HEADER HYDROLASE 05-NOV-14 4WVB TITLE CRYSTAL STRUCTURE OF GH63 MANNOSYLGLYCERATE HYDROLASE FROM THERMUS TITLE 2 THERMOPHILUS HB8 IN COMPLEX WITH GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 GENE: TTHA0978; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS HYDROLASE, GH63, (ALPHA/ALPHA)6-BARREL EXPDTA X-RAY DIFFRACTION AUTHOR T.MIYAZAKI,M.ICHIKAWA,A.NISHIKAWA,T.TONOZUKA REVDAT 5 08-NOV-23 4WVB 1 HETSYN REVDAT 4 29-JUL-20 4WVB 1 COMPND REMARK HETNAM SITE REVDAT 3 05-FEB-20 4WVB 1 SOURCE JRNL REMARK REVDAT 2 22-APR-15 4WVB 1 JRNL REVDAT 1 11-MAR-15 4WVB 0 JRNL AUTH T.MIYAZAKI,M.ICHIKAWA,H.IINO,A.NISHIKAWA,T.TONOZUKA JRNL TITL CRYSTAL STRUCTURE AND SUBSTRATE-BINDING MODE OF GH63 JRNL TITL 2 MANNOSYLGLYCERATE HYDROLASE FROM THERMUS THERMOPHILUS HB8. JRNL REF J.STRUCT.BIOL. V. 190 21 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 25712767 JRNL DOI 10.1016/J.JSB.2015.02.006 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 76054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5668 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 295 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6691 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 542 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6989 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6437 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9536 ; 1.422 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14717 ; 3.502 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 814 ; 5.677 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 366 ;33.533 ;21.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1039 ;12.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 78 ;16.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 952 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7917 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1811 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3247 ; 1.500 ; 2.267 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3246 ; 1.499 ; 2.267 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4052 ; 2.267 ; 3.387 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4053 ; 2.267 ; 3.387 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3742 ; 2.196 ; 2.624 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3743 ; 2.196 ; 2.624 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5481 ; 3.539 ; 3.826 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8772 ; 5.330 ;19.849 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8502 ; 5.199 ;19.496 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80188 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 51.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.20800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Z07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 100 MM SODIUM CITRATE BUFFER, REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.72250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.97525 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.71367 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 46.72250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 26.97525 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.71367 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 46.72250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 26.97525 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.71367 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.95050 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 169.42733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 53.95050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 169.42733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 53.95050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 169.42733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 93.44500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 46.72250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 80.92574 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 93.44500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 46.72250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 80.92574 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 501 LIES ON A SPECIAL POSITION. REMARK 375 CL CL B 500 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 676 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 703 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 86 REMARK 465 VAL A 87 REMARK 465 GLU A 180 REMARK 465 ASN A 181 REMARK 465 LEU A 182 REMARK 465 PRO A 183 REMARK 465 PRO A 184 REMARK 465 TYR A 185 REMARK 465 GLU A 186 REMARK 465 ARG A 187 REMARK 465 ARG A 188 REMARK 465 ASP A 189 REMARK 465 VAL A 190 REMARK 465 LYS A 191 REMARK 465 HIS A 192 REMARK 465 VAL A 193 REMARK 465 ASN A 194 REMARK 465 PRO A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 ARG A 198 REMARK 465 PRO A 199 REMARK 465 ARG A 200 REMARK 465 LYS A 201 REMARK 465 MET B 1 REMARK 465 ASP B 86 REMARK 465 VAL B 87 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 47 108.25 -165.68 REMARK 500 THR A 102 -168.90 -114.02 REMARK 500 ASP A 147 59.50 -140.43 REMARK 500 ARG A 348 70.13 -108.16 REMARK 500 TYR A 349 -112.74 65.31 REMARK 500 VAL B 46 -52.16 -125.66 REMARK 500 ASP B 47 104.45 -163.40 REMARK 500 TYR B 349 -113.99 49.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 765 DISTANCE = 5.94 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z07 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGAND AT 2.1-A RESOLUTION REMARK 900 RELATED ID: 4WVA RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH TRIS REMARK 900 RELATED ID: 4WVC RELATED DB: PDB DBREF 4WVB A 1 420 UNP Q5SJN0 Q5SJN0_THET8 1 420 DBREF 4WVB B 1 420 UNP Q5SJN0 Q5SJN0_THET8 1 420 SEQRES 1 A 420 MET ALA PRO LEU ARG THR LYS ALA VAL GLU VAL LEU GLN SEQRES 2 A 420 ARG ASN SER ARG GLY ALA PHE THR VAL PRO ALA HIS GLY SEQRES 3 A 420 LEU TYR PRO TYR GLN TRP LEU TRP ASP SER ALA PHE ILE SEQRES 4 A 420 ALA LEU GLY TRP THR GLN VAL ASP TRP GLU ARG ALA TRP SEQRES 5 A 420 GLN GLU LEU LEU CYS LEU PHE ASP TYR GLY GLN GLY PRO SEQRES 6 A 420 ASP GLY MET LEU PRO HIS ILE VAL PHE HIS GLU GLN SER SEQRES 7 A 420 ARG ASP TYR PHE PRO GLY PRO ASP VAL TRP GLY ARG GLU SEQRES 8 A 420 ALA ARG ALA GLN PRO ALA THR SER GLY ILE THR GLN PRO SEQRES 9 A 420 PRO VAL VAL ALA THR VAL VAL ARG TYR LEU TYR GLU LYS SEQRES 10 A 420 ASP PRO ASP ARG ASP ARG ALA ARG GLU ARG ALA ARG TYR SEQRES 11 A 420 LEU PHE PRO LYS LEU LEU ALA PHE HIS ARG TRP LEU TYR SEQRES 12 A 420 HIS ALA ARG ASP PRO TYR ARG THR GLY LEU VAL VAL ILE SEQRES 13 A 420 VAL HIS PRO TRP GLU SER GLY MET ASP ASN SER PRO ALA SEQRES 14 A 420 TRP ASP LYS PRO LEU SER ARG VAL PRO VAL GLU ASN LEU SEQRES 15 A 420 PRO PRO TYR GLU ARG ARG ASP VAL LYS HIS VAL ASN PRO SEQRES 16 A 420 GLU GLU ARG PRO ARG LYS GLU ASP TYR ASP ARG TYR LEU SEQRES 17 A 420 SER LEU LEU TYR LEU PHE ARG ARG LEU GLU TYR ASP PRO SEQRES 18 A 420 ARG GLU ILE TYR ARG GLN SER PRO PHE LYS VAL VAL ASP SEQRES 19 A 420 VAL GLY PHE ASN ALA ILE LEU GLN ARG ALA ASN ARG ASP SEQRES 20 A 420 LEU TYR ALA LEU ALA VAL LEU LEU GLN GLU ASP PRO TYR SEQRES 21 A 420 GLU ILE GLU GLU TRP ILE VAL ARG GLY GLU VAL GLY LEU SEQRES 22 A 420 GLU ALA LEU TRP ASP ARG GLU ALA GLY PHE TYR PHE SER SEQRES 23 A 420 TRP ASP LEU VAL ALA GLY GLU PRO ILE ALA VAL LYS THR SEQRES 24 A 420 SER ALA GLY PHE LEU PRO LEU PHE ALA GLY THR PRO HIS SEQRES 25 A 420 GLN GLY ARG ALA SER LEU LEU ALA GLN GLU ALA GLU ARG SEQRES 26 A 420 TRP GLY GLU LYS ALA ARG TYR LEU LEU PRO SER VAL ASP SEQRES 27 A 420 PRO THR SER PRO PHE PHE GLU PRO GLY ARG TYR TRP ARG SEQRES 28 A 420 GLY PRO VAL TRP ILE ASN VAL ASN TRP MET VAL ALA GLU SEQRES 29 A 420 GLY PHE ARG ASP TYR GLY PHE ALA ALA LEU ALA ALA ARG SEQRES 30 A 420 LEU LYS ALA ASP ALA LEU ALA LEU MET GLU ARG GLU GLY SEQRES 31 A 420 PHE ARG GLU TYR TYR ASP PRO LEU THR GLY GLN GLY ARG SEQRES 32 A 420 GLY GLY GLU GLY PHE SER TRP SER ALA ALA LEU ALA LEU SEQRES 33 A 420 PHE TRP THR ARG SEQRES 1 B 420 MET ALA PRO LEU ARG THR LYS ALA VAL GLU VAL LEU GLN SEQRES 2 B 420 ARG ASN SER ARG GLY ALA PHE THR VAL PRO ALA HIS GLY SEQRES 3 B 420 LEU TYR PRO TYR GLN TRP LEU TRP ASP SER ALA PHE ILE SEQRES 4 B 420 ALA LEU GLY TRP THR GLN VAL ASP TRP GLU ARG ALA TRP SEQRES 5 B 420 GLN GLU LEU LEU CYS LEU PHE ASP TYR GLY GLN GLY PRO SEQRES 6 B 420 ASP GLY MET LEU PRO HIS ILE VAL PHE HIS GLU GLN SER SEQRES 7 B 420 ARG ASP TYR PHE PRO GLY PRO ASP VAL TRP GLY ARG GLU SEQRES 8 B 420 ALA ARG ALA GLN PRO ALA THR SER GLY ILE THR GLN PRO SEQRES 9 B 420 PRO VAL VAL ALA THR VAL VAL ARG TYR LEU TYR GLU LYS SEQRES 10 B 420 ASP PRO ASP ARG ASP ARG ALA ARG GLU ARG ALA ARG TYR SEQRES 11 B 420 LEU PHE PRO LYS LEU LEU ALA PHE HIS ARG TRP LEU TYR SEQRES 12 B 420 HIS ALA ARG ASP PRO TYR ARG THR GLY LEU VAL VAL ILE SEQRES 13 B 420 VAL HIS PRO TRP GLU SER GLY MET ASP ASN SER PRO ALA SEQRES 14 B 420 TRP ASP LYS PRO LEU SER ARG VAL PRO VAL GLU ASN LEU SEQRES 15 B 420 PRO PRO TYR GLU ARG ARG ASP VAL LYS HIS VAL ASN PRO SEQRES 16 B 420 GLU GLU ARG PRO ARG LYS GLU ASP TYR ASP ARG TYR LEU SEQRES 17 B 420 SER LEU LEU TYR LEU PHE ARG ARG LEU GLU TYR ASP PRO SEQRES 18 B 420 ARG GLU ILE TYR ARG GLN SER PRO PHE LYS VAL VAL ASP SEQRES 19 B 420 VAL GLY PHE ASN ALA ILE LEU GLN ARG ALA ASN ARG ASP SEQRES 20 B 420 LEU TYR ALA LEU ALA VAL LEU LEU GLN GLU ASP PRO TYR SEQRES 21 B 420 GLU ILE GLU GLU TRP ILE VAL ARG GLY GLU VAL GLY LEU SEQRES 22 B 420 GLU ALA LEU TRP ASP ARG GLU ALA GLY PHE TYR PHE SER SEQRES 23 B 420 TRP ASP LEU VAL ALA GLY GLU PRO ILE ALA VAL LYS THR SEQRES 24 B 420 SER ALA GLY PHE LEU PRO LEU PHE ALA GLY THR PRO HIS SEQRES 25 B 420 GLN GLY ARG ALA SER LEU LEU ALA GLN GLU ALA GLU ARG SEQRES 26 B 420 TRP GLY GLU LYS ALA ARG TYR LEU LEU PRO SER VAL ASP SEQRES 27 B 420 PRO THR SER PRO PHE PHE GLU PRO GLY ARG TYR TRP ARG SEQRES 28 B 420 GLY PRO VAL TRP ILE ASN VAL ASN TRP MET VAL ALA GLU SEQRES 29 B 420 GLY PHE ARG ASP TYR GLY PHE ALA ALA LEU ALA ALA ARG SEQRES 30 B 420 LEU LYS ALA ASP ALA LEU ALA LEU MET GLU ARG GLU GLY SEQRES 31 B 420 PHE ARG GLU TYR TYR ASP PRO LEU THR GLY GLN GLY ARG SEQRES 32 B 420 GLY GLY GLU GLY PHE SER TRP SER ALA ALA LEU ALA LEU SEQRES 33 B 420 PHE TRP THR ARG HET CL A 501 1 HET MPD A 502 8 HET MPD A 503 8 HET GLC A 504 12 HET CL B 500 1 HET MPD B 501 8 HET MPD B 502 8 HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 CL 2(CL 1-) FORMUL 4 MPD 4(C6 H14 O2) FORMUL 6 GLC C6 H12 O6 FORMUL 10 HOH *542(H2 O) HELIX 1 AA1 PRO A 3 ASN A 15 1 13 HELIX 2 AA2 LEU A 33 THR A 44 1 12 HELIX 3 AA3 ASP A 47 GLN A 63 1 17 HELIX 4 AA4 VAL A 106 ASP A 118 1 13 HELIX 5 AA5 ASP A 120 ASP A 147 1 28 HELIX 6 AA6 HIS A 158 GLY A 163 5 6 HELIX 7 AA7 SER A 167 ALA A 169 5 3 HELIX 8 AA8 TRP A 170 ARG A 176 1 7 HELIX 9 AA9 ASP A 203 LEU A 217 1 15 HELIX 10 AB1 ASP A 220 SER A 228 1 9 HELIX 11 AB2 ASP A 234 LEU A 255 1 22 HELIX 12 AB3 PRO A 259 LEU A 276 1 18 HELIX 13 AB4 THR A 299 PHE A 303 5 5 HELIX 14 AB5 LEU A 304 GLY A 309 1 6 HELIX 15 AB6 HIS A 312 GLU A 328 1 17 HELIX 16 AB7 TRP A 355 TYR A 369 1 15 HELIX 17 AB8 PHE A 371 GLY A 390 1 20 HELIX 18 AB9 PHE A 408 THR A 419 1 12 HELIX 19 AC1 PRO B 3 SER B 16 1 14 HELIX 20 AC2 LEU B 33 THR B 44 1 12 HELIX 21 AC3 ASP B 47 GLN B 63 1 17 HELIX 22 AC4 VAL B 106 ASP B 118 1 13 HELIX 23 AC5 ASP B 120 ASP B 147 1 28 HELIX 24 AC6 HIS B 158 GLY B 163 5 6 HELIX 25 AC7 SER B 167 ALA B 169 5 3 HELIX 26 AC8 TRP B 170 ARG B 176 1 7 HELIX 27 AC9 ASN B 194 ARG B 198 5 5 HELIX 28 AD1 ARG B 200 LEU B 217 1 18 HELIX 29 AD2 ASP B 220 SER B 228 1 9 HELIX 30 AD3 ASP B 234 LEU B 255 1 22 HELIX 31 AD4 PRO B 259 LEU B 276 1 18 HELIX 32 AD5 THR B 299 PHE B 303 5 5 HELIX 33 AD6 LEU B 304 GLY B 309 1 6 HELIX 34 AD7 HIS B 312 GLU B 328 1 17 HELIX 35 AD8 TRP B 355 TYR B 369 1 15 HELIX 36 AD9 PHE B 371 GLY B 390 1 20 HELIX 37 AE1 PHE B 408 THR B 419 1 12 SHEET 1 AA1 3 GLN A 31 TRP A 32 0 SHEET 2 AA1 3 ILE A 72 PHE A 74 -1 O VAL A 73 N GLN A 31 SHEET 3 AA1 3 ALA A 97 THR A 98 -1 O ALA A 97 N PHE A 74 SHEET 1 AA2 2 ARG A 93 GLN A 95 0 SHEET 2 AA2 2 ARG B 93 GLN B 95 -1 O GLN B 95 N ARG A 93 SHEET 1 AA3 3 VAL A 232 VAL A 233 0 SHEET 2 AA3 3 TRP A 287 ASP A 288 -1 O TRP A 287 N VAL A 233 SHEET 3 AA3 3 GLU A 293 PRO A 294 -1 O GLU A 293 N ASP A 288 SHEET 1 AA4 2 TRP A 277 ASP A 278 0 SHEET 2 AA4 2 PHE A 283 TYR A 284 -1 O PHE A 283 N ASP A 278 SHEET 1 AA5 2 ARG A 392 TYR A 395 0 SHEET 2 AA5 2 GLY A 402 GLU A 406 -1 O ARG A 403 N TYR A 394 SHEET 1 AA6 3 GLN B 31 TRP B 32 0 SHEET 2 AA6 3 ILE B 72 PHE B 74 -1 O VAL B 73 N GLN B 31 SHEET 3 AA6 3 ALA B 97 THR B 98 -1 O ALA B 97 N PHE B 74 SHEET 1 AA7 3 VAL B 232 VAL B 233 0 SHEET 2 AA7 3 TRP B 287 ASP B 288 -1 O TRP B 287 N VAL B 233 SHEET 3 AA7 3 GLU B 293 PRO B 294 -1 O GLU B 293 N ASP B 288 SHEET 1 AA8 2 TRP B 277 ASP B 278 0 SHEET 2 AA8 2 PHE B 283 TYR B 284 -1 O PHE B 283 N ASP B 278 SHEET 1 AA9 2 ARG B 392 TYR B 395 0 SHEET 2 AA9 2 GLY B 402 GLU B 406 -1 O ARG B 403 N TYR B 394 CISPEP 1 LEU A 333 LEU A 334 0 -0.42 CISPEP 2 LEU B 333 LEU B 334 0 -2.64 CRYST1 93.445 93.445 254.141 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010701 0.006179 0.000000 0.00000 SCALE2 0.000000 0.012357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003935 0.00000