HEADER HYDROLASE 05-NOV-14 4WVA TITLE CRYSTAL STRUCTURE OF GH63 MANNOSYLGLYCERATE HYDROLASE FROM THERMUS TITLE 2 THERMOPHILUS HB8 IN COMPLEX WITH TRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 GENE: TTHA0978; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS HYDROLASE, GH63, (ALPHA/ALPHA)6-BARREL EXPDTA X-RAY DIFFRACTION AUTHOR T.MIYAZAKI,M.ICHIKAWA,A.NISHIKAWA,T.TONOZUKA REVDAT 4 08-NOV-23 4WVA 1 REMARK REVDAT 3 05-FEB-20 4WVA 1 SOURCE JRNL REMARK REVDAT 2 22-APR-15 4WVA 1 JRNL REVDAT 1 11-MAR-15 4WVA 0 JRNL AUTH T.MIYAZAKI,M.ICHIKAWA,H.IINO,A.NISHIKAWA,T.TONOZUKA JRNL TITL CRYSTAL STRUCTURE AND SUBSTRATE-BINDING MODE OF GH63 JRNL TITL 2 MANNOSYLGLYCERATE HYDROLASE FROM THERMUS THERMOPHILUS HB8. JRNL REF J.STRUCT.BIOL. V. 190 21 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 25712767 JRNL DOI 10.1016/J.JSB.2015.02.006 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 91313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4825 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6485 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 358 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 674 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7180 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6638 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9809 ; 1.314 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15179 ; 3.490 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 839 ; 5.386 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 376 ;33.748 ;22.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1063 ;11.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 79 ;14.281 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 983 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8118 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1845 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Z07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 100MM TRIS-HCL, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.00500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.56100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.07833 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 46.00500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 26.56100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.07833 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 46.00500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 26.56100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.07833 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.12200 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 178.15667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 53.12200 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 178.15667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 53.12200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 178.15667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 500 LIES ON A SPECIAL POSITION. REMARK 375 CL CL B 500 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 733 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 687 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 688 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 90 REMARK 465 GLU A 91 REMARK 465 ALA A 92 REMARK 465 ARG A 93 REMARK 465 ALA A 94 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 91 REMARK 465 ALA B 92 REMARK 465 ARG B 93 REMARK 465 ALA B 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 606 O HOH B 653 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 29 36.22 -89.53 REMARK 500 VAL A 46 -51.90 -123.05 REMARK 500 ASP A 47 117.49 -164.66 REMARK 500 ASP A 47 118.43 -165.18 REMARK 500 THR A 102 -165.92 -113.64 REMARK 500 ARG A 348 76.26 -100.23 REMARK 500 TYR A 349 -110.60 67.47 REMARK 500 PRO B 29 35.69 -86.72 REMARK 500 VAL B 46 -51.57 -127.07 REMARK 500 ASP B 47 114.27 -161.17 REMARK 500 THR B 102 -165.23 -110.80 REMARK 500 TYR B 349 -105.56 67.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 826 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 857 DISTANCE = 5.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z07 RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 2.1-A RESOLUTION REMARK 900 RELATED ID: 4WVB RELATED DB: PDB REMARK 900 RELATED ID: 4WVC RELATED DB: PDB DBREF 4WVA A 1 420 UNP Q5SJN0 Q5SJN0_THET8 1 420 DBREF 4WVA B 1 420 UNP Q5SJN0 Q5SJN0_THET8 1 420 SEQRES 1 A 420 MET ALA PRO LEU ARG THR LYS ALA VAL GLU VAL LEU GLN SEQRES 2 A 420 ARG ASN SER ARG GLY ALA PHE THR VAL PRO ALA HIS GLY SEQRES 3 A 420 LEU TYR PRO TYR GLN TRP LEU TRP ASP SER ALA PHE ILE SEQRES 4 A 420 ALA LEU GLY TRP THR GLN VAL ASP TRP GLU ARG ALA TRP SEQRES 5 A 420 GLN GLU LEU LEU CYS LEU PHE ASP TYR GLY GLN GLY PRO SEQRES 6 A 420 ASP GLY MET LEU PRO HIS ILE VAL PHE HIS GLU GLN SER SEQRES 7 A 420 ARG ASP TYR PHE PRO GLY PRO ASP VAL TRP GLY ARG GLU SEQRES 8 A 420 ALA ARG ALA GLN PRO ALA THR SER GLY ILE THR GLN PRO SEQRES 9 A 420 PRO VAL VAL ALA THR VAL VAL ARG TYR LEU TYR GLU LYS SEQRES 10 A 420 ASP PRO ASP ARG ASP ARG ALA ARG GLU ARG ALA ARG TYR SEQRES 11 A 420 LEU PHE PRO LYS LEU LEU ALA PHE HIS ARG TRP LEU TYR SEQRES 12 A 420 HIS ALA ARG ASP PRO TYR ARG THR GLY LEU VAL VAL ILE SEQRES 13 A 420 VAL HIS PRO TRP GLU SER GLY MET ASP ASN SER PRO ALA SEQRES 14 A 420 TRP ASP LYS PRO LEU SER ARG VAL PRO VAL GLU ASN LEU SEQRES 15 A 420 PRO PRO TYR GLU ARG ARG ASP VAL LYS HIS VAL ASN PRO SEQRES 16 A 420 GLU GLU ARG PRO ARG LYS GLU ASP TYR ASP ARG TYR LEU SEQRES 17 A 420 SER LEU LEU TYR LEU PHE ARG ARG LEU GLU TYR ASP PRO SEQRES 18 A 420 ARG GLU ILE TYR ARG GLN SER PRO PHE LYS VAL VAL ASP SEQRES 19 A 420 VAL GLY PHE ASN ALA ILE LEU GLN ARG ALA ASN ARG ASP SEQRES 20 A 420 LEU TYR ALA LEU ALA VAL LEU LEU GLN GLU ASP PRO TYR SEQRES 21 A 420 GLU ILE GLU GLU TRP ILE VAL ARG GLY GLU VAL GLY LEU SEQRES 22 A 420 GLU ALA LEU TRP ASP ARG GLU ALA GLY PHE TYR PHE SER SEQRES 23 A 420 TRP ASP LEU VAL ALA GLY GLU PRO ILE ALA VAL LYS THR SEQRES 24 A 420 SER ALA GLY PHE LEU PRO LEU PHE ALA GLY THR PRO HIS SEQRES 25 A 420 GLN GLY ARG ALA SER LEU LEU ALA GLN GLU ALA GLU ARG SEQRES 26 A 420 TRP GLY GLU LYS ALA ARG TYR LEU LEU PRO SER VAL ASP SEQRES 27 A 420 PRO THR SER PRO PHE PHE GLU PRO GLY ARG TYR TRP ARG SEQRES 28 A 420 GLY PRO VAL TRP ILE ASN VAL ASN TRP MET VAL ALA GLU SEQRES 29 A 420 GLY PHE ARG ASP TYR GLY PHE ALA ALA LEU ALA ALA ARG SEQRES 30 A 420 LEU LYS ALA ASP ALA LEU ALA LEU MET GLU ARG GLU GLY SEQRES 31 A 420 PHE ARG GLU TYR TYR ASP PRO LEU THR GLY GLN GLY ARG SEQRES 32 A 420 GLY GLY GLU GLY PHE SER TRP SER ALA ALA LEU ALA LEU SEQRES 33 A 420 PHE TRP THR ARG SEQRES 1 B 420 MET ALA PRO LEU ARG THR LYS ALA VAL GLU VAL LEU GLN SEQRES 2 B 420 ARG ASN SER ARG GLY ALA PHE THR VAL PRO ALA HIS GLY SEQRES 3 B 420 LEU TYR PRO TYR GLN TRP LEU TRP ASP SER ALA PHE ILE SEQRES 4 B 420 ALA LEU GLY TRP THR GLN VAL ASP TRP GLU ARG ALA TRP SEQRES 5 B 420 GLN GLU LEU LEU CYS LEU PHE ASP TYR GLY GLN GLY PRO SEQRES 6 B 420 ASP GLY MET LEU PRO HIS ILE VAL PHE HIS GLU GLN SER SEQRES 7 B 420 ARG ASP TYR PHE PRO GLY PRO ASP VAL TRP GLY ARG GLU SEQRES 8 B 420 ALA ARG ALA GLN PRO ALA THR SER GLY ILE THR GLN PRO SEQRES 9 B 420 PRO VAL VAL ALA THR VAL VAL ARG TYR LEU TYR GLU LYS SEQRES 10 B 420 ASP PRO ASP ARG ASP ARG ALA ARG GLU ARG ALA ARG TYR SEQRES 11 B 420 LEU PHE PRO LYS LEU LEU ALA PHE HIS ARG TRP LEU TYR SEQRES 12 B 420 HIS ALA ARG ASP PRO TYR ARG THR GLY LEU VAL VAL ILE SEQRES 13 B 420 VAL HIS PRO TRP GLU SER GLY MET ASP ASN SER PRO ALA SEQRES 14 B 420 TRP ASP LYS PRO LEU SER ARG VAL PRO VAL GLU ASN LEU SEQRES 15 B 420 PRO PRO TYR GLU ARG ARG ASP VAL LYS HIS VAL ASN PRO SEQRES 16 B 420 GLU GLU ARG PRO ARG LYS GLU ASP TYR ASP ARG TYR LEU SEQRES 17 B 420 SER LEU LEU TYR LEU PHE ARG ARG LEU GLU TYR ASP PRO SEQRES 18 B 420 ARG GLU ILE TYR ARG GLN SER PRO PHE LYS VAL VAL ASP SEQRES 19 B 420 VAL GLY PHE ASN ALA ILE LEU GLN ARG ALA ASN ARG ASP SEQRES 20 B 420 LEU TYR ALA LEU ALA VAL LEU LEU GLN GLU ASP PRO TYR SEQRES 21 B 420 GLU ILE GLU GLU TRP ILE VAL ARG GLY GLU VAL GLY LEU SEQRES 22 B 420 GLU ALA LEU TRP ASP ARG GLU ALA GLY PHE TYR PHE SER SEQRES 23 B 420 TRP ASP LEU VAL ALA GLY GLU PRO ILE ALA VAL LYS THR SEQRES 24 B 420 SER ALA GLY PHE LEU PRO LEU PHE ALA GLY THR PRO HIS SEQRES 25 B 420 GLN GLY ARG ALA SER LEU LEU ALA GLN GLU ALA GLU ARG SEQRES 26 B 420 TRP GLY GLU LYS ALA ARG TYR LEU LEU PRO SER VAL ASP SEQRES 27 B 420 PRO THR SER PRO PHE PHE GLU PRO GLY ARG TYR TRP ARG SEQRES 28 B 420 GLY PRO VAL TRP ILE ASN VAL ASN TRP MET VAL ALA GLU SEQRES 29 B 420 GLY PHE ARG ASP TYR GLY PHE ALA ALA LEU ALA ALA ARG SEQRES 30 B 420 LEU LYS ALA ASP ALA LEU ALA LEU MET GLU ARG GLU GLY SEQRES 31 B 420 PHE ARG GLU TYR TYR ASP PRO LEU THR GLY GLN GLY ARG SEQRES 32 B 420 GLY GLY GLU GLY PHE SER TRP SER ALA ALA LEU ALA LEU SEQRES 33 B 420 PHE TRP THR ARG HET CL A 500 1 HET TRS A 501 16 HET MPD A 502 8 HET MPD A 503 8 HET MPD A 504 8 HET CL B 500 1 HET TRS B 501 16 HET MPD B 502 8 HET MPD B 503 8 HETNAM CL CHLORIDE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN TRS TRIS BUFFER FORMUL 3 CL 2(CL 1-) FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 5 MPD 5(C6 H14 O2) FORMUL 12 HOH *674(H2 O) HELIX 1 AA1 PRO A 3 SER A 16 1 14 HELIX 2 AA2 LEU A 33 THR A 44 1 12 HELIX 3 AA3 ASP A 47 GLN A 63 1 17 HELIX 4 AA4 GLY A 84 GLY A 89 1 6 HELIX 5 AA5 VAL A 106 ASP A 118 1 13 HELIX 6 AA6 ASP A 120 ASP A 147 1 28 HELIX 7 AA7 HIS A 158 GLY A 163 5 6 HELIX 8 AA8 SER A 167 ALA A 169 5 3 HELIX 9 AA9 TRP A 170 ARG A 176 1 7 HELIX 10 AB1 ARG A 188 HIS A 192 5 5 HELIX 11 AB2 ASN A 194 ARG A 198 5 5 HELIX 12 AB3 ARG A 200 LEU A 217 1 18 HELIX 13 AB4 ASP A 220 SER A 228 1 9 HELIX 14 AB5 ASP A 234 LEU A 255 1 22 HELIX 15 AB6 PRO A 259 LEU A 276 1 18 HELIX 16 AB7 THR A 299 PHE A 303 5 5 HELIX 17 AB8 LEU A 304 GLY A 309 1 6 HELIX 18 AB9 HIS A 312 GLU A 328 1 17 HELIX 19 AC1 TRP A 355 TYR A 369 1 15 HELIX 20 AC2 PHE A 371 GLY A 390 1 20 HELIX 21 AC3 PHE A 408 THR A 419 1 12 HELIX 22 AC4 LEU B 4 SER B 16 1 13 HELIX 23 AC5 LEU B 33 THR B 44 1 12 HELIX 24 AC6 ASP B 47 GLN B 63 1 17 HELIX 25 AC7 GLY B 84 GLY B 89 1 6 HELIX 26 AC8 VAL B 106 ASP B 118 1 13 HELIX 27 AC9 ASP B 120 ASP B 147 1 28 HELIX 28 AD1 HIS B 158 GLY B 163 5 6 HELIX 29 AD2 SER B 167 ALA B 169 5 3 HELIX 30 AD3 TRP B 170 ARG B 176 1 7 HELIX 31 AD4 ARG B 188 HIS B 192 5 5 HELIX 32 AD5 ASN B 194 ARG B 198 5 5 HELIX 33 AD6 ARG B 200 LEU B 217 1 18 HELIX 34 AD7 ASP B 220 SER B 228 1 9 HELIX 35 AD8 ASP B 234 GLN B 256 1 23 HELIX 36 AD9 PRO B 259 LEU B 276 1 18 HELIX 37 AE1 THR B 299 PHE B 303 5 5 HELIX 38 AE2 LEU B 304 GLY B 309 1 6 HELIX 39 AE3 HIS B 312 GLY B 327 1 16 HELIX 40 AE4 TRP B 355 TYR B 369 1 15 HELIX 41 AE5 PHE B 371 GLY B 390 1 20 HELIX 42 AE6 PHE B 408 THR B 419 1 12 SHEET 1 AA1 3 GLN A 31 TRP A 32 0 SHEET 2 AA1 3 ILE A 72 PHE A 74 -1 O VAL A 73 N GLN A 31 SHEET 3 AA1 3 ALA A 97 THR A 98 -1 O ALA A 97 N PHE A 74 SHEET 1 AA2 3 VAL A 232 VAL A 233 0 SHEET 2 AA2 3 TRP A 287 ASP A 288 -1 O TRP A 287 N VAL A 233 SHEET 3 AA2 3 GLU A 293 PRO A 294 -1 O GLU A 293 N ASP A 288 SHEET 1 AA3 2 TRP A 277 ASP A 278 0 SHEET 2 AA3 2 PHE A 283 TYR A 284 -1 O PHE A 283 N ASP A 278 SHEET 1 AA4 2 ARG A 392 TYR A 395 0 SHEET 2 AA4 2 GLY A 402 GLU A 406 -1 O ARG A 403 N TYR A 394 SHEET 1 AA5 2 GLN B 31 TRP B 32 0 SHEET 2 AA5 2 ILE B 72 VAL B 73 -1 O VAL B 73 N GLN B 31 SHEET 1 AA6 3 VAL B 232 VAL B 233 0 SHEET 2 AA6 3 TRP B 287 ASP B 288 -1 O TRP B 287 N VAL B 233 SHEET 3 AA6 3 GLU B 293 PRO B 294 -1 O GLU B 293 N ASP B 288 SHEET 1 AA7 2 TRP B 277 ASP B 278 0 SHEET 2 AA7 2 PHE B 283 TYR B 284 -1 O PHE B 283 N ASP B 278 SHEET 1 AA8 2 ARG B 392 TYR B 395 0 SHEET 2 AA8 2 GLY B 402 GLU B 406 -1 O ARG B 403 N TYR B 394 CISPEP 1 PHE A 82 PRO A 83 0 -0.84 CISPEP 2 LEU A 333 LEU A 334 0 -3.12 CISPEP 3 PHE B 82 PRO B 83 0 1.29 CISPEP 4 LEU B 333 LEU B 334 0 -2.97 SITE 1 AC1 3 HIS A 312 GLN A 313 HOH A 735 SITE 1 AC2 14 TYR A 28 TRP A 32 TRP A 34 ASP A 35 SITE 2 AC2 14 GLN A 103 GLY A 163 ASP A 165 TYR A 349 SITE 3 AC2 14 TRP A 350 GLU A 393 PHE A 408 TRP A 410 SITE 4 AC2 14 HOH A 679 HOH A 700 SITE 1 AC3 7 GLU A 10 VAL A 190 LYS A 191 HIS A 192 SITE 2 AC3 7 PRO A 195 HOH A 659 HOH A 819 SITE 1 AC4 7 GLY A 64 PRO A 133 LYS A 134 HOH A 814 SITE 2 AC4 7 HOH A 823 HOH A 919 PRO B 65 SITE 1 AC5 6 ARG A 243 ARG A 279 TRP A 360 GLU A 364 SITE 2 AC5 6 HOH A 619 HOH A 767 SITE 1 AC6 3 HIS B 312 GLN B 313 HOH B 687 SITE 1 AC7 13 TYR B 28 TRP B 32 TRP B 34 ASP B 35 SITE 2 AC7 13 GLN B 103 GLY B 163 ASP B 165 TYR B 349 SITE 3 AC7 13 TRP B 350 GLU B 393 PHE B 408 TRP B 410 SITE 4 AC7 13 HOH B 745 SITE 1 AC8 5 PRO A 65 GLY B 64 GLY B 67 PRO B 133 SITE 2 AC8 5 HOH B 860 SITE 1 AC9 5 THR B 109 ARG B 243 TRP B 360 GLU B 364 SITE 2 AC9 5 HOH B 773 CRYST1 92.010 92.010 267.235 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010868 0.006275 0.000000 0.00000 SCALE2 0.000000 0.012550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003742 0.00000