HEADER TRANSFERASE 30-OCT-14 4WTO OBSLTE 03-JUN-20 4WTO 6KJB TITLE NATURAL SOURCE ASPARTATE CARBAMOYLTRANSFERASE IN E.COIL (LIGAND-FREE TITLE 2 AND ZINC-FREE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ASPARTATE TRANSCARBAMYLASE, ATCASE; COMPND 5 EC: 2.1.3.2; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: UNP RESIDUES 1-153 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: DL41; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 STRAIN: DL41 KEYWDS NATURAL SOURCE, ATCASE, LIGAND-FREE, ZINC-FREE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.NAN,Z.JIMIN,J.ZONGCHAO REVDAT 3 03-JUN-20 4WTO 1 OBSLTE REMARK REVDAT 2 07-OCT-15 4WTO 1 REMARK REVDAT 1 12-NOV-14 4WTO 0 JRNL AUTH W.NAN JRNL TITL NATURAL SOURCE ASPARTATE CARBAMOYLTRANSFERASE IN E.COIL JRNL TITL 2 (LIGAND-FREE AND ZINC-FREE) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 80247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.083 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 37.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.92900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0 10% GLYCEROL 10% REMARK 280 PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.90600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.47350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.06933 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 64.90600 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 37.47350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.06933 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 64.90600 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 37.47350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.06933 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.94699 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 132.13867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 74.94699 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 132.13867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 74.94699 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 132.13867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE2 PHE B 65 NH1 ARG B 85 0.26 REMARK 500 N ARG B 14 OE1 GLU B 62 0.35 REMARK 500 CZ PHE B 65 CZ ARG B 85 0.69 REMARK 500 CE1 PHE B 65 NE ARG B 85 0.80 REMARK 500 CG LEU C 308 CD2 LEU C 310 0.85 REMARK 500 NH1 ARG B 130 OD1 ASP B 133 0.85 REMARK 500 CE1 PHE B 65 CZ ARG B 85 0.92 REMARK 500 CA LYS B 13 OE2 GLU B 62 0.97 REMARK 500 OD1 ASP B 19 ND1 HIS B 20 1.02 REMARK 500 OD1 ASP D 19 ND1 HIS D 20 1.06 REMARK 500 O GLU B 62 ND2 ASN B 63 1.07 REMARK 500 CB LYS B 13 OE2 GLU B 62 1.10 REMARK 500 CZ PHE B 65 NH1 ARG B 85 1.13 REMARK 500 O GLU D 10 NZ LYS D 60 1.14 REMARK 500 O VAL B 83 OG SER B 95 1.14 REMARK 500 N ARG B 14 CD GLU B 62 1.15 REMARK 500 O VAL D 83 OG SER D 95 1.35 REMARK 500 CE1 PHE B 65 NH2 ARG B 85 1.62 REMARK 500 C LYS B 13 OE1 GLU B 62 1.63 REMARK 500 C GLU B 62 ND2 ASN B 63 1.67 REMARK 500 O SER D 50 OE1 GLU D 52 1.71 REMARK 500 OG1 THR D 16 O THR D 64 1.71 REMARK 500 OG SER B 67 OD1 ASP B 69 1.77 REMARK 500 CD1 LEU C 308 CD2 LEU C 310 1.77 REMARK 500 NH2 ARG A 17 OD2 ASP C 180 1.78 REMARK 500 CD1 PHE B 65 CZ ARG B 85 1.79 REMARK 500 O GLY B 54 NH1 ARG B 55 1.79 REMARK 500 OG SER D 50 OE2 GLU D 52 1.81 REMARK 500 CG2 ILE D 42 CD1 ILE D 44 1.84 REMARK 500 CA PRO D 49 O GLY D 54 1.87 REMARK 500 CZ PHE B 65 NH2 ARG B 85 1.88 REMARK 500 ND2 ASN A 154 ND2 ASN C 154 1.89 REMARK 500 O SER D 50 N GLU D 52 1.89 REMARK 500 N ARG B 14 OE2 GLU B 62 1.91 REMARK 500 CA SER D 50 OE2 GLU D 52 1.93 REMARK 500 OE1 GLU D 52 N GLY D 54 1.93 REMARK 500 OD2 ASP A 180 NH2 ARG C 17 1.95 REMARK 500 N SER D 50 O GLY D 54 1.97 REMARK 500 O ASP D 87 CA GLU D 90 1.99 REMARK 500 CD1 PHE B 65 NE ARG B 85 1.99 REMARK 500 CB LYS B 13 CD GLU B 62 2.01 REMARK 500 NH1 ARG B 130 CG ASP B 133 2.02 REMARK 500 N ASP D 87 O GLU D 90 2.03 REMARK 500 OG SER C 214 OE2 GLU C 216 2.04 REMARK 500 CD1 PHE B 65 NH2 ARG B 85 2.06 REMARK 500 OG SER A 214 OE2 GLU A 216 2.09 REMARK 500 CA LYS B 13 CD GLU B 62 2.09 REMARK 500 O THR B 16 O ILE B 61 2.09 REMARK 500 OD2 ASP D 72 OG SER D 98 2.10 REMARK 500 C ARG B 14 OE1 GLU B 62 2.10 REMARK 500 REMARK 500 THIS ENTRY HAS 66 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B 8 O ILE D 12 5555 1.86 REMARK 500 ND2 ASN B 47 O GLN D 40 5555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 75 CB - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 SER A 76 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 PRO B 49 C - N - CD ANGL. DEV. = -44.2 DEGREES REMARK 500 ARG C 56 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP C 75 N - CA - C ANGL. DEV. = -25.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 41 1.88 81.27 REMARK 500 ASP A 75 -10.08 82.60 REMARK 500 SER A 76 5.13 58.89 REMARK 500 THR A 79 -102.98 -112.35 REMARK 500 SER A 80 -72.13 -126.91 REMARK 500 LYS A 84 59.22 -28.70 REMARK 500 ASN A 132 -82.52 -103.64 REMARK 500 PHE A 247 26.22 -142.82 REMARK 500 LEU A 267 152.44 85.17 REMARK 500 VAL A 270 -89.40 -103.36 REMARK 500 HIS B 3 -78.30 132.82 REMARK 500 GLN B 8 -26.37 -169.03 REMARK 500 LYS B 13 -165.39 -168.15 REMARK 500 HIS B 20 76.72 58.50 REMARK 500 MET B 53 107.62 60.87 REMARK 500 ARG B 55 159.73 87.74 REMARK 500 LYS B 56 -150.04 170.01 REMARK 500 ASN B 63 -20.15 105.21 REMARK 500 ASN B 105 -52.69 72.91 REMARK 500 ALA B 152 -74.73 -57.36 REMARK 500 HIS C 41 3.27 80.16 REMARK 500 ASP C 75 155.07 86.55 REMARK 500 THR C 79 -97.31 -117.72 REMARK 500 SER C 80 -80.14 -130.98 REMARK 500 ASN C 132 -81.78 -102.52 REMARK 500 LEU C 267 151.45 86.80 REMARK 500 VAL C 270 -86.51 -106.13 REMARK 500 HIS D 3 -40.44 140.49 REMARK 500 LYS D 6 -172.81 166.77 REMARK 500 LYS D 13 -163.39 174.08 REMARK 500 MET D 53 -3.03 81.25 REMARK 500 LYS D 56 -153.62 -154.62 REMARK 500 ASN D 63 18.84 82.94 REMARK 500 TYR D 89 24.27 48.86 REMARK 500 ASN D 105 -55.41 73.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 244 ALA A 245 145.91 REMARK 500 VAL A 309 LEU A 310 -147.89 REMARK 500 ASN B 5 LYS B 6 146.83 REMARK 500 ALA D 118 GLU D 119 -140.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 4WTO A 1 310 UNP A7ZVC7 PYRB_ECO24 2 311 DBREF 4WTO B 1 153 UNP A7ZVC6 PYRI_ECO24 1 153 DBREF 4WTO C 1 310 UNP A7ZVC7 PYRB_ECO24 2 311 DBREF 4WTO D 1 153 UNP A7ZVC6 PYRI_ECO24 1 153 SEQADV 4WTO ALA A 268 UNP A7ZVC7 PRO 269 CONFLICT SEQADV 4WTO ALA C 268 UNP A7ZVC7 PRO 269 CONFLICT SEQRES 1 A 310 ALA ASN PRO LEU TYR GLN LYS HIS ILE ILE SER ILE ASN SEQRES 2 A 310 ASP LEU SER ARG ASP ASP LEU ASN LEU VAL LEU ALA THR SEQRES 3 A 310 ALA ALA LYS LEU LYS ALA ASN PRO GLN PRO GLU LEU LEU SEQRES 4 A 310 LYS HIS LYS VAL ILE ALA SER CYS PHE PHE GLU ALA SER SEQRES 5 A 310 THR ARG THR ARG LEU SER PHE GLU THR SER MET HIS ARG SEQRES 6 A 310 LEU GLY ALA SER VAL VAL GLY PHE SER ASP SER ALA ASN SEQRES 7 A 310 THR SER LEU GLY LYS LYS GLY GLU THR LEU ALA ASP THR SEQRES 8 A 310 ILE SER VAL ILE SER THR TYR VAL ASP ALA ILE VAL MET SEQRES 9 A 310 ARG HIS PRO GLN GLU GLY ALA ALA ARG LEU ALA THR GLU SEQRES 10 A 310 PHE SER GLY ASN VAL PRO VAL LEU ASN ALA GLY ASP GLY SEQRES 11 A 310 SER ASN GLN HIS PRO THR GLN THR LEU LEU ASP LEU PHE SEQRES 12 A 310 THR ILE GLN GLU THR GLN GLY ARG LEU ASP ASN LEU HIS SEQRES 13 A 310 VAL ALA MET VAL GLY ASP LEU LYS TYR GLY ARG THR VAL SEQRES 14 A 310 HIS SER LEU THR GLN ALA LEU ALA LYS PHE ASP GLY ASN SEQRES 15 A 310 ARG PHE TYR PHE ILE ALA PRO ASP ALA LEU ALA MET PRO SEQRES 16 A 310 GLN TYR ILE LEU ASP MET LEU ASP GLU LYS GLY ILE ALA SEQRES 17 A 310 TRP SER LEU HIS SER SER ILE GLU GLU VAL MET ALA GLU SEQRES 18 A 310 VAL ASP ILE LEU TYR MET THR ARG VAL GLN LYS GLU ARG SEQRES 19 A 310 LEU ASP PRO SER GLU TYR ALA ASN VAL LYS ALA GLN PHE SEQRES 20 A 310 VAL LEU ARG ALA SER ASP LEU HIS ASN ALA LYS ALA ASN SEQRES 21 A 310 MET LYS VAL LEU HIS PRO LEU ALA ARG VAL ASP GLU ILE SEQRES 22 A 310 ALA THR ASP VAL ASP LYS THR PRO HIS ALA TRP TYR PHE SEQRES 23 A 310 GLN GLN ALA GLY ASN GLY ILE PHE ALA ARG GLN ALA LEU SEQRES 24 A 310 LEU ALA LEU VAL LEU ASN ARG ASP LEU VAL LEU SEQRES 1 B 153 MET THR HIS ASP ASN LYS LEU GLN VAL GLU ALA ILE LYS SEQRES 2 B 153 ARG GLY THR VAL ILE ASP HIS ILE PRO ALA GLN ILE GLY SEQRES 3 B 153 PHE LYS LEU LEU SER LEU PHE LYS LEU THR GLU THR ASP SEQRES 4 B 153 GLN ARG ILE THR ILE GLY LEU ASN LEU PRO SER GLY GLU SEQRES 5 B 153 MET GLY ARG LYS ASP LEU ILE LYS ILE GLU ASN THR PHE SEQRES 6 B 153 LEU SER GLU ASP GLN VAL ASP GLN LEU ALA LEU TYR ALA SEQRES 7 B 153 PRO GLN ALA THR VAL ASN ARG ILE ASP ASN TYR GLU VAL SEQRES 8 B 153 VAL GLY LYS SER ARG PRO SER LEU PRO GLU ARG ILE ASP SEQRES 9 B 153 ASN VAL LEU VAL CYS PRO ASN SER ASN CYS ILE SER HIS SEQRES 10 B 153 ALA GLU PRO VAL SER SER SER PHE ALA VAL ARG LYS ARG SEQRES 11 B 153 ALA ASN ASP ILE ALA LEU LYS CYS LYS TYR CYS GLU LYS SEQRES 12 B 153 GLU PHE SER HIS ASN VAL VAL LEU ALA ASN SEQRES 1 C 310 ALA ASN PRO LEU TYR GLN LYS HIS ILE ILE SER ILE ASN SEQRES 2 C 310 ASP LEU SER ARG ASP ASP LEU ASN LEU VAL LEU ALA THR SEQRES 3 C 310 ALA ALA LYS LEU LYS ALA ASN PRO GLN PRO GLU LEU LEU SEQRES 4 C 310 LYS HIS LYS VAL ILE ALA SER CYS PHE PHE GLU ALA SER SEQRES 5 C 310 THR ARG THR ARG LEU SER PHE GLU THR SER MET HIS ARG SEQRES 6 C 310 LEU GLY ALA SER VAL VAL GLY PHE SER ASP SER ALA ASN SEQRES 7 C 310 THR SER LEU GLY LYS LYS GLY GLU THR LEU ALA ASP THR SEQRES 8 C 310 ILE SER VAL ILE SER THR TYR VAL ASP ALA ILE VAL MET SEQRES 9 C 310 ARG HIS PRO GLN GLU GLY ALA ALA ARG LEU ALA THR GLU SEQRES 10 C 310 PHE SER GLY ASN VAL PRO VAL LEU ASN ALA GLY ASP GLY SEQRES 11 C 310 SER ASN GLN HIS PRO THR GLN THR LEU LEU ASP LEU PHE SEQRES 12 C 310 THR ILE GLN GLU THR GLN GLY ARG LEU ASP ASN LEU HIS SEQRES 13 C 310 VAL ALA MET VAL GLY ASP LEU LYS TYR GLY ARG THR VAL SEQRES 14 C 310 HIS SER LEU THR GLN ALA LEU ALA LYS PHE ASP GLY ASN SEQRES 15 C 310 ARG PHE TYR PHE ILE ALA PRO ASP ALA LEU ALA MET PRO SEQRES 16 C 310 GLN TYR ILE LEU ASP MET LEU ASP GLU LYS GLY ILE ALA SEQRES 17 C 310 TRP SER LEU HIS SER SER ILE GLU GLU VAL MET ALA GLU SEQRES 18 C 310 VAL ASP ILE LEU TYR MET THR ARG VAL GLN LYS GLU ARG SEQRES 19 C 310 LEU ASP PRO SER GLU TYR ALA ASN VAL LYS ALA GLN PHE SEQRES 20 C 310 VAL LEU ARG ALA SER ASP LEU HIS ASN ALA LYS ALA ASN SEQRES 21 C 310 MET LYS VAL LEU HIS PRO LEU ALA ARG VAL ASP GLU ILE SEQRES 22 C 310 ALA THR ASP VAL ASP LYS THR PRO HIS ALA TRP TYR PHE SEQRES 23 C 310 GLN GLN ALA GLY ASN GLY ILE PHE ALA ARG GLN ALA LEU SEQRES 24 C 310 LEU ALA LEU VAL LEU ASN ARG ASP LEU VAL LEU SEQRES 1 D 153 MET THR HIS ASP ASN LYS LEU GLN VAL GLU ALA ILE LYS SEQRES 2 D 153 ARG GLY THR VAL ILE ASP HIS ILE PRO ALA GLN ILE GLY SEQRES 3 D 153 PHE LYS LEU LEU SER LEU PHE LYS LEU THR GLU THR ASP SEQRES 4 D 153 GLN ARG ILE THR ILE GLY LEU ASN LEU PRO SER GLY GLU SEQRES 5 D 153 MET GLY ARG LYS ASP LEU ILE LYS ILE GLU ASN THR PHE SEQRES 6 D 153 LEU SER GLU ASP GLN VAL ASP GLN LEU ALA LEU TYR ALA SEQRES 7 D 153 PRO GLN ALA THR VAL ASN ARG ILE ASP ASN TYR GLU VAL SEQRES 8 D 153 VAL GLY LYS SER ARG PRO SER LEU PRO GLU ARG ILE ASP SEQRES 9 D 153 ASN VAL LEU VAL CYS PRO ASN SER ASN CYS ILE SER HIS SEQRES 10 D 153 ALA GLU PRO VAL SER SER SER PHE ALA VAL ARG LYS ARG SEQRES 11 D 153 ALA ASN ASP ILE ALA LEU LYS CYS LYS TYR CYS GLU LYS SEQRES 12 D 153 GLU PHE SER HIS ASN VAL VAL LEU ALA ASN HELIX 1 AA1 SER A 11 LEU A 15 5 5 HELIX 2 AA2 SER A 16 ASN A 33 1 18 HELIX 3 AA3 SER A 52 LEU A 66 1 15 HELIX 4 AA4 THR A 87 SER A 96 1 10 HELIX 5 AA5 GLY A 110 GLU A 117 1 8 HELIX 6 AA6 HIS A 134 GLY A 150 1 17 HELIX 7 AA7 GLY A 166 ALA A 177 1 12 HELIX 8 AA8 PRO A 189 ALA A 193 5 5 HELIX 9 AA9 PRO A 195 LYS A 205 1 11 HELIX 10 AB1 VAL A 218 VAL A 222 5 5 HELIX 11 AB2 GLN A 231 LEU A 235 5 5 HELIX 12 AB3 ASP A 236 LYS A 244 1 9 HELIX 13 AB4 ARG A 250 HIS A 255 5 6 HELIX 14 AB5 ALA A 274 THR A 280 5 7 HELIX 15 AB6 TRP A 284 ASN A 305 1 22 HELIX 16 AB7 ILE B 25 LYS B 34 1 10 HELIX 17 AB8 SER B 67 GLN B 73 1 7 HELIX 18 AB9 CYS B 114 GLU B 119 5 6 HELIX 19 AC1 HIS B 147 ASN B 153 1 7 HELIX 20 AC2 SER C 11 LEU C 15 5 5 HELIX 21 AC3 SER C 16 ASN C 33 1 18 HELIX 22 AC4 SER C 52 LEU C 66 1 15 HELIX 23 AC5 THR C 87 SER C 96 1 10 HELIX 24 AC6 GLY C 110 GLU C 117 1 8 HELIX 25 AC7 HIS C 134 GLY C 150 1 17 HELIX 26 AC8 GLY C 166 ALA C 177 1 12 HELIX 27 AC9 PRO C 189 ALA C 193 5 5 HELIX 28 AD1 PRO C 195 LYS C 205 1 11 HELIX 29 AD2 VAL C 218 VAL C 222 5 5 HELIX 30 AD3 GLN C 231 LEU C 235 5 5 HELIX 31 AD4 ASP C 236 LYS C 244 1 9 HELIX 32 AD5 ARG C 250 HIS C 255 5 6 HELIX 33 AD6 ALA C 274 THR C 280 5 7 HELIX 34 AD7 TRP C 284 ASN C 305 1 22 HELIX 35 AD8 ILE D 25 PHE D 33 1 9 HELIX 36 AD9 SER D 67 GLN D 73 1 7 HELIX 37 AE1 CYS D 114 GLU D 119 5 6 HELIX 38 AE2 HIS D 147 ASN D 153 1 7 SHEET 1 AA1 4 SER A 69 SER A 74 0 SHEET 2 AA1 4 VAL A 43 PHE A 48 1 N PHE A 48 O PHE A 73 SHEET 3 AA1 4 ALA A 101 HIS A 106 1 O VAL A 103 N ALA A 45 SHEET 4 AA1 4 VAL A 124 ASP A 129 1 O ALA A 127 N MET A 104 SHEET 1 AA2 5 ALA A 208 LEU A 211 0 SHEET 2 AA2 5 ARG A 183 ILE A 187 1 N PHE A 186 O SER A 210 SHEET 3 AA2 5 HIS A 156 VAL A 160 1 N MET A 159 O ILE A 187 SHEET 4 AA2 5 ILE A 224 MET A 227 1 O ILE A 224 N ALA A 158 SHEET 5 AA2 5 LYS A 262 LEU A 264 1 O LYS A 262 N LEU A 225 SHEET 1 AA3 5 ILE B 42 LEU B 48 0 SHEET 2 AA3 5 LYS B 56 GLU B 62 -1 O LYS B 56 N LEU B 48 SHEET 3 AA3 5 GLY B 15 ILE B 21 -1 N ILE B 21 O ASP B 57 SHEET 4 AA3 5 THR B 82 ASP B 87 -1 O THR B 82 N ASP B 19 SHEET 5 AA3 5 GLU B 90 SER B 95 -1 O GLU B 90 N ASP B 87 SHEET 1 AA4 4 ARG B 102 ASP B 104 0 SHEET 2 AA4 4 SER B 124 ARG B 130 -1 O PHE B 125 N ILE B 103 SHEET 3 AA4 4 ASP B 133 CYS B 138 -1 O ALA B 135 N ARG B 128 SHEET 4 AA4 4 GLU B 144 SER B 146 -1 O PHE B 145 N LEU B 136 SHEET 1 AA5 4 SER C 69 SER C 74 0 SHEET 2 AA5 4 VAL C 43 PHE C 48 1 N PHE C 48 O PHE C 73 SHEET 3 AA5 4 ALA C 101 HIS C 106 1 O VAL C 103 N ALA C 45 SHEET 4 AA5 4 VAL C 124 ASP C 129 1 O ALA C 127 N MET C 104 SHEET 1 AA6 5 ALA C 208 LEU C 211 0 SHEET 2 AA6 5 ARG C 183 ILE C 187 1 N PHE C 186 O SER C 210 SHEET 3 AA6 5 HIS C 156 VAL C 160 1 N MET C 159 O ILE C 187 SHEET 4 AA6 5 ILE C 224 MET C 227 1 O TYR C 226 N ALA C 158 SHEET 5 AA6 5 LYS C 262 LEU C 264 1 O LEU C 264 N LEU C 225 SHEET 1 AA7 4 ILE D 42 SER D 50 0 SHEET 2 AA7 4 GLY D 54 ILE D 61 -1 O LYS D 56 N LEU D 48 SHEET 3 AA7 4 VAL D 17 ILE D 21 -1 N ILE D 21 O ASP D 57 SHEET 4 AA7 4 THR D 82 ASN D 84 -1 O THR D 82 N ASP D 19 SHEET 1 AA8 4 ARG D 102 ASP D 104 0 SHEET 2 AA8 4 SER D 124 ARG D 130 -1 O PHE D 125 N ILE D 103 SHEET 3 AA8 4 ASP D 133 CYS D 138 -1 O ALA D 135 N ARG D 128 SHEET 4 AA8 4 GLU D 144 SER D 146 -1 O PHE D 145 N LEU D 136 LINK C LYS B 13 CD GLU B 62 1555 1555 1.47 LINK C LYS B 13 OE2 GLU B 62 1555 1555 1.45 LINK CA ARG B 14 OE1 GLU B 62 1555 1555 1.15 LINK OD1 ASP B 19 CE1 HIS B 20 1555 1555 1.41 LINK CD2 PHE B 65 NH1 ARG B 85 1555 1555 1.47 LINK CE2 PHE B 65 CZ ARG B 85 1555 1555 1.57 LINK CZ PHE B 65 NE ARG B 85 1555 1555 1.39 LINK CB LEU C 308 CD2 LEU C 310 1555 1555 1.53 LINK CD2 LEU C 308 CD2 LEU C 310 1555 1555 1.42 LINK OD1 ASP D 19 CE1 HIS D 20 1555 1555 1.50 LINK CB SER D 50 OE2 GLU D 52 1555 1555 1.19 LINK O ASP D 87 CB GLU D 90 1555 1555 1.14 CISPEP 1 LEU A 267 ALA A 268 0 0.87 CISPEP 2 LEU C 267 ALA C 268 0 -1.52 CRYST1 129.812 129.812 198.208 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007703 0.004448 0.000000 0.00000 SCALE2 0.000000 0.008895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005045 0.00000