HEADER LYASE 27-OCT-14 4WSH TITLE CRYSTAL STRUCTURE OF PROBABLE UROPORPHYRINOGEN DECARBOXYLASE (UPD) TITLE 2 (URO-D) FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROPORPHYRINOGEN DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PSAEA.01152.A.B1; COMPND 5 SYNONYM: URO-D; COMPND 6 EC: 4.1.1.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: HEME, PA5034; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSAEA.01152.A.B1 KEYWDS SSGCID, PSEUDOMONAS AERUGINOSA, UROPORPHYRINOGEN DECARBOXYLASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 27-DEC-23 4WSH 1 REMARK REVDAT 2 22-NOV-17 4WSH 1 SOURCE KEYWDS REMARK REVDAT 1 19-NOV-14 4WSH 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF PROBABLE UROPORPHYRINOGEN DECARBOXYLASE JRNL TITL 2 (UPD) (URO-D) FROM PSEUDOMONAS AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 55553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4968 - 5.2891 0.98 2777 144 0.1577 0.1650 REMARK 3 2 5.2891 - 4.1996 0.99 2706 146 0.1256 0.1639 REMARK 3 3 4.1996 - 3.6692 1.00 2679 142 0.1279 0.1528 REMARK 3 4 3.6692 - 3.3339 1.00 2638 168 0.1566 0.1823 REMARK 3 5 3.3339 - 3.0951 1.00 2660 132 0.1720 0.2151 REMARK 3 6 3.0951 - 2.9126 1.00 2660 145 0.1762 0.2528 REMARK 3 7 2.9126 - 2.7668 1.00 2633 142 0.1749 0.2453 REMARK 3 8 2.7668 - 2.6464 1.00 2610 133 0.1668 0.2176 REMARK 3 9 2.6464 - 2.5445 1.00 2653 148 0.1661 0.2160 REMARK 3 10 2.5445 - 2.4568 1.00 2594 152 0.1599 0.2313 REMARK 3 11 2.4568 - 2.3799 1.00 2598 154 0.1581 0.2018 REMARK 3 12 2.3799 - 2.3119 1.00 2640 121 0.1616 0.2336 REMARK 3 13 2.3119 - 2.2511 1.00 2629 126 0.1579 0.2423 REMARK 3 14 2.2511 - 2.1961 1.00 2617 151 0.1727 0.2163 REMARK 3 15 2.1961 - 2.1462 1.00 2600 142 0.1841 0.2544 REMARK 3 16 2.1462 - 2.1006 1.00 2623 137 0.1840 0.2331 REMARK 3 17 2.1006 - 2.0585 1.00 2589 142 0.1850 0.2447 REMARK 3 18 2.0585 - 2.0197 1.00 2612 136 0.1977 0.2438 REMARK 3 19 2.0197 - 1.9836 1.00 2625 147 0.1983 0.3081 REMARK 3 20 1.9836 - 1.9500 0.99 2556 146 0.2333 0.2688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5605 REMARK 3 ANGLE : 1.025 7649 REMARK 3 CHIRALITY : 0.042 837 REMARK 3 PLANARITY : 0.005 1000 REMARK 3 DIHEDRAL : 12.196 2038 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8897 31.6109 35.7971 REMARK 3 T TENSOR REMARK 3 T11: 0.2699 T22: 0.1938 REMARK 3 T33: 0.2421 T12: 0.0235 REMARK 3 T13: 0.0068 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 2.3301 L22: 1.7241 REMARK 3 L33: 1.6039 L12: 0.4012 REMARK 3 L13: 0.9207 L23: 0.2448 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.0505 S13: -0.0730 REMARK 3 S21: 0.1876 S22: -0.0040 S23: 0.0680 REMARK 3 S31: 0.0143 S32: -0.1048 S33: 0.0113 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2079 18.9416 30.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.1718 REMARK 3 T33: 0.1950 T12: 0.0009 REMARK 3 T13: -0.0071 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.8783 L22: 2.6178 REMARK 3 L33: 1.3619 L12: -0.4952 REMARK 3 L13: -0.0164 L23: 0.9319 REMARK 3 S TENSOR REMARK 3 S11: 0.1181 S12: 0.0436 S13: -0.0214 REMARK 3 S21: -0.1253 S22: -0.0865 S23: -0.1919 REMARK 3 S31: -0.0003 S32: 0.0474 S33: -0.0097 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7984 19.2331 23.6247 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1845 REMARK 3 T33: 0.2215 T12: -0.0108 REMARK 3 T13: -0.0017 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.0206 L22: 1.1468 REMARK 3 L33: 2.6645 L12: -0.0071 REMARK 3 L13: 0.4569 L23: 0.3668 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.0001 S13: -0.0054 REMARK 3 S21: 0.0428 S22: -0.0554 S23: 0.0702 REMARK 3 S31: 0.0326 S32: -0.0437 S33: 0.0349 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4305 40.9318 24.2392 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.1974 REMARK 3 T33: 0.2752 T12: 0.0583 REMARK 3 T13: -0.0158 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.3885 L22: 1.5558 REMARK 3 L33: 1.8492 L12: 0.8516 REMARK 3 L13: 0.6605 L23: 0.3861 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.0284 S13: 0.2225 REMARK 3 S21: -0.0372 S22: -0.0164 S23: 0.1380 REMARK 3 S31: -0.2478 S32: -0.1183 S33: 0.0510 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0346 32.0017 -12.1315 REMARK 3 T TENSOR REMARK 3 T11: 0.2693 T22: 0.2256 REMARK 3 T33: 0.1848 T12: 0.0379 REMARK 3 T13: -0.0112 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 4.0290 L22: 1.3287 REMARK 3 L33: 0.8484 L12: 0.0571 REMARK 3 L13: -1.2454 L23: -0.1284 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.0739 S13: 0.3085 REMARK 3 S21: -0.1047 S22: 0.1076 S23: -0.0071 REMARK 3 S31: -0.1895 S32: -0.0771 S33: -0.0243 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3660 43.0193 -6.7653 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.2853 REMARK 3 T33: 0.3280 T12: -0.0313 REMARK 3 T13: -0.0074 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.1031 L22: 2.7515 REMARK 3 L33: 2.3011 L12: -0.9298 REMARK 3 L13: -1.7824 L23: 0.8089 REMARK 3 S TENSOR REMARK 3 S11: 0.1774 S12: -0.0973 S13: 0.4869 REMARK 3 S21: 0.1428 S22: 0.1627 S23: -0.4248 REMARK 3 S31: -0.4672 S32: 0.3830 S33: -0.3149 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6701 46.3604 -0.4428 REMARK 3 T TENSOR REMARK 3 T11: 0.3935 T22: 0.2240 REMARK 3 T33: 0.3000 T12: 0.0434 REMARK 3 T13: -0.0217 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 2.1817 L22: 1.3279 REMARK 3 L33: 3.7052 L12: 0.1911 REMARK 3 L13: -1.7074 L23: -0.1100 REMARK 3 S TENSOR REMARK 3 S11: 0.1326 S12: 0.0025 S13: 0.2356 REMARK 3 S21: 0.0723 S22: -0.0715 S23: 0.0038 REMARK 3 S31: -0.4841 S32: 0.0532 S33: -0.0655 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 263 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8611 24.5680 -6.0446 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.2625 REMARK 3 T33: 0.1899 T12: -0.0074 REMARK 3 T13: -0.0192 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.8229 L22: 2.9612 REMARK 3 L33: 2.6964 L12: -0.4389 REMARK 3 L13: -0.9782 L23: 0.1421 REMARK 3 S TENSOR REMARK 3 S11: -0.0923 S12: 0.1715 S13: -0.0197 REMARK 3 S21: -0.0917 S22: 0.0451 S23: 0.0813 REMARK 3 S31: 0.0997 S32: -0.1221 S33: 0.0481 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.04500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTICS , MCSG1 F10: 2M AMMONIUM REMARK 280 SULPHATE, 100MM TRIS/HCL PH 8.5; PSAEA.01152.A.B1.PS2161 AT 32MG/ REMARK 280 ML; CRYO: 25% IN TWO STEPS; TRAY 257913F10, PUCK DXO7-1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.94000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.94000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PHE B 92 REMARK 465 GLU B 93 REMARK 465 THR B 94 REMARK 465 GLY B 95 REMARK 465 GLU B 96 REMARK 465 GLY B 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 THR A 94 OG1 CG2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ASP A 164 CG OD1 OD2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 GLN B 120 CG CD OE1 NE2 REMARK 470 SER B 161 OG REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 ASP B 164 CG OD1 OD2 REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 LYS B 185 CG CD CE NZ REMARK 470 GLN B 188 CG CD OE1 NE2 REMARK 470 LYS B 230 CG CD CE NZ REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 GLU B 285 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 19 O HOH A 681 2.17 REMARK 500 O ILE A 79 O HOH A 685 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 96 -89.46 -114.26 REMARK 500 SER A 105 -7.60 -141.15 REMARK 500 SER A 224 -62.45 -125.70 REMARK 500 ASN A 292 29.23 -143.29 REMARK 500 SER B 105 -18.53 -151.91 REMARK 500 ASP B 164 23.31 -146.77 REMARK 500 ASP B 209 69.13 -100.30 REMARK 500 SER B 224 -61.46 -122.35 REMARK 500 ASN B 292 27.60 -142.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-PSAEA.01152.A RELATED DB: TARGETTRACK DBREF 4WSH A 1 355 UNP P95458 DCUP_PSEAE 1 355 DBREF 4WSH B 1 355 UNP P95458 DCUP_PSEAE 1 355 SEQADV 4WSH MET A -7 UNP P95458 INITIATING METHIONINE SEQADV 4WSH ALA A -6 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS A -5 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS A -4 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS A -3 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS A -2 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS A -1 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS A 0 UNP P95458 EXPRESSION TAG SEQADV 4WSH MET B -7 UNP P95458 INITIATING METHIONINE SEQADV 4WSH ALA B -6 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS B -5 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS B -4 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS B -3 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS B -2 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS B -1 UNP P95458 EXPRESSION TAG SEQADV 4WSH HIS B 0 UNP P95458 EXPRESSION TAG SEQRES 1 A 363 MET ALA HIS HIS HIS HIS HIS HIS MET THR ALA LEU LYS SEQRES 2 A 363 ASN ASP ARG PHE LEU ARG ALA LEU LEU LYS GLN PRO VAL SEQRES 3 A 363 ASP VAL THR PRO VAL TRP MET MET ARG GLN ALA GLY ARG SEQRES 4 A 363 TYR LEU PRO GLU TYR ARG ALA THR ARG ALA LYS ALA GLY SEQRES 5 A 363 ASP PHE MET SER LEU CYS MET ASN PRO GLU LEU ALA CYS SEQRES 6 A 363 GLU VAL THR LEU GLN PRO LEU ASP ARG TYR PRO GLN LEU SEQRES 7 A 363 ASP ALA ALA ILE LEU PHE SER ASP ILE LEU THR ILE PRO SEQRES 8 A 363 ASP ALA MET GLY GLN GLY LEU TYR PHE GLU THR GLY GLU SEQRES 9 A 363 GLY PRO ARG PHE ARG LYS VAL VAL SER SER LEU ALA ASP SEQRES 10 A 363 ILE GLU ALA LEU PRO VAL PRO ASP PRO GLU GLN ASP LEU SEQRES 11 A 363 GLY TYR VAL MET ASP ALA VAL ARG THR ILE ARG ARG GLU SEQRES 12 A 363 LEU ASN GLY ARG VAL PRO LEU ILE GLY PHE SER GLY SER SEQRES 13 A 363 PRO TRP THR LEU ALA THR TYR MET VAL GLU GLY GLY SER SEQRES 14 A 363 SER LYS ASP PHE ARG LYS SER LYS ALA MET LEU TYR ASP SEQRES 15 A 363 ASN PRO LYS ALA MET HIS ALA LEU LEU ASP LYS LEU ALA SEQRES 16 A 363 GLN SER VAL THR SER TYR LEU ASN GLY GLN ILE HIS ALA SEQRES 17 A 363 GLY ALA GLN ALA VAL GLN ILE PHE ASP SER TRP GLY GLY SEQRES 18 A 363 SER LEU SER ALA ALA ALA TYR GLN GLU PHE SER LEU ALA SEQRES 19 A 363 TYR MET ARG LYS ILE VAL ASP GLY LEU ILE ARG GLU HIS SEQRES 20 A 363 ASP GLY ARG ARG VAL PRO VAL ILE LEU PHE THR LYS GLY SEQRES 21 A 363 GLY GLY LEU TRP LEU GLU SER MET ALA GLU VAL GLY ALA SEQRES 22 A 363 GLU ALA LEU GLY LEU ASP TRP THR CYS ASP ILE GLY SER SEQRES 23 A 363 ALA ARG ALA ARG VAL GLY GLU ARG VAL ALA LEU GLN GLY SEQRES 24 A 363 ASN MET ASP PRO SER VAL LEU TYR ALA ASN PRO ALA ALA SEQRES 25 A 363 ILE ARG ALA GLU VAL ALA ARG ILE LEU ALA ALA TYR GLY SEQRES 26 A 363 LYS GLY THR GLY HIS VAL PHE ASN LEU GLY HIS GLY ILE SEQRES 27 A 363 THR PRO GLU VAL ASP PRO ALA HIS ALA GLY ALA PHE PHE SEQRES 28 A 363 GLU ALA VAL HIS GLU LEU SER ALA GLN TYR HIS GLY SEQRES 1 B 363 MET ALA HIS HIS HIS HIS HIS HIS MET THR ALA LEU LYS SEQRES 2 B 363 ASN ASP ARG PHE LEU ARG ALA LEU LEU LYS GLN PRO VAL SEQRES 3 B 363 ASP VAL THR PRO VAL TRP MET MET ARG GLN ALA GLY ARG SEQRES 4 B 363 TYR LEU PRO GLU TYR ARG ALA THR ARG ALA LYS ALA GLY SEQRES 5 B 363 ASP PHE MET SER LEU CYS MET ASN PRO GLU LEU ALA CYS SEQRES 6 B 363 GLU VAL THR LEU GLN PRO LEU ASP ARG TYR PRO GLN LEU SEQRES 7 B 363 ASP ALA ALA ILE LEU PHE SER ASP ILE LEU THR ILE PRO SEQRES 8 B 363 ASP ALA MET GLY GLN GLY LEU TYR PHE GLU THR GLY GLU SEQRES 9 B 363 GLY PRO ARG PHE ARG LYS VAL VAL SER SER LEU ALA ASP SEQRES 10 B 363 ILE GLU ALA LEU PRO VAL PRO ASP PRO GLU GLN ASP LEU SEQRES 11 B 363 GLY TYR VAL MET ASP ALA VAL ARG THR ILE ARG ARG GLU SEQRES 12 B 363 LEU ASN GLY ARG VAL PRO LEU ILE GLY PHE SER GLY SER SEQRES 13 B 363 PRO TRP THR LEU ALA THR TYR MET VAL GLU GLY GLY SER SEQRES 14 B 363 SER LYS ASP PHE ARG LYS SER LYS ALA MET LEU TYR ASP SEQRES 15 B 363 ASN PRO LYS ALA MET HIS ALA LEU LEU ASP LYS LEU ALA SEQRES 16 B 363 GLN SER VAL THR SER TYR LEU ASN GLY GLN ILE HIS ALA SEQRES 17 B 363 GLY ALA GLN ALA VAL GLN ILE PHE ASP SER TRP GLY GLY SEQRES 18 B 363 SER LEU SER ALA ALA ALA TYR GLN GLU PHE SER LEU ALA SEQRES 19 B 363 TYR MET ARG LYS ILE VAL ASP GLY LEU ILE ARG GLU HIS SEQRES 20 B 363 ASP GLY ARG ARG VAL PRO VAL ILE LEU PHE THR LYS GLY SEQRES 21 B 363 GLY GLY LEU TRP LEU GLU SER MET ALA GLU VAL GLY ALA SEQRES 22 B 363 GLU ALA LEU GLY LEU ASP TRP THR CYS ASP ILE GLY SER SEQRES 23 B 363 ALA ARG ALA ARG VAL GLY GLU ARG VAL ALA LEU GLN GLY SEQRES 24 B 363 ASN MET ASP PRO SER VAL LEU TYR ALA ASN PRO ALA ALA SEQRES 25 B 363 ILE ARG ALA GLU VAL ALA ARG ILE LEU ALA ALA TYR GLY SEQRES 26 B 363 LYS GLY THR GLY HIS VAL PHE ASN LEU GLY HIS GLY ILE SEQRES 27 B 363 THR PRO GLU VAL ASP PRO ALA HIS ALA GLY ALA PHE PHE SEQRES 28 B 363 GLU ALA VAL HIS GLU LEU SER ALA GLN TYR HIS GLY HET CL A 400 1 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET CL B 400 1 HET SO4 B 401 5 HET SO4 B 402 5 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 3 CL 2(CL 1-) FORMUL 4 SO4 9(O4 S 2-) FORMUL 14 HOH *376(H2 O) HELIX 1 AA1 ASP A 7 LEU A 14 1 8 HELIX 2 AA2 LEU A 33 GLY A 44 1 12 HELIX 3 AA3 ASP A 45 MET A 51 1 7 HELIX 4 AA4 ASN A 52 TYR A 67 1 16 HELIX 5 AA5 LEU A 80 MET A 86 1 7 HELIX 6 AA6 SER A 106 LEU A 113 1 8 HELIX 7 AA7 ASP A 117 LEU A 122 1 6 HELIX 8 AA8 LEU A 122 ASN A 137 1 16 HELIX 9 AA9 SER A 148 GLY A 159 1 12 HELIX 10 AB1 PHE A 165 ASN A 175 1 11 HELIX 11 AB2 ASN A 175 GLY A 201 1 27 HELIX 12 AB3 TRP A 211 LEU A 215 5 5 HELIX 13 AB4 SER A 216 SER A 224 1 9 HELIX 14 AB5 SER A 224 LEU A 235 1 12 HELIX 15 AB6 GLY A 253 LEU A 255 5 3 HELIX 16 AB7 TRP A 256 ALA A 261 1 6 HELIX 17 AB8 ASP A 275 GLY A 284 1 10 HELIX 18 AB9 ASP A 294 ALA A 300 5 7 HELIX 19 AC1 ASN A 301 GLY A 317 1 17 HELIX 20 AC2 ASP A 335 ALA A 351 1 17 HELIX 21 AC3 GLN A 352 HIS A 354 5 3 HELIX 22 AC4 ASP B 7 LEU B 14 1 8 HELIX 23 AC5 LEU B 33 GLY B 44 1 12 HELIX 24 AC6 ASP B 45 ASN B 52 1 8 HELIX 25 AC7 ASN B 52 TYR B 67 1 16 HELIX 26 AC8 LEU B 80 MET B 86 1 7 HELIX 27 AC9 SER B 106 LEU B 113 1 8 HELIX 28 AD1 ASP B 117 LEU B 122 1 6 HELIX 29 AD2 LEU B 122 ASN B 137 1 16 HELIX 30 AD3 SER B 148 GLY B 159 1 12 HELIX 31 AD4 PHE B 165 ASN B 175 1 11 HELIX 32 AD5 ASN B 175 GLY B 201 1 27 HELIX 33 AD6 TRP B 211 LEU B 215 5 5 HELIX 34 AD7 SER B 216 SER B 224 1 9 HELIX 35 AD8 SER B 224 LEU B 235 1 12 HELIX 36 AD9 GLY B 253 LEU B 255 5 3 HELIX 37 AE1 TRP B 256 ALA B 261 1 6 HELIX 38 AE2 ASP B 275 GLY B 284 1 10 HELIX 39 AE3 ASP B 294 ALA B 300 5 7 HELIX 40 AE4 ASN B 301 GLY B 317 1 17 HELIX 41 AE5 ASP B 335 ALA B 351 1 17 HELIX 42 AE6 GLN B 352 HIS B 354 5 3 SHEET 1 AA1 7 ALA A 73 ILE A 74 0 SHEET 2 AA1 7 LEU A 142 GLY A 147 1 O ILE A 143 N ALA A 73 SHEET 3 AA1 7 ALA A 204 ASP A 209 1 O ALA A 204 N GLY A 144 SHEET 4 AA1 7 VAL A 246 THR A 250 1 O ILE A 247 N ILE A 207 SHEET 5 AA1 7 ALA A 267 GLY A 269 1 O GLY A 269 N LEU A 248 SHEET 6 AA1 7 ALA A 288 GLN A 290 1 O GLN A 290 N LEU A 268 SHEET 7 AA1 7 HIS A 322 VAL A 323 1 O VAL A 323 N LEU A 289 SHEET 1 AA2 2 LEU A 90 PHE A 92 0 SHEET 2 AA2 2 PRO A 98 PHE A 100 -1 O ARG A 99 N TYR A 91 SHEET 1 AA3 2 GLU A 238 HIS A 239 0 SHEET 2 AA3 2 ARG A 242 ARG A 243 -1 O ARG A 242 N HIS A 239 SHEET 1 AA4 7 ALA B 73 ILE B 74 0 SHEET 2 AA4 7 LEU B 142 GLY B 147 1 O ILE B 143 N ALA B 73 SHEET 3 AA4 7 ALA B 204 PHE B 208 1 O ALA B 204 N GLY B 144 SHEET 4 AA4 7 VAL B 246 PHE B 249 1 O ILE B 247 N ILE B 207 SHEET 5 AA4 7 ALA B 267 GLY B 269 1 O GLY B 269 N LEU B 248 SHEET 6 AA4 7 ALA B 288 MET B 293 1 O GLN B 290 N LEU B 268 SHEET 7 AA4 7 HIS B 322 LEU B 326 1 O VAL B 323 N LEU B 289 SHEET 1 AA5 2 GLU B 238 HIS B 239 0 SHEET 2 AA5 2 ARG B 242 ARG B 243 -1 O ARG B 242 N HIS B 239 CISPEP 1 GLY A 291 ASN A 292 0 3.77 CISPEP 2 GLY B 291 ASN B 292 0 3.99 SITE 1 AC1 4 ILE A 276 ASN A 292 ARG A 311 HOH A 662 SITE 1 AC2 7 PRO A 17 VAL A 18 GLY A 319 THR A 320 SITE 2 AC2 7 HIS A 354 GLY A 355 HOH A 637 SITE 1 AC3 6 ARG A 27 GLY A 30 ARG A 31 PRO A 332 SITE 2 AC3 6 HOH A 606 HOH A 663 SITE 1 AC4 2 ARG A 237 GLU A 238 SITE 1 AC5 4 SER A 106 LEU A 107 ASN A 175 HOH A 667 SITE 1 AC6 3 GLN A 16 ARG A 243 HOH A 703 SITE 1 AC7 3 ARG A 8 HOH A 621 ARG B 11 SITE 1 AC8 3 ARG A 27 HIS A 328 GLY A 329 SITE 1 AC9 4 ILE B 276 ASN B 292 ARG B 311 HOH B 532 SITE 1 AD1 8 PRO B 17 VAL B 18 GLY B 319 THR B 320 SITE 2 AD1 8 HIS B 354 GLY B 355 HOH B 604 HOH B 631 SITE 1 AD2 8 ARG B 27 GLY B 30 ARG B 31 PRO B 332 SITE 2 AD2 8 HOH B 558 HOH B 606 HOH B 632 HOH B 664 CRYST1 71.760 73.880 141.880 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007048 0.00000