HEADER HYDROLASE 03-NOV-14 4WUR TITLE THE CRYSTAL STRUCTURE OF THE MERS-COV PAPAIN-LIKE PROTEASE (C111S) TITLE 2 WITH HUMAN UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1482-1801; COMPND 5 SYNONYM: PP1AB,ORF1AB POLYPROTEIN; COMPND 6 EC: 3.4.19.12,3.4.22.69,3.4.22.-,2.7.7.48,3.6.4.12,3.6.4.13,2.1.1.-, COMPND 7 3.1.13.-,3.1.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: POLYUBIQUITIN-B; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 1-76; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CORONAVIRUS EMC; SOURCE 3 ORGANISM_COMMON: HCOV-EMC; SOURCE 4 ORGANISM_TAXID: 1263720; SOURCE 5 STRAIN: ISOLATE UNITED KINGDOM/H123990006/2012; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: TUNER PLACI; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBB; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MERS-COV, PAPAIN-LIKE PROTEASE, UBIQUITIN, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LEI,R.HILGENFELD REVDAT 6 10-JAN-24 4WUR 1 COMPND SOURCE SHEET REVDAT 5 28-SEP-16 4WUR 1 REVDAT 4 31-AUG-16 4WUR 1 JRNL REVDAT 3 04-MAR-15 4WUR 1 SHEET REVDAT 2 24-DEC-14 4WUR 1 REVDAT 1 26-NOV-14 4WUR 0 JRNL AUTH J.LEI,R.HILGENFELD JRNL TITL STRUCTURAL AND MUTATIONAL ANALYSIS OF THE INTERACTION JRNL TITL 2 BETWEEN THE MIDDLE-EAST RESPIRATORY SYNDROME CORONAVIRUS JRNL TITL 3 (MERS-COV) PAPAIN-LIKE PROTEASE AND HUMAN UBIQUITIN. JRNL REF VIROL SIN V. 31 288 2016 JRNL REFN ISSN 1995-820X JRNL PMID 27245450 JRNL DOI 10.1007/S12250-016-3742-4 REMARK 2 REMARK 2 RESOLUTION. 3.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 10868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8819 - 5.0137 0.97 2574 147 0.1830 0.2387 REMARK 3 2 5.0137 - 3.9807 1.00 2621 125 0.1926 0.2165 REMARK 3 3 3.9807 - 3.4779 1.00 2586 127 0.2333 0.2879 REMARK 3 4 3.4779 - 3.1600 1.00 2557 131 0.2962 0.3324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2881 REMARK 3 ANGLE : 1.793 3916 REMARK 3 CHIRALITY : 0.076 446 REMARK 3 PLANARITY : 0.009 515 REMARK 3 DIHEDRAL : 13.852 973 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 121.3558 107.2260 -2.4838 REMARK 3 T TENSOR REMARK 3 T11: 0.9983 T22: 0.6929 REMARK 3 T33: 0.6357 T12: -0.2064 REMARK 3 T13: 0.1392 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 1.9148 L22: 4.1779 REMARK 3 L33: 3.9160 L12: 0.8266 REMARK 3 L13: 0.6343 L23: 0.9852 REMARK 3 S TENSOR REMARK 3 S11: 0.3788 S12: -0.1778 S13: -0.2147 REMARK 3 S21: 0.4945 S22: -0.3692 S23: 0.0241 REMARK 3 S31: 0.4560 S32: -1.1112 S33: 0.0080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6-5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10955 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.160 REMARK 200 RESOLUTION RANGE LOW (A) : 45.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P16, 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% W/V PEG 4000, 15% V/V 2-PROPANOL, REMARK 280 0.1M TRI-SODIUM CITRATE PH 4.8 AND 10% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.79550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.79550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.79550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE PROTEIN SEQUENCE FOR CHAIN A MAPS TO GENBANK AFV09327.1 AND REMARK 400 AGH58715.1 WHICH HAVE GLY AT POSITION 92 AND LEU AT POSITION 236. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 GLN A 1 REMARK 465 LEU A 2 REMARK 465 ASP A 320 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CB CG CD CE NZ REMARK 470 LYS A 48 CB CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 100 NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 141 CE NZ REMARK 470 LYS A 176 NZ REMARK 470 GLU A 178 OE2 REMARK 470 ARG A 184 NH1 NH2 REMARK 470 LYS A 197 CD CE NZ REMARK 470 GLN A 202 CB CG CD OE1 NE2 REMARK 470 LYS A 205 CD CE NZ REMARK 470 ARG A 221 CB CG CD NE CZ NH1 NH2 REMARK 470 MET A 222 CB CG SD CE REMARK 470 TYR A 224 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 224 OH REMARK 470 VAL A 225 CB CG1 CG2 REMARK 470 GLN A 227 OE1 NE2 REMARK 470 ARG A 232 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG A 234 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 GLU A 252 CD OE1 OE2 REMARK 470 LYS A 253 CD CE NZ REMARK 470 VAL A 255 CB CG1 CG2 REMARK 470 SER A 258 CB OG REMARK 470 THR A 259 OG1 CG2 REMARK 470 LYS A 285 CB CG CD CE NZ REMARK 470 LEU A 288 CG CD1 CD2 REMARK 470 ILE A 289 CG1 CG2 CD1 REMARK 470 LYS A 291 CB CG CD CE NZ REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 TRP A 303 CZ2 CH2 REMARK 470 LYS A 304 CB CG CD CE NZ REMARK 470 LYS A 306 CD CE NZ REMARK 470 LYS A 316 CE NZ REMARK 470 ILE B 3 CG1 CG2 CD1 REMARK 470 PHE B 4 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 6 CB CG CD CE NZ REMARK 470 LEU B 8 CB CG CD1 CD2 REMARK 470 LYS B 11 CB CG CD CE NZ REMARK 470 ILE B 13 CB CG1 CG2 CD1 REMARK 470 THR B 14 CB OG1 CG2 REMARK 470 VAL B 17 CB CG1 CG2 REMARK 470 SER B 20 CB OG REMARK 470 GLU B 24 CD OE1 OE2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 29 CB CG CD CE NZ REMARK 470 ILE B 30 CB CG1 CG2 CD1 REMARK 470 GLN B 31 CB CG CD OE1 NE2 REMARK 470 ASP B 32 CB CG OD1 OD2 REMARK 470 LYS B 33 CB CG CD CE NZ REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 LYS B 48 CD CE NZ REMARK 470 ARG B 54 CB CG CD NE CZ NH1 NH2 REMARK 470 SER B 57 CB OG REMARK 470 ASN B 60 CB CG OD1 ND2 REMARK 470 GLN B 62 CG CD OE1 NE2 REMARK 470 LYS B 63 CB CG CD CE NZ REMARK 470 GLU B 64 CB CG CD OE1 OE2 REMARK 470 THR B 66 CB OG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 105 CG REMARK 480 GLU A 178 CG REMARK 480 ARG A 184 CD REMARK 480 GLU A 189 CB REMARK 480 GLU A 231 CB REMARK 480 GLN A 235 CG REMARK 480 GLN B 41 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 17 OD2 ASP A 99 4874 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 20 N - CA - C ANGL. DEV. = -21.1 DEGREES REMARK 500 PRO B 37 C - N - CA ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 -56.06 -132.77 REMARK 500 ASP A 42 38.05 -97.27 REMARK 500 ASP A 99 55.29 38.65 REMARK 500 LYS A 100 -11.66 69.76 REMARK 500 SER A 107 135.02 -172.01 REMARK 500 HIS A 239 112.56 -167.21 REMARK 500 PRO A 250 107.23 -55.97 REMARK 500 ALA A 260 76.11 58.47 REMARK 500 ALA A 275 -162.96 -122.42 REMARK 500 THR A 308 -75.88 -116.19 REMARK 500 THR B 9 65.17 32.30 REMARK 500 SER B 20 -30.33 -141.38 REMARK 500 GLU B 64 4.06 83.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 191 SG REMARK 620 2 CYS A 194 SG 111.6 REMARK 620 3 CYS A 226 SG 141.0 97.1 REMARK 620 4 CYS A 228 SG 94.4 91.9 111.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P16 RELATED DB: PDB DBREF 4WUR A 1 320 UNP K9N7C7 R1AB_CVEMC 1482 1801 DBREF 4WUR B 1 76 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 4WUR GLY A -5 UNP K9N7C7 EXPRESSION TAG SEQADV 4WUR SER A -4 UNP K9N7C7 EXPRESSION TAG SEQADV 4WUR HIS A -3 UNP K9N7C7 EXPRESSION TAG SEQADV 4WUR MET A -2 UNP K9N7C7 EXPRESSION TAG SEQADV 4WUR ALA A -1 UNP K9N7C7 EXPRESSION TAG SEQADV 4WUR SER A 0 UNP K9N7C7 EXPRESSION TAG SEQADV 4WUR GLY A 92 UNP K9N7C7 LYS 1573 CONFLICT SEQADV 4WUR SER A 111 UNP K9N7C7 CYS 1592 ENGINEERED MUTATION SEQADV 4WUR LEU A 236 UNP K9N7C7 ILE 1717 CONFLICT SEQRES 1 A 326 GLY SER HIS MET ALA SER GLN LEU THR ILE GLU VAL LEU SEQRES 2 A 326 VAL THR VAL ASP GLY VAL ASN PHE ARG THR VAL VAL LEU SEQRES 3 A 326 ASN ASN LYS ASN THR TYR ARG SER GLN LEU GLY CYS VAL SEQRES 4 A 326 PHE PHE ASN GLY ALA ASP ILE SER ASP THR ILE PRO ASP SEQRES 5 A 326 GLU LYS GLN ASN GLY HIS SER LEU TYR LEU ALA ASP ASN SEQRES 6 A 326 LEU THR ALA ASP GLU THR LYS ALA LEU LYS GLU LEU TYR SEQRES 7 A 326 GLY PRO VAL ASP PRO THR PHE LEU HIS ARG PHE TYR SER SEQRES 8 A 326 LEU LYS ALA ALA VAL HIS GLY TRP LYS MET VAL VAL CYS SEQRES 9 A 326 ASP LYS VAL ARG SER LEU LYS LEU SER ASP ASN ASN SER SEQRES 10 A 326 TYR LEU ASN ALA VAL ILE MET THR LEU ASP LEU LEU LYS SEQRES 11 A 326 ASP ILE LYS PHE VAL ILE PRO ALA LEU GLN HIS ALA PHE SEQRES 12 A 326 MET LYS HIS LYS GLY GLY ASP SER THR ASP PHE ILE ALA SEQRES 13 A 326 LEU ILE MET ALA TYR GLY ASN CYS THR PHE GLY ALA PRO SEQRES 14 A 326 ASP ASP ALA SER ARG LEU LEU HIS THR VAL LEU ALA LYS SEQRES 15 A 326 ALA GLU LEU CYS CYS SER ALA ARG MET VAL TRP ARG GLU SEQRES 16 A 326 TRP CYS ASN VAL CYS GLY ILE LYS ASP VAL VAL LEU GLN SEQRES 17 A 326 GLY LEU LYS ALA CYS CYS TYR VAL GLY VAL GLN THR VAL SEQRES 18 A 326 GLU ASP LEU ARG ALA ARG MET THR TYR VAL CYS GLN CYS SEQRES 19 A 326 GLY GLY GLU ARG HIS ARG GLN LEU VAL GLU HIS THR THR SEQRES 20 A 326 PRO TRP LEU LEU LEU SER GLY THR PRO ASN GLU LYS LEU SEQRES 21 A 326 VAL THR THR SER THR ALA PRO ASP PHE VAL ALA PHE ASN SEQRES 22 A 326 VAL PHE GLN GLY ILE GLU THR ALA VAL GLY HIS TYR VAL SEQRES 23 A 326 HIS ALA ARG LEU LYS GLY GLY LEU ILE LEU LYS PHE ASP SEQRES 24 A 326 SER GLY THR VAL SER LYS THR SER ASP TRP LYS CYS LYS SEQRES 25 A 326 VAL THR ASP VAL LEU PHE PRO GLY GLN LYS TYR SER SER SEQRES 26 A 326 ASP SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET IPA A 401 12 HET IPA A 402 12 HET ZN A 403 1 HETNAM IPA ISOPROPYL ALCOHOL HETNAM ZN ZINC ION HETSYN IPA 2-PROPANOL FORMUL 3 IPA 2(C3 H8 O) FORMUL 5 ZN ZN 2+ HELIX 1 AA1 THR A 25 LEU A 30 1 6 HELIX 2 AA2 ASP A 46 ASN A 50 5 5 HELIX 3 AA3 THR A 61 GLY A 73 1 13 HELIX 4 AA4 THR A 78 VAL A 90 1 13 HELIX 5 AA5 ASN A 110 ASP A 121 1 12 HELIX 6 AA6 ILE A 130 GLY A 143 1 14 HELIX 7 AA7 SER A 145 GLY A 156 1 12 HELIX 8 AA8 ASP A 165 ALA A 175 1 11 HELIX 9 AA9 LEU A 204 ALA A 206 5 3 HELIX 10 AB1 THR A 214 ALA A 220 1 7 HELIX 11 AB2 THR B 22 ASP B 32 1 11 LINK SG CYS A 191 ZN ZN A 403 1555 1555 2.86 LINK SG CYS A 194 ZN ZN A 403 1555 1555 2.32 LINK SG CYS A 226 ZN ZN A 403 1555 1555 2.27 LINK SG CYS A 228 ZN ZN A 403 1555 1555 2.70 SITE 1 AC1 5 HIS A 91 TRP A 93 SER A 145 THR A 146 SITE 2 AC1 5 ILE A 149 SITE 1 AC2 2 TYR A 84 LYS A 87 SITE 1 AC3 4 CYS A 191 CYS A 194 CYS A 226 CYS A 228 CRYST1 138.144 138.144 57.591 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007239 0.004179 0.000000 0.00000 SCALE2 0.000000 0.008359 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017364 0.00000