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010969 0.00000