HEADER CHAPERONE 29-OCT-14 4WT4 TITLE THE C-TERMINAL DOMAIN OF RUBISCO ACCUMULATION FACTOR 1 FROM TITLE 2 ARABIDOPSIS THALIANA, CRYSTAL FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBISCO ACCUMULATION FACTOR 1, ISOFORM 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RAF1 BETA-DOMAIN, UNP RESIDUES 281-449; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RAF2, AT3G04550, F7O18.2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHUE KEYWDS CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR T.HAUSER,J.Y.BHAT,G.MILICIC,P.WENDLER,F.U.HARTL,A.BRACHER,M.HAYER- AUTHOR 2 HARTL REVDAT 3 16-SEP-15 4WT4 1 JRNL REVDAT 2 12-AUG-15 4WT4 1 JRNL REVDAT 1 22-JUL-15 4WT4 0 JRNL AUTH T.HAUSER,J.Y.BHAT,G.MILICIC,P.WENDLER,F.U.HARTL,A.BRACHER, JRNL AUTH 2 M.HAYER-HARTL JRNL TITL STRUCTURE AND MECHANISM OF THE RUBISCO-ASSEMBLY CHAPERONE JRNL TITL 2 RAF1. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 720 2015 JRNL REFN ESSN 1545-9985 JRNL PMID 26237510 JRNL DOI 10.1038/NSMB.3062 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 717 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 965 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4443 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.51000 REMARK 3 B22 (A**2) : -3.60000 REMARK 3 B33 (A**2) : 2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.473 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.460 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.625 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4537 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6179 ; 1.063 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 585 ; 4.528 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;34.621 ;23.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 745 ;17.270 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;17.970 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 723 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3363 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 286 435 B 286 435 143 0.050 0.050 REMARK 3 2 A 287 436 C 287 436 140 0.060 0.050 REMARK 3 3 A 287 434 D 287 434 133 0.060 0.050 REMARK 3 4 B 287 435 C 287 435 138 0.020 0.050 REMARK 3 5 B 287 434 D 287 434 133 0.020 0.050 REMARK 3 6 C 287 433 D 287 433 149 0.010 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14418 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.509 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69700 REMARK 200 R SYM FOR SHELL (I) : 0.69700 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX, RESOLVE 2.13 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.76900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.18050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.76900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.18050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER, A.U. CONTAINS TWO DIMERS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 281 REMARK 465 GLU A 282 REMARK 465 VAL A 283 REMARK 465 LYS A 284 REMARK 465 ALA A 285 REMARK 465 GLY A 296 REMARK 465 GLU A 297 REMARK 465 VAL A 298 REMARK 465 ASP A 437 REMARK 465 ASP A 438 REMARK 465 ASP A 439 REMARK 465 ASP A 440 REMARK 465 TRP A 441 REMARK 465 GLN A 442 REMARK 465 THR A 443 REMARK 465 SER A 444 REMARK 465 HIS A 445 REMARK 465 GLN A 446 REMARK 465 ASN A 447 REMARK 465 TRP A 448 REMARK 465 ASP A 449 REMARK 465 GLU B 281 REMARK 465 GLU B 282 REMARK 465 VAL B 283 REMARK 465 LYS B 284 REMARK 465 ALA B 285 REMARK 465 GLY B 296 REMARK 465 GLU B 297 REMARK 465 VAL B 298 REMARK 465 ALA B 299 REMARK 465 GLU B 300 REMARK 465 GLU B 436 REMARK 465 ASP B 437 REMARK 465 ASP B 438 REMARK 465 ASP B 439 REMARK 465 ASP B 440 REMARK 465 TRP B 441 REMARK 465 GLN B 442 REMARK 465 THR B 443 REMARK 465 SER B 444 REMARK 465 HIS B 445 REMARK 465 GLN B 446 REMARK 465 ASN B 447 REMARK 465 TRP B 448 REMARK 465 ASP B 449 REMARK 465 GLU C 281 REMARK 465 GLU C 282 REMARK 465 VAL C 283 REMARK 465 LYS C 284 REMARK 465 ALA C 285 REMARK 465 ILE C 286 REMARK 465 ASP C 437 REMARK 465 ASP C 438 REMARK 465 ASP C 439 REMARK 465 ASP C 440 REMARK 465 TRP C 441 REMARK 465 GLN C 442 REMARK 465 THR C 443 REMARK 465 SER C 444 REMARK 465 HIS C 445 REMARK 465 GLN C 446 REMARK 465 ASN C 447 REMARK 465 TRP C 448 REMARK 465 ASP C 449 REMARK 465 GLU D 281 REMARK 465 GLU D 282 REMARK 465 VAL D 283 REMARK 465 LYS D 284 REMARK 465 ALA D 285 REMARK 465 ILE D 286 REMARK 465 ARG D 435 REMARK 465 GLU D 436 REMARK 465 ASP D 437 REMARK 465 ASP D 438 REMARK 465 ASP D 439 REMARK 465 ASP D 440 REMARK 465 TRP D 441 REMARK 465 GLN D 442 REMARK 465 THR D 443 REMARK 465 SER D 444 REMARK 465 HIS D 445 REMARK 465 GLN D 446 REMARK 465 ASN D 447 REMARK 465 TRP D 448 REMARK 465 ASP D 449 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 286 CG1 CG2 CD1 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 ARG A 435 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 286 CG1 CG2 CD1 REMARK 470 LYS B 294 CG CD CE NZ REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 470 LYS B 333 CG CD CE NZ REMARK 470 LYS B 342 CG CD CE NZ REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 LYS B 377 CG CD CE NZ REMARK 470 GLU B 404 CG CD OE1 OE2 REMARK 470 ARG B 435 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 287 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 294 CG CD CE NZ REMARK 470 LYS C 358 CG CD CE NZ REMARK 470 LYS C 370 CG CD CE NZ REMARK 470 GLU C 404 CG CD OE1 OE2 REMARK 470 LYS C 408 CG CD CE NZ REMARK 470 GLU C 419 CG CD OE1 OE2 REMARK 470 LYS C 421 CG CD CE NZ REMARK 470 GLU C 436 CG CD OE1 OE2 REMARK 470 ARG D 287 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 294 CG CD CE NZ REMARK 470 LYS D 333 CG CD CE NZ REMARK 470 LYS D 358 CG CD CE NZ REMARK 470 LYS D 408 CG CD CE NZ REMARK 470 GLU D 419 CG CD OE1 OE2 REMARK 470 LYS D 421 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 300 -54.90 -125.88 REMARK 500 ALA A 301 -99.86 -129.14 REMARK 500 THR A 302 -26.22 -141.01 REMARK 500 SER A 303 -156.10 -134.29 REMARK 500 TRP A 374 -149.85 -101.09 REMARK 500 GLU A 378 67.99 65.50 REMARK 500 GLU A 393 -22.95 -140.96 REMARK 500 SER B 303 -159.68 -126.67 REMARK 500 SER B 349 76.86 -67.83 REMARK 500 TRP B 374 -144.28 -102.68 REMARK 500 GLU B 378 65.55 61.43 REMARK 500 PHE C 295 96.71 -62.88 REMARK 500 TRP C 374 -147.92 -102.65 REMARK 500 GLU C 393 -34.30 -138.30 REMARK 500 PRO D 289 108.54 -48.36 REMARK 500 TRP D 374 -117.54 -152.64 REMARK 500 GLU D 393 -18.17 -153.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 501 DBREF 4WT4 A 281 449 UNP Q9SR19 RAF2_ARATH 281 449 DBREF 4WT4 B 281 449 UNP Q9SR19 RAF2_ARATH 281 449 DBREF 4WT4 C 281 449 UNP Q9SR19 RAF2_ARATH 281 449 DBREF 4WT4 D 281 449 UNP Q9SR19 RAF2_ARATH 281 449 SEQRES 1 A 169 GLU GLU VAL LYS ALA ILE ARG ILE PRO VAL VAL ARG LEU SEQRES 2 A 169 LYS PHE GLY GLU VAL ALA GLU ALA THR SER VAL VAL VAL SEQRES 3 A 169 LEU PRO VAL CYS LYS ALA GLU GLU GLY GLU LYS LYS ILE SEQRES 4 A 169 LEU GLU ALA PRO MET GLU ILE ILE ALA GLY GLY ASP PHE SEQRES 5 A 169 LYS VAL VAL GLU ALA GLU LYS GLY TRP LYS ARG TRP VAL SEQRES 6 A 169 VAL LEU PRO SER TRP ASN PRO VAL ALA ALA ILE GLY LYS SEQRES 7 A 169 GLY GLY VAL ALA VAL SER PHE ARG ASP ASP ARG LYS VAL SEQRES 8 A 169 LEU PRO TRP ASP GLY LYS GLU GLU PRO LEU LEU VAL VAL SEQRES 9 A 169 ALA ASP ARG VAL ARG ASN VAL VAL GLU ALA ASP ASP GLY SEQRES 10 A 169 TYR TYR LEU VAL VAL ALA GLU ASN GLY LEU LYS LEU GLU SEQRES 11 A 169 LYS GLY SER ASP LEU LYS ALA ARG GLU VAL LYS GLU SER SEQRES 12 A 169 LEU GLY MET VAL VAL LEU VAL VAL ARG PRO PRO ARG GLU SEQRES 13 A 169 ASP ASP ASP ASP TRP GLN THR SER HIS GLN ASN TRP ASP SEQRES 1 B 169 GLU GLU VAL LYS ALA ILE ARG ILE PRO VAL VAL ARG LEU SEQRES 2 B 169 LYS PHE GLY GLU VAL ALA GLU ALA THR SER VAL VAL VAL SEQRES 3 B 169 LEU PRO VAL CYS LYS ALA GLU GLU GLY GLU LYS LYS ILE SEQRES 4 B 169 LEU GLU ALA PRO MET GLU ILE ILE ALA GLY GLY ASP PHE SEQRES 5 B 169 LYS VAL VAL GLU ALA GLU LYS GLY TRP LYS ARG TRP VAL SEQRES 6 B 169 VAL LEU PRO SER TRP ASN PRO VAL ALA ALA ILE GLY LYS SEQRES 7 B 169 GLY GLY VAL ALA VAL SER PHE ARG ASP ASP ARG LYS VAL SEQRES 8 B 169 LEU PRO TRP ASP GLY LYS GLU GLU PRO LEU LEU VAL VAL SEQRES 9 B 169 ALA ASP ARG VAL ARG ASN VAL VAL GLU ALA ASP ASP GLY SEQRES 10 B 169 TYR TYR LEU VAL VAL ALA GLU ASN GLY LEU LYS LEU GLU SEQRES 11 B 169 LYS GLY SER ASP LEU LYS ALA ARG GLU VAL LYS GLU SER SEQRES 12 B 169 LEU GLY MET VAL VAL LEU VAL VAL ARG PRO PRO ARG GLU SEQRES 13 B 169 ASP ASP ASP ASP TRP GLN THR SER HIS GLN ASN TRP ASP SEQRES 1 C 169 GLU GLU VAL LYS ALA ILE ARG ILE PRO VAL VAL ARG LEU SEQRES 2 C 169 LYS PHE GLY GLU VAL ALA GLU ALA THR SER VAL VAL VAL SEQRES 3 C 169 LEU PRO VAL CYS LYS ALA GLU GLU GLY GLU LYS LYS ILE SEQRES 4 C 169 LEU GLU ALA PRO MET GLU ILE ILE ALA GLY GLY ASP PHE SEQRES 5 C 169 LYS VAL VAL GLU ALA GLU LYS GLY TRP LYS ARG TRP VAL SEQRES 6 C 169 VAL LEU PRO SER TRP ASN PRO VAL ALA ALA ILE GLY LYS SEQRES 7 C 169 GLY GLY VAL ALA VAL SER PHE ARG ASP ASP ARG LYS VAL SEQRES 8 C 169 LEU PRO TRP ASP GLY LYS GLU GLU PRO LEU LEU VAL VAL SEQRES 9 C 169 ALA ASP ARG VAL ARG ASN VAL VAL GLU ALA ASP ASP GLY SEQRES 10 C 169 TYR TYR LEU VAL VAL ALA GLU ASN GLY LEU LYS LEU GLU SEQRES 11 C 169 LYS GLY SER ASP LEU LYS ALA ARG GLU VAL LYS GLU SER SEQRES 12 C 169 LEU GLY MET VAL VAL LEU VAL VAL ARG PRO PRO ARG GLU SEQRES 13 C 169 ASP ASP ASP ASP TRP GLN THR SER HIS GLN ASN TRP ASP SEQRES 1 D 169 GLU GLU VAL LYS ALA ILE ARG ILE PRO VAL VAL ARG LEU SEQRES 2 D 169 LYS PHE GLY GLU VAL ALA GLU ALA THR SER VAL VAL VAL SEQRES 3 D 169 LEU PRO VAL CYS LYS ALA GLU GLU GLY GLU LYS LYS ILE SEQRES 4 D 169 LEU GLU ALA PRO MET GLU ILE ILE ALA GLY GLY ASP PHE SEQRES 5 D 169 LYS VAL VAL GLU ALA GLU LYS GLY TRP LYS ARG TRP VAL SEQRES 6 D 169 VAL LEU PRO SER TRP ASN PRO VAL ALA ALA ILE GLY LYS SEQRES 7 D 169 GLY GLY VAL ALA VAL SER PHE ARG ASP ASP ARG LYS VAL SEQRES 8 D 169 LEU PRO TRP ASP GLY LYS GLU GLU PRO LEU LEU VAL VAL SEQRES 9 D 169 ALA ASP ARG VAL ARG ASN VAL VAL GLU ALA ASP ASP GLY SEQRES 10 D 169 TYR TYR LEU VAL VAL ALA GLU ASN GLY LEU LYS LEU GLU SEQRES 11 D 169 LYS GLY SER ASP LEU LYS ALA ARG GLU VAL LYS GLU SER SEQRES 12 D 169 LEU GLY MET VAL VAL LEU VAL VAL ARG PRO PRO ARG GLU SEQRES 13 D 169 ASP ASP ASP ASP TRP GLN THR SER HIS GLN ASN TRP ASP HET PO4 A 501 5 HET PO4 B 501 5 HET PO4 D 501 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 3(O4 P 3-) HELIX 1 AA1 GLY A 315 ALA A 322 1 8 HELIX 2 AA2 TRP A 350 ALA A 355 1 6 HELIX 3 AA3 GLY A 412 ARG A 418 1 7 HELIX 4 AA4 GLY B 315 ALA B 322 1 8 HELIX 5 AA5 TRP B 350 ALA B 355 1 6 HELIX 6 AA6 GLY B 412 ARG B 418 1 7 HELIX 7 AA7 GLY C 296 ALA C 301 1 6 HELIX 8 AA8 GLU C 314 ALA C 322 1 9 HELIX 9 AA9 TRP C 350 ALA C 355 1 6 HELIX 10 AB1 VAL C 388 ASN C 390 5 3 HELIX 11 AB2 GLY C 412 ARG C 418 1 7 HELIX 12 AB3 GLY D 296 ALA D 301 1 6 HELIX 13 AB4 GLY D 315 ALA D 322 1 8 HELIX 14 AB5 TRP D 350 ALA D 355 1 6 HELIX 15 AB6 VAL D 388 ASN D 390 5 3 HELIX 16 AB7 GLY D 412 ARG D 418 1 7 SHEET 1 AA1 4 VAL A 290 ARG A 292 0 SHEET 2 AA1 4 GLY A 425 ARG A 432 1 SHEET 3 AA1 4 TYR A 398 ALA A 403 -1 SHEET 4 AA1 4 GLY A 406 LYS A 411 -1 SHEET 1 AA2 8 VAL A 290 ARG A 292 0 SHEET 2 AA2 8 GLY A 425 ARG A 432 1 SHEET 3 AA2 8 LEU A 381 ASP A 386 -1 SHEET 4 AA2 8 GLY A 360 PHE A 365 -1 SHEET 5 AA2 8 VAL A 304 LYS A 311 1 SHEET 6 AA2 8 ARG A 343 PRO A 348 -1 SHEET 7 AA2 8 VAL C 334 GLU C 336 -1 SHEET 8 AA2 8 ALA C 328 GLY C 329 -1 SHEET 1 AA3 8 ILE A 326 GLY A 329 0 SHEET 2 AA3 8 VAL A 334 ALA A 337 -1 SHEET 3 AA3 8 ARG C 343 PRO C 348 -1 SHEET 4 AA3 8 VAL C 304 LYS C 311 -1 SHEET 5 AA3 8 GLY C 360 PHE C 365 1 SHEET 6 AA3 8 LEU C 381 ASP C 386 -1 SHEET 7 AA3 8 GLY C 425 ARG C 432 -1 SHEET 8 AA3 8 VAL C 290 ARG C 292 1 SHEET 1 AA4 9 ILE A 326 GLY A 329 0 SHEET 2 AA4 9 VAL A 334 ALA A 337 -1 SHEET 3 AA4 9 ARG C 343 PRO C 348 -1 SHEET 4 AA4 9 VAL C 304 LYS C 311 -1 SHEET 5 AA4 9 GLY C 360 PHE C 365 1 SHEET 6 AA4 9 LEU C 381 ASP C 386 -1 SHEET 7 AA4 9 GLY C 425 ARG C 432 -1 SHEET 8 AA4 9 TYR C 398 VAL C 402 -1 SHEET 9 AA4 9 LEU C 407 LYS C 411 -1 SHEET 1 BA1 4 GLY B 425 ARG B 432 0 SHEET 2 BA1 4 TYR B 398 ALA B 403 1 SHEET 3 BA1 4 GLY B 406 LYS B 411 -1 SHEET 1 BA2 8 VAL B 290 ARG B 292 0 SHEET 2 BA2 8 GLY B 425 ARG B 432 1 SHEET 3 BA2 8 LEU B 381 ASP B 386 -1 SHEET 4 BA2 8 GLY B 360 PHE B 365 -1 SHEET 5 BA2 8 VAL B 304 LYS B 311 1 SHEET 6 BA2 8 ARG B 343 PRO B 348 -1 SHEET 7 BA2 8 VAL D 334 GLU D 336 -1 SHEET 8 BA2 8 ALA D 328 GLY D 329 -1 SHEET 1 BA3 8 ILE B 326 GLY B 329 0 SHEET 2 BA3 8 VAL B 334 ALA B 337 -1 SHEET 3 BA3 8 ARG D 343 PRO D 348 -1 SHEET 4 BA3 8 VAL D 304 LYS D 311 -1 SHEET 5 BA3 8 GLY D 360 PHE D 365 1 SHEET 6 BA3 8 LEU D 381 ASP D 386 -1 SHEET 7 BA3 8 GLY D 425 ARG D 432 -1 SHEET 8 BA3 8 VAL D 290 ARG D 292 1 SHEET 1 BA4 9 ILE B 326 GLY B 329 0 SHEET 2 BA4 9 VAL B 334 ALA B 337 -1 SHEET 3 BA4 9 ARG D 343 PRO D 348 -1 SHEET 4 BA4 9 VAL D 304 LYS D 311 -1 SHEET 5 BA4 9 GLY D 360 PHE D 365 1 SHEET 6 BA4 9 LEU D 381 ASP D 386 -1 SHEET 7 BA4 9 GLY D 425 ARG D 432 -1 SHEET 8 BA4 9 TYR D 398 VAL D 402 -1 SHEET 9 BA4 9 LEU D 407 LYS D 411 -1 SITE 1 AC1 6 ALA A 312 GLU A 313 PHE A 365 ARG A 366 SITE 2 AC1 6 ASP A 367 LYS A 370 SITE 1 AC2 5 ALA B 312 GLU B 313 ARG B 366 ASP B 367 SITE 2 AC2 5 LYS B 370 SITE 1 AC3 4 ALA D 312 GLU D 313 PHE D 365 ARG D 366 CRYST1 157.538 34.361 106.885 90.00 93.67 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006348 0.000000 0.000407 0.00000 SCALE2 0.000000 0.029103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009375 0.00000