data_4WU4 # _entry.id 4WU4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4WU4 WWPDB D_1000204503 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4WSZ PDB . unspecified 4WU4 PDB . unspecified 4WUH PDB . unspecified 4WUL PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4WU4 _pdbx_database_status.recvd_initial_deposition_date 2014-10-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Davlieva, M.' 1 'Shamoo, Y.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 43 _citation.language ? _citation.page_first 4758 _citation.page_last 4773 _citation.title ;A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin. ; _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkv321 _citation.pdbx_database_id_PubMed 25897118 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Davlieva, M.' 1 ? primary 'Shi, Y.' 2 ? primary 'Leonard, P.G.' 3 ? primary 'Johnson, T.A.' 4 ? primary 'Zianni, M.R.' 5 ? primary 'Arias, C.A.' 6 ? primary 'Ladbury, J.E.' 7 ? primary 'Shamoo, Y.' 8 ? # _cell.entry_id 4WU4 _cell.length_a 38.336 _cell.length_b 77.248 _cell.length_c 104.987 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WU4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Response regulator receiver domain protein' 7710.860 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*GP*GP*AP*CP*TP*TP*AP*AP*GP*AP*AP*CP*GP*AP*TP*TP*T)-3') ; 5250.434 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*AP*AP*AP*TP*CP*GP*TP*TP*CP*TP*TP*AP*AP*GP*TP*CP*C)-3') ; 5161.372 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 water nat water 18.015 102 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDNRTQAAIYAFQHGLAK MVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDNRTQAAIYAFQHGLAK A,B ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DC)(DT)(DT)(DA)(DA)(DG)(DA)(DA)(DC)(DG)(DA)(DT)(DT)(DT)' GGACTTAAGAACGATTT G ? 3 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DT)(DC)(DG)(DT)(DT)(DC)(DT)(DT)(DA)(DA)(DG)(DT)(DC)(DC)' AAATCGTTCTTAAGTCC H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 LEU n 1 4 HIS n 1 5 GLU n 1 6 ASP n 1 7 LEU n 1 8 THR n 1 9 ASN n 1 10 ARG n 1 11 GLU n 1 12 HIS n 1 13 GLU n 1 14 ILE n 1 15 LEU n 1 16 MET n 1 17 LEU n 1 18 ILE n 1 19 ALA n 1 20 GLN n 1 21 GLY n 1 22 LYS n 1 23 SER n 1 24 ASN n 1 25 GLN n 1 26 GLU n 1 27 ILE n 1 28 ALA n 1 29 ASP n 1 30 GLU n 1 31 LEU n 1 32 PHE n 1 33 ILE n 1 34 THR n 1 35 LEU n 1 36 LYS n 1 37 THR n 1 38 VAL n 1 39 LYS n 1 40 THR n 1 41 HIS n 1 42 VAL n 1 43 SER n 1 44 ASN n 1 45 ILE n 1 46 LEU n 1 47 ALA n 1 48 LYS n 1 49 LEU n 1 50 ASP n 1 51 VAL n 1 52 ASP n 1 53 ASN n 1 54 ARG n 1 55 THR n 1 56 GLN n 1 57 ALA n 1 58 ALA n 1 59 ILE n 1 60 TYR n 1 61 ALA n 1 62 PHE n 1 63 GLN n 1 64 HIS n 1 65 GLY n 1 66 LEU n 1 67 ALA n 1 68 LYS n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DC n 2 5 DT n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DA n 2 12 DC n 2 13 DG n 2 14 DA n 2 15 DT n 2 16 DT n 2 17 DT n 3 1 DA n 3 2 DA n 3 3 DA n 3 4 DT n 3 5 DC n 3 6 DG n 3 7 DT n 3 8 DT n 3 9 DC n 3 10 DT n 3 11 DT n 3 12 DA n 3 13 DA n 3 14 DG n 3 15 DT n 3 16 DC n 3 17 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 68 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name ? _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETDuet _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 17 'Enterococcus faecalis S613' ? 699185 ? 3 1 sample 1 17 'Enterococcus faecalis S613' ? 699185 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP R3G073_ENTFL R3G073 ? 1 VLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGLAK 144 2 PDB 4WU4 4WU4 ? 2 ? 1 3 PDB 4WU4 4WU4 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4WU4 A 2 ? 68 ? R3G073 144 ? 210 ? 140 206 2 1 4WU4 B 2 ? 68 ? R3G073 144 ? 210 ? 140 206 3 2 4WU4 G 1 ? 17 ? 4WU4 -86 ? -102 ? -86 -102 4 3 4WU4 H 1 ? 17 ? 4WU4 -102 ? -86 ? -102 -86 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4WU4 MET A 1 ? UNP R3G073 ? ? 'initiating methionine' 139 1 1 4WU4 ASN A 53 ? UNP R3G073 ASP 195 'engineered mutation' 191 2 2 4WU4 MET B 1 ? UNP R3G073 ? ? 'initiating methionine' 139 3 2 4WU4 ASN B 53 ? UNP R3G073 ASP 195 'engineered mutation' 191 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4WU4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.03 M Bis-Tris propane /3.4, 0.07 M Citric acid, 18% PEG 3,350, 0.05% LDAO, 0.1 M Sodium malonate.' _exptl_crystal_grow.pdbx_pH_range 8.4-8.6 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'Bimorph K-B pair' _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-12-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4WU4 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.300 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.09700 _reflns.pdbx_Rsym_value 0.09700 _reflns.pdbx_netI_over_sigmaI 26.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.70 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.90400 _reflns_shell.pdbx_Rsym_value 0.90400 _reflns_shell.meanI_over_sigI_obs 2.667 _reflns_shell.pdbx_redundancy 11.70 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4WU4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13117 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.74 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 91.0 _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.263 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.030 _refine.ls_number_reflns_R_free 1316 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 35.80 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.310 _refine.pdbx_overall_phase_error 27.490 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1080 _refine_hist.pdbx_number_atoms_nucleic_acid 697 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 1891 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 28.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 1881 'X-RAY DIFFRACTION' ? f_angle_d 0.602 ? ? 2677 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 22.668 ? ? 739 'X-RAY DIFFRACTION' ? f_chiral_restr 0.026 ? ? 316 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 220 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.3041 2.3963 858 0.2681 59.00 0.3711 . . 92 . . 'X-RAY DIFFRACTION' . 2.3963 2.5053 1028 0.2560 75.00 0.3004 . . 116 . . 'X-RAY DIFFRACTION' . 2.5053 2.6373 1266 0.2330 89.00 0.3305 . . 139 . . 'X-RAY DIFFRACTION' . 2.6373 2.8024 1376 0.2435 97.00 0.2821 . . 156 . . 'X-RAY DIFFRACTION' . 2.8024 3.0186 1403 0.2471 98.00 0.2978 . . 157 . . 'X-RAY DIFFRACTION' . 3.0186 3.3220 1418 0.2184 100.00 0.3029 . . 159 . . 'X-RAY DIFFRACTION' . 3.3220 3.8017 1440 0.1850 100.00 0.2310 . . 160 . . 'X-RAY DIFFRACTION' . 3.8017 4.7862 1478 0.1669 100.00 0.2101 . . 165 . . 'X-RAY DIFFRACTION' . 4.7862 28.7393 1534 0.2058 100.00 0.2515 . . 172 . . # _struct.entry_id 4WU4 _struct.title 'Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed with 22bp DNA' _struct.pdbx_descriptor 'Response regulator LiaR' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4WU4 _struct_keywords.text 'helix-turn-helix, response regulator, enterococci, DNA binding domain, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 2 ? LEU A 7 ? VAL A 140 LEU A 145 5 ? 6 HELX_P HELX_P2 AA2 THR A 8 ? ALA A 19 ? THR A 146 ALA A 157 1 ? 12 HELX_P HELX_P3 AA3 SER A 23 ? LEU A 31 ? SER A 161 LEU A 169 1 ? 9 HELX_P HELX_P4 AA4 THR A 34 ? LEU A 49 ? THR A 172 LEU A 187 1 ? 16 HELX_P HELX_P5 AA5 ASN A 53 ? HIS A 64 ? ASN A 191 HIS A 202 1 ? 12 HELX_P HELX_P6 AA6 VAL B 2 ? LEU B 7 ? VAL B 140 LEU B 145 5 ? 6 HELX_P HELX_P7 AA7 THR B 8 ? ALA B 19 ? THR B 146 ALA B 157 1 ? 12 HELX_P HELX_P8 AA8 SER B 23 ? PHE B 32 ? SER B 161 PHE B 170 1 ? 10 HELX_P HELX_P9 AA9 THR B 34 ? LEU B 49 ? THR B 172 LEU B 187 1 ? 16 HELX_P HELX_P10 AB1 ASN B 53 ? HIS B 64 ? ASN B 191 HIS B 202 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? C DT 17 N3 ? ? ? 1_555 D DA 1 N1 ? ? G DT -102 H DA -102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C DT 17 O4 ? ? ? 1_555 D DA 1 N6 ? ? G DT -102 H DA -102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DT 16 N3 ? ? ? 1_555 D DA 2 N1 ? ? G DT -101 H DA -101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DT 16 O4 ? ? ? 1_555 D DA 2 N6 ? ? G DT -101 H DA -101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DT 15 N3 ? ? ? 1_555 D DA 3 N1 ? ? G DT -100 H DA -100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DT 15 O4 ? ? ? 1_555 D DA 3 N6 ? ? G DT -100 H DA -100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DT 4 N3 ? ? G DA -99 H DT -99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DT 4 O4 ? ? G DA -99 H DT -99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C DG 13 N1 ? ? ? 1_555 D DC 5 N3 ? ? G DG -98 H DC -98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DG 13 N2 ? ? ? 1_555 D DC 5 O2 ? ? G DG -98 H DC -98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DG 13 O6 ? ? ? 1_555 D DC 5 N4 ? ? G DG -98 H DC -98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 6 O6 ? ? G DC -97 H DG -97 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? hydrog13 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 7 N3 ? ? G DA -96 H DT -96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DA 11 N6 ? ? ? 1_555 D DT 7 O4 ? ? G DA -96 H DT -96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 8 N3 ? ? G DA -95 H DT -95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DT 8 O4 ? ? G DA -95 H DT -95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 9 N3 ? ? G DG -94 H DC -94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 9 O2 ? ? G DG -94 H DC -94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 9 N4 ? ? G DG -94 H DC -94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 10 N3 ? ? G DA -93 H DT -93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 10 O4 ? ? G DA -93 H DT -93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 11 N3 ? ? G DA -92 H DT -92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 11 O4 ? ? G DA -92 H DT -92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 12 N1 ? ? G DT -91 H DA -91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 12 N6 ? ? G DT -91 H DA -91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 13 N1 ? ? G DT -90 H DA -90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 13 N6 ? ? G DT -90 H DA -90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 14 N1 ? ? G DC -89 H DG -89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 14 O6 ? ? G DC -89 H DG -89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 14 N2 ? ? G DC -89 H DG -89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 15 N3 ? ? G DA -88 H DT -88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 15 O4 ? ? G DA -88 H DT -88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 16 N3 ? ? G DG -87 H DC -87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 16 O2 ? ? G DG -87 H DC -87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 16 N4 ? ? G DG -87 H DC -87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 17 N3 ? ? G DG -86 H DC -86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 17 O2 ? ? G DG -86 H DC -86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 17 N4 ? ? G DG -86 H DC -86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 301 ? 5 'binding site for residue GOL A 301' AC2 Software H GOL 101 ? 6 'binding site for residue GOL H 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLN A 20 ? GLN A 158 . ? 1_555 ? 2 AC1 5 HOH G . ? HOH A 422 . ? 1_555 ? 3 AC1 5 GLN B 56 ? GLN B 194 . ? 1_555 ? 4 AC1 5 TYR B 60 ? TYR B 198 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH B 304 . ? 1_555 ? 6 AC2 6 DT C 6 ? DT G -91 . ? 1_555 ? 7 AC2 6 DA C 7 ? DA G -92 . ? 1_555 ? 8 AC2 6 DG D 14 ? DG H -89 . ? 1_555 ? 9 AC2 6 DA D 13 ? DA H -90 . ? 1_555 ? 10 AC2 6 HOH J . ? HOH H 208 . ? 1_555 ? 11 AC2 6 HOH J . ? HOH H 215 . ? 1_555 ? # _atom_sites.entry_id 4WU4 _atom_sites.fract_transf_matrix[1][1] 0.026085 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012945 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009525 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _database_PDB_caveat.text ;Residue H DG -97 and Residue H DT -96 are not properly linked: distance between O3' and P is 3.21 A ; # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 139 139 MET MET A . n A 1 2 VAL 2 140 140 VAL VAL A . n A 1 3 LEU 3 141 141 LEU LEU A . n A 1 4 HIS 4 142 142 HIS HIS A . n A 1 5 GLU 5 143 143 GLU GLU A . n A 1 6 ASP 6 144 144 ASP ASP A . n A 1 7 LEU 7 145 145 LEU LEU A . n A 1 8 THR 8 146 146 THR THR A . n A 1 9 ASN 9 147 147 ASN ASN A . n A 1 10 ARG 10 148 148 ARG ARG A . n A 1 11 GLU 11 149 149 GLU GLU A . n A 1 12 HIS 12 150 150 HIS HIS A . n A 1 13 GLU 13 151 151 GLU GLU A . n A 1 14 ILE 14 152 152 ILE ILE A . n A 1 15 LEU 15 153 153 LEU LEU A . n A 1 16 MET 16 154 154 MET MET A . n A 1 17 LEU 17 155 155 LEU LEU A . n A 1 18 ILE 18 156 156 ILE ILE A . n A 1 19 ALA 19 157 157 ALA ALA A . n A 1 20 GLN 20 158 158 GLN GLN A . n A 1 21 GLY 21 159 159 GLY GLY A . n A 1 22 LYS 22 160 160 LYS LYS A . n A 1 23 SER 23 161 161 SER SER A . n A 1 24 ASN 24 162 162 ASN ASN A . n A 1 25 GLN 25 163 163 GLN GLN A . n A 1 26 GLU 26 164 164 GLU GLU A . n A 1 27 ILE 27 165 165 ILE ILE A . n A 1 28 ALA 28 166 166 ALA ALA A . n A 1 29 ASP 29 167 167 ASP ASP A . n A 1 30 GLU 30 168 168 GLU GLU A . n A 1 31 LEU 31 169 169 LEU LEU A . n A 1 32 PHE 32 170 170 PHE PHE A . n A 1 33 ILE 33 171 171 ILE ILE A . n A 1 34 THR 34 172 172 THR THR A . n A 1 35 LEU 35 173 173 LEU LEU A . n A 1 36 LYS 36 174 174 LYS LYS A . n A 1 37 THR 37 175 175 THR THR A . n A 1 38 VAL 38 176 176 VAL VAL A . n A 1 39 LYS 39 177 177 LYS LYS A . n A 1 40 THR 40 178 178 THR THR A . n A 1 41 HIS 41 179 179 HIS HIS A . n A 1 42 VAL 42 180 180 VAL VAL A . n A 1 43 SER 43 181 181 SER SER A . n A 1 44 ASN 44 182 182 ASN ASN A . n A 1 45 ILE 45 183 183 ILE ILE A . n A 1 46 LEU 46 184 184 LEU LEU A . n A 1 47 ALA 47 185 185 ALA ALA A . n A 1 48 LYS 48 186 186 LYS LYS A . n A 1 49 LEU 49 187 187 LEU LEU A . n A 1 50 ASP 50 188 188 ASP ASP A . n A 1 51 VAL 51 189 189 VAL VAL A . n A 1 52 ASP 52 190 190 ASP ASP A . n A 1 53 ASN 53 191 191 ASN ASN A . n A 1 54 ARG 54 192 192 ARG ARG A . n A 1 55 THR 55 193 193 THR THR A . n A 1 56 GLN 56 194 194 GLN GLN A . n A 1 57 ALA 57 195 195 ALA ALA A . n A 1 58 ALA 58 196 196 ALA ALA A . n A 1 59 ILE 59 197 197 ILE ILE A . n A 1 60 TYR 60 198 198 TYR TYR A . n A 1 61 ALA 61 199 199 ALA ALA A . n A 1 62 PHE 62 200 200 PHE PHE A . n A 1 63 GLN 63 201 201 GLN GLN A . n A 1 64 HIS 64 202 202 HIS HIS A . n A 1 65 GLY 65 203 203 GLY GLY A . n A 1 66 LEU 66 204 204 LEU LEU A . n A 1 67 ALA 67 205 205 ALA ALA A . n A 1 68 LYS 68 206 206 LYS LYS A . n B 1 1 MET 1 139 139 MET MET B . n B 1 2 VAL 2 140 140 VAL VAL B . n B 1 3 LEU 3 141 141 LEU LEU B . n B 1 4 HIS 4 142 142 HIS HIS B . n B 1 5 GLU 5 143 143 GLU GLU B . n B 1 6 ASP 6 144 144 ASP ASP B . n B 1 7 LEU 7 145 145 LEU LEU B . n B 1 8 THR 8 146 146 THR THR B . n B 1 9 ASN 9 147 147 ASN ASN B . n B 1 10 ARG 10 148 148 ARG ARG B . n B 1 11 GLU 11 149 149 GLU GLU B . n B 1 12 HIS 12 150 150 HIS HIS B . n B 1 13 GLU 13 151 151 GLU GLU B . n B 1 14 ILE 14 152 152 ILE ILE B . n B 1 15 LEU 15 153 153 LEU LEU B . n B 1 16 MET 16 154 154 MET MET B . n B 1 17 LEU 17 155 155 LEU LEU B . n B 1 18 ILE 18 156 156 ILE ILE B . n B 1 19 ALA 19 157 157 ALA ALA B . n B 1 20 GLN 20 158 158 GLN GLN B . n B 1 21 GLY 21 159 159 GLY GLY B . n B 1 22 LYS 22 160 160 LYS LYS B . n B 1 23 SER 23 161 161 SER SER B . n B 1 24 ASN 24 162 162 ASN ASN B . n B 1 25 GLN 25 163 163 GLN GLN B . n B 1 26 GLU 26 164 164 GLU GLU B . n B 1 27 ILE 27 165 165 ILE ILE B . n B 1 28 ALA 28 166 166 ALA ALA B . n B 1 29 ASP 29 167 167 ASP ASP B . n B 1 30 GLU 30 168 168 GLU GLU B . n B 1 31 LEU 31 169 169 LEU LEU B . n B 1 32 PHE 32 170 170 PHE PHE B . n B 1 33 ILE 33 171 171 ILE ILE B . n B 1 34 THR 34 172 172 THR THR B . n B 1 35 LEU 35 173 173 LEU LEU B . n B 1 36 LYS 36 174 174 LYS LYS B . n B 1 37 THR 37 175 175 THR THR B . n B 1 38 VAL 38 176 176 VAL VAL B . n B 1 39 LYS 39 177 177 LYS LYS B . n B 1 40 THR 40 178 178 THR THR B . n B 1 41 HIS 41 179 179 HIS HIS B . n B 1 42 VAL 42 180 180 VAL VAL B . n B 1 43 SER 43 181 181 SER SER B . n B 1 44 ASN 44 182 182 ASN ASN B . n B 1 45 ILE 45 183 183 ILE ILE B . n B 1 46 LEU 46 184 184 LEU LEU B . n B 1 47 ALA 47 185 185 ALA ALA B . n B 1 48 LYS 48 186 186 LYS LYS B . n B 1 49 LEU 49 187 187 LEU LEU B . n B 1 50 ASP 50 188 188 ASP ASP B . n B 1 51 VAL 51 189 189 VAL VAL B . n B 1 52 ASP 52 190 190 ASP ASP B . n B 1 53 ASN 53 191 191 ASN ASN B . n B 1 54 ARG 54 192 192 ARG ARG B . n B 1 55 THR 55 193 193 THR THR B . n B 1 56 GLN 56 194 194 GLN GLN B . n B 1 57 ALA 57 195 195 ALA ALA B . n B 1 58 ALA 58 196 196 ALA ALA B . n B 1 59 ILE 59 197 197 ILE ILE B . n B 1 60 TYR 60 198 198 TYR TYR B . n B 1 61 ALA 61 199 199 ALA ALA B . n B 1 62 PHE 62 200 200 PHE PHE B . n B 1 63 GLN 63 201 201 GLN GLN B . n B 1 64 HIS 64 202 202 HIS HIS B . n B 1 65 GLY 65 203 203 GLY GLY B . n B 1 66 LEU 66 204 204 LEU LEU B . n B 1 67 ALA 67 205 205 ALA ALA B . n B 1 68 LYS 68 206 206 LYS LYS B . n C 2 1 DG 1 -86 -86 DG DG G . n C 2 2 DG 2 -87 -87 DG DG G . n C 2 3 DA 3 -88 -88 DA DA G . n C 2 4 DC 4 -89 -89 DC DC G . n C 2 5 DT 5 -90 -90 DT DT G . n C 2 6 DT 6 -91 -91 DT DT G . n C 2 7 DA 7 -92 -92 DA DA G . n C 2 8 DA 8 -93 -93 DA DA G . n C 2 9 DG 9 -94 -94 DG DG G . n C 2 10 DA 10 -95 -95 DA DA G . n C 2 11 DA 11 -96 -96 DA DA G . n C 2 12 DC 12 -97 -97 DC DC G . n C 2 13 DG 13 -98 -98 DG DG G . n C 2 14 DA 14 -99 -99 DA DA G . n C 2 15 DT 15 -100 -100 DT DT G . n C 2 16 DT 16 -101 -101 DT DT G . n C 2 17 DT 17 -102 -102 DT DT G . n D 3 1 DA 1 -102 -102 DA DA H . n D 3 2 DA 2 -101 -101 DA DA H . n D 3 3 DA 3 -100 -100 DA DA H . n D 3 4 DT 4 -99 -99 DT DT H . n D 3 5 DC 5 -98 -98 DC DC H . n D 3 6 DG 6 -97 -97 DG DG H . n D 3 7 DT 7 -96 -96 DT DT H . n D 3 8 DT 8 -95 -95 DT DT H . n D 3 9 DC 9 -94 -94 DC DC H . n D 3 10 DT 10 -93 -93 DT DT H . n D 3 11 DT 11 -92 -92 DT DT H . n D 3 12 DA 12 -91 -91 DA DA H . n D 3 13 DA 13 -90 -90 DA DA H . n D 3 14 DG 14 -89 -89 DG DG H . n D 3 15 DT 15 -88 -88 DT DT H . n D 3 16 DC 16 -87 -87 DC DC H . n D 3 17 DC 17 -86 -86 DC DC H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL 1 301 301 GOL GOL A . F 4 GOL 1 101 101 GOL GOL H . G 5 HOH 1 401 401 HOH HOH A . G 5 HOH 2 402 402 HOH HOH A . G 5 HOH 3 403 403 HOH HOH A . G 5 HOH 4 404 404 HOH HOH A . G 5 HOH 5 405 405 HOH HOH A . G 5 HOH 6 406 406 HOH HOH A . G 5 HOH 7 407 407 HOH HOH A . G 5 HOH 8 408 408 HOH HOH A . G 5 HOH 9 409 409 HOH HOH A . G 5 HOH 10 410 410 HOH HOH A . G 5 HOH 11 411 411 HOH HOH A . G 5 HOH 12 412 412 HOH HOH A . G 5 HOH 13 413 413 HOH HOH A . G 5 HOH 14 414 414 HOH HOH A . G 5 HOH 15 415 415 HOH HOH A . G 5 HOH 16 416 416 HOH HOH A . G 5 HOH 17 417 417 HOH HOH A . G 5 HOH 18 418 418 HOH HOH A . G 5 HOH 19 419 419 HOH HOH A . G 5 HOH 20 420 420 HOH HOH A . G 5 HOH 21 421 421 HOH HOH A . G 5 HOH 22 422 422 HOH HOH A . G 5 HOH 23 423 423 HOH HOH A . G 5 HOH 24 424 424 HOH HOH A . G 5 HOH 25 425 425 HOH HOH A . G 5 HOH 26 426 426 HOH HOH A . G 5 HOH 27 427 427 HOH HOH A . G 5 HOH 28 428 428 HOH HOH A . G 5 HOH 29 429 429 HOH HOH A . G 5 HOH 30 430 430 HOH HOH A . G 5 HOH 31 431 431 HOH HOH A . H 5 HOH 1 301 301 HOH HOH B . H 5 HOH 2 302 302 HOH HOH B . H 5 HOH 3 303 303 HOH HOH B . H 5 HOH 4 304 304 HOH HOH B . H 5 HOH 5 305 305 HOH HOH B . H 5 HOH 6 306 306 HOH HOH B . H 5 HOH 7 307 307 HOH HOH B . H 5 HOH 8 308 308 HOH HOH B . H 5 HOH 9 309 309 HOH HOH B . H 5 HOH 10 310 310 HOH HOH B . H 5 HOH 11 311 311 HOH HOH B . H 5 HOH 12 312 312 HOH HOH B . H 5 HOH 13 313 313 HOH HOH B . H 5 HOH 14 314 314 HOH HOH B . H 5 HOH 15 315 315 HOH HOH B . H 5 HOH 16 316 316 HOH HOH B . H 5 HOH 17 317 317 HOH HOH B . H 5 HOH 18 318 318 HOH HOH B . H 5 HOH 19 319 319 HOH HOH B . H 5 HOH 20 320 320 HOH HOH B . H 5 HOH 21 321 321 HOH HOH B . H 5 HOH 22 322 322 HOH HOH B . H 5 HOH 23 323 323 HOH HOH B . H 5 HOH 24 324 324 HOH HOH B . H 5 HOH 25 325 325 HOH HOH B . H 5 HOH 26 326 326 HOH HOH B . H 5 HOH 27 327 327 HOH HOH B . H 5 HOH 28 328 328 HOH HOH B . H 5 HOH 29 329 329 HOH HOH B . H 5 HOH 30 330 330 HOH HOH B . H 5 HOH 31 331 331 HOH HOH B . H 5 HOH 32 332 332 HOH HOH B . H 5 HOH 33 333 333 HOH HOH B . I 5 HOH 1 101 101 HOH HOH G . I 5 HOH 2 102 102 HOH HOH G . I 5 HOH 3 103 103 HOH HOH G . I 5 HOH 4 104 104 HOH HOH G . I 5 HOH 5 105 105 HOH HOH G . I 5 HOH 6 106 106 HOH HOH G . I 5 HOH 7 107 107 HOH HOH G . I 5 HOH 8 108 108 HOH HOH G . I 5 HOH 9 109 109 HOH HOH G . I 5 HOH 10 110 110 HOH HOH G . I 5 HOH 11 111 111 HOH HOH G . I 5 HOH 12 112 112 HOH HOH G . I 5 HOH 13 113 113 HOH HOH G . I 5 HOH 14 114 114 HOH HOH G . I 5 HOH 15 115 115 HOH HOH G . I 5 HOH 16 116 116 HOH HOH G . I 5 HOH 17 117 117 HOH HOH G . I 5 HOH 18 118 118 HOH HOH G . I 5 HOH 19 119 119 HOH HOH G . I 5 HOH 20 120 120 HOH HOH G . I 5 HOH 21 121 121 HOH HOH G . J 5 HOH 1 201 201 HOH HOH H . J 5 HOH 2 202 202 HOH HOH H . J 5 HOH 3 203 203 HOH HOH H . J 5 HOH 4 204 204 HOH HOH H . J 5 HOH 5 205 205 HOH HOH H . J 5 HOH 6 206 206 HOH HOH H . J 5 HOH 7 207 207 HOH HOH H . J 5 HOH 8 208 208 HOH HOH H . J 5 HOH 9 209 209 HOH HOH H . J 5 HOH 10 210 210 HOH HOH H . J 5 HOH 11 211 211 HOH HOH H . J 5 HOH 12 212 212 HOH HOH H . J 5 HOH 13 213 213 HOH HOH H . J 5 HOH 14 214 214 HOH HOH H . J 5 HOH 15 215 215 HOH HOH H . J 5 HOH 16 216 216 HOH HOH H . J 5 HOH 17 217 217 HOH HOH H . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5280 ? 1 MORE -43 ? 1 'SSA (A^2)' 11750 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-06 2 'Structure model' 1 1 2015-06-03 3 'Structure model' 1 2 2015-08-26 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2019-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Experimental preparation' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 4 'Structure model' pdbx_struct_oper_list 3 4 'Structure model' software 4 5 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 5 'Structure model' '_pdbx_audit_support.funding_organization' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 6.4251 _pdbx_refine_tls.origin_y -2.1861 _pdbx_refine_tls.origin_z 5.0884 _pdbx_refine_tls.T[1][1] 0.0952 _pdbx_refine_tls.T[2][2] 0.0739 _pdbx_refine_tls.T[3][3] 0.0941 _pdbx_refine_tls.T[1][2] 0.0095 _pdbx_refine_tls.T[1][3] -0.0341 _pdbx_refine_tls.T[2][3] 0.0145 _pdbx_refine_tls.L[1][1] 0.7717 _pdbx_refine_tls.L[2][2] 0.4875 _pdbx_refine_tls.L[3][3] 1.3579 _pdbx_refine_tls.L[1][2] 0.4794 _pdbx_refine_tls.L[1][3] -0.8635 _pdbx_refine_tls.L[2][3] 1.2450 _pdbx_refine_tls.S[1][1] -0.0631 _pdbx_refine_tls.S[1][2] -0.0221 _pdbx_refine_tls.S[1][3] 0.1273 _pdbx_refine_tls.S[2][1] 0.0370 _pdbx_refine_tls.S[2][2] 0.0323 _pdbx_refine_tls.S[2][3] 0.1250 _pdbx_refine_tls.S[3][1] -0.0416 _pdbx_refine_tls.S[3][2] 0.1463 _pdbx_refine_tls.S[3][3] -0.0149 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ALL # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLN 201 ? ? O A HOH 413 ? ? 1.91 2 1 O G HOH 117 ? ? O H HOH 213 ? ? 1.99 3 1 OP1 G DA -99 ? ? O G HOH 101 ? ? 2.00 4 1 OP2 H DA -90 ? ? O H HOH 209 ? ? 2.07 5 1 O A LYS 186 ? ? O A HOH 421 ? ? 2.08 6 1 OD2 B ASP 190 ? ? O B HOH 301 ? ? 2.11 7 1 O B HOH 326 ? ? O G HOH 120 ? ? 2.12 8 1 O B HOH 315 ? ? O B HOH 321 ? ? 2.15 9 1 OP1 G DA -95 ? ? O G HOH 108 ? ? 2.17 10 1 OP1 H DT -88 ? ? O H HOH 207 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" G DA -96 ? ? "C1'" G DA -96 ? ? N9 G DA -96 ? ? 110.11 108.30 1.81 0.30 N 2 1 "O4'" G DC -97 ? ? "C4'" G DC -97 ? ? "C3'" G DC -97 ? ? 101.29 104.50 -3.21 0.40 N 3 1 "O4'" G DC -97 ? ? "C1'" G DC -97 ? ? N1 G DC -97 ? ? 110.26 108.30 1.96 0.30 N # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 H _pdbx_validate_polymer_linkage.auth_comp_id_1 DG _pdbx_validate_polymer_linkage.auth_seq_id_1 -97 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 H _pdbx_validate_polymer_linkage.auth_comp_id_2 DT _pdbx_validate_polymer_linkage.auth_seq_id_2 -96 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 3.21 # _cell_measurement.reflns_used 197972 _cell_measurement.entry_id 4WU4 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4WU4 'double helix' 4WU4 'a-form double helix' 4WU4 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 1 1_555 D DC 17 1_555 -0.072 -0.487 -0.020 -7.705 -5.925 -7.854 1 G_DG-86:DC-86_H G -86 ? H -86 ? 19 1 1 C DG 2 1_555 D DC 16 1_555 0.736 -0.208 -0.098 -2.053 -15.947 4.055 2 G_DG-87:DC-87_H G -87 ? H -87 ? 19 1 1 C DA 3 1_555 D DT 15 1_555 0.740 -0.159 -0.179 0.302 -12.669 2.870 3 G_DA-88:DT-88_H G -88 ? H -88 ? 20 1 1 C DC 4 1_555 D DG 14 1_555 0.429 -0.380 0.288 -5.920 -10.328 3.271 4 G_DC-89:DG-89_H G -89 ? H -89 ? 19 1 1 C DT 5 1_555 D DA 13 1_555 -0.281 -0.070 0.195 -2.253 -18.969 4.520 5 G_DT-90:DA-90_H G -90 ? H -90 ? 20 1 1 C DT 6 1_555 D DA 12 1_555 -0.144 0.082 0.377 -0.576 -15.301 3.432 6 G_DT-91:DA-91_H G -91 ? H -91 ? 20 1 1 C DA 7 1_555 D DT 11 1_555 -0.044 0.072 0.183 0.784 -13.900 -1.572 7 G_DA-92:DT-92_H G -92 ? H -92 ? 20 1 1 C DA 8 1_555 D DT 10 1_555 0.122 -0.216 0.087 0.565 -21.494 -3.701 8 G_DA-93:DT-93_H G -93 ? H -93 ? 20 1 1 C DG 9 1_555 D DC 9 1_555 -0.220 -0.196 0.005 3.848 -9.358 3.117 9 G_DG-94:DC-94_H G -94 ? H -94 ? 19 1 1 C DA 10 1_555 D DT 8 1_555 0.614 -0.052 0.171 4.570 -14.576 4.234 10 G_DA-95:DT-95_H G -95 ? H -95 ? 20 1 1 C DA 11 1_555 D DT 7 1_555 0.123 -0.519 0.114 11.801 -5.506 -3.641 11 G_DA-96:DT-96_H G -96 ? H -96 ? 20 1 1 C DC 12 1_555 D DG 6 1_555 -0.523 -0.026 -0.440 12.156 1.627 -23.814 12 G_DC-97:DG-97_H G -97 ? H -97 ? ? 1 1 C DG 13 1_555 D DC 5 1_555 -0.558 -0.168 -0.160 -10.654 -11.397 -6.171 13 G_DG-98:DC-98_H G -98 ? H -98 ? 19 1 1 C DA 14 1_555 D DT 4 1_555 -0.104 -0.306 0.112 -6.332 -15.149 10.032 14 G_DA-99:DT-99_H G -99 ? H -99 ? 20 1 1 C DT 15 1_555 D DA 3 1_555 -0.977 -0.254 -0.333 -4.619 11.299 3.161 15 G_DT-100:DA-100_H G -100 ? H -100 ? 20 1 1 C DT 16 1_555 D DA 2 1_555 -0.374 -0.349 -0.213 6.130 1.372 4.797 16 G_DT-101:DA-101_H G -101 ? H -101 ? 20 1 1 C DT 17 1_555 D DA 1 1_555 -0.700 -0.126 -0.213 14.608 -7.350 -1.687 17 G_DT-102:DA-102_H G -102 ? H -102 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 1 1_555 D DC 17 1_555 C DG 2 1_555 D DC 16 1_555 0.506 -0.453 3.395 1.123 1.455 37.056 -0.914 -0.639 3.389 2.288 -1.766 37.100 1 GG_DG-86DG-87:DC-87DC-86_HH G -86 ? H -86 ? G -87 ? H -87 ? 1 C DG 2 1_555 D DC 16 1_555 C DA 3 1_555 D DT 15 1_555 -0.448 -0.275 3.272 -0.330 3.989 34.021 -1.092 0.709 3.224 6.789 0.562 34.248 2 GG_DG-87DA-88:DT-88DC-87_HH G -87 ? H -87 ? G -88 ? H -88 ? 1 C DA 3 1_555 D DT 15 1_555 C DC 4 1_555 D DG 14 1_555 0.179 -1.135 3.478 -4.556 -0.827 30.186 -1.980 -1.303 3.443 -1.577 8.684 30.531 3 GG_DA-88DC-89:DG-89DT-88_HH G -88 ? H -88 ? G -89 ? H -89 ? 1 C DC 4 1_555 D DG 14 1_555 C DT 5 1_555 D DA 13 1_555 -0.599 -0.256 3.243 3.502 6.678 30.403 -1.704 1.754 3.033 12.494 -6.552 31.303 4 GG_DC-89DT-90:DA-90DG-89_HH G -89 ? H -89 ? G -90 ? H -90 ? 1 C DT 5 1_555 D DA 13 1_555 C DT 6 1_555 D DA 12 1_555 0.001 -0.318 3.260 -2.246 -2.035 31.940 -0.211 -0.406 3.266 -3.688 4.070 32.080 5 GG_DT-90DT-91:DA-91DA-90_HH G -90 ? H -90 ? G -91 ? H -91 ? 1 C DT 6 1_555 D DA 12 1_555 C DA 7 1_555 D DT 11 1_555 0.112 0.783 3.333 2.205 -5.178 41.563 1.637 0.075 3.218 -7.256 -3.091 41.925 6 GG_DT-91DA-92:DT-92DA-91_HH G -91 ? H -91 ? G -92 ? H -92 ? 1 C DA 7 1_555 D DT 11 1_555 C DA 8 1_555 D DT 10 1_555 -0.451 0.123 3.266 -1.873 -1.115 38.551 0.324 0.451 3.279 -1.687 2.834 38.611 7 GG_DA-92DA-93:DT-93DT-92_HH G -92 ? H -92 ? G -93 ? H -93 ? 1 C DA 8 1_555 D DT 10 1_555 C DG 9 1_555 D DC 9 1_555 0.840 0.000 3.235 0.809 2.931 31.352 -0.542 -1.398 3.241 5.408 -1.492 31.495 8 GG_DA-93DG-94:DC-94DT-93_HH G -93 ? H -93 ? G -94 ? H -94 ? 1 C DG 9 1_555 D DC 9 1_555 C DA 10 1_555 D DT 8 1_555 -0.231 -0.312 3.217 -1.331 2.929 38.806 -0.816 0.188 3.192 4.399 2.000 38.934 9 GG_DG-94DA-95:DT-95DC-94_HH G -94 ? H -94 ? G -95 ? H -95 ? 1 C DA 10 1_555 D DT 8 1_555 C DA 11 1_555 D DT 7 1_555 -0.338 -0.771 2.996 -1.910 3.170 28.887 -2.163 0.293 2.912 6.322 3.808 29.118 10 GG_DA-95DA-96:DT-96DT-95_HH G -95 ? H -95 ? G -96 ? H -96 ? 1 C DA 11 1_555 D DT 7 1_555 C DC 12 1_555 D DG 6 1_555 -0.754 -1.057 3.397 0.333 4.355 21.745 -4.408 2.087 3.116 11.396 -0.870 22.174 11 GG_DA-96DC-97:DG-97DT-96_HH G -96 ? H -96 ? G -97 ? H -97 ? 1 C DC 12 1_555 D DG 6 1_555 C DG 13 1_555 D DC 5 1_555 2.740 -2.424 4.011 1.275 5.471 24.592 -7.421 -5.841 3.531 12.636 -2.945 25.216 12 GG_DC-97DG-98:DC-98DG-97_HH G -97 ? H -97 ? G -98 ? H -98 ? 1 C DG 13 1_555 D DC 5 1_555 C DA 14 1_555 D DT 4 1_555 1.364 -1.597 3.222 0.783 8.950 31.743 -4.225 -2.280 2.716 15.967 -1.396 32.959 13 GG_DG-98DA-99:DT-99DC-98_HH G -98 ? H -98 ? G -99 ? H -99 ? 1 C DA 14 1_555 D DT 4 1_555 C DT 15 1_555 D DA 3 1_555 -0.501 -1.082 3.443 5.025 -1.442 27.856 -1.860 2.241 3.353 -2.962 -10.323 28.333 14 GG_DA-99DT-100:DA-100DT-99_HH G -99 ? H -99 ? G -100 ? H -100 ? 1 C DT 15 1_555 D DA 3 1_555 C DT 16 1_555 D DA 2 1_555 0.866 -1.001 3.180 -2.546 -0.507 33.712 -1.642 -1.885 3.122 -0.873 4.382 33.809 15 GG_DT-100DT-101:DA-101DA-100_HH G -100 ? H -100 ? G -101 ? H -101 ? 1 C DT 16 1_555 D DA 2 1_555 C DT 17 1_555 D DA 1 1_555 -0.526 -1.564 3.231 -2.978 7.853 27.856 -4.723 0.439 2.737 15.862 6.014 29.071 16 GG_DT-101DT-102:DA-102DA-101_HH G -101 ? H -101 ? G -102 ? H -102 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01AI080714 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 water HOH #