HEADER HYDROLASE 05-NOV-14 4WVI TITLE CRYSTAL STRUCTURE OF THE TYPE-I SIGNAL PEPTIDASE FROM STAPHYLOCOCCUS TITLE 2 AUREUS (SPSB) IN COMPLEX WITH A SUBSTRATE PEPTIDE (PEP2). COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,SIGNAL PEPTIDASE IB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 33-393, UNP RESIDUES 26-175; COMPND 5 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,SPASE IB,LEADER COMPND 6 PEPTIDASE IB; COMPND 7 EC: 3.4.21.89; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SUBSTRATE PEPTIDE (PEP2); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12, STAPHYLOCOCCUS AUREUS SOURCE 3 SUBSP. AUREUS STR. NEWMAN; SOURCE 4 ORGANISM_TAXID: 83333, 426430; SOURCE 5 STRAIN: K12, NEWMAN; SOURCE 6 GENE: MALE, Z5632, ECS5017, SPSB, SACOL0969; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMBP-PPROEXHTA; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 15 ORGANISM_TAXID: 1280 KEYWDS SPSB TYPE-I SIGNAL PEPTIDASE, PEPTIDE COMPLEX, CELL SECRETION, MBP KEYWDS 2 FUSION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.G.YOUNG,Y.T.TING,E.N.BAKER REVDAT 9 27-SEP-23 4WVI 1 HETSYN REVDAT 8 29-JUL-20 4WVI 1 COMPND REMARK HET HETNAM REVDAT 8 2 1 FORMUL LINK SITE ATOM REVDAT 7 01-JAN-20 4WVI 1 REMARK REVDAT 6 23-JAN-19 4WVI 1 SOURCE REVDAT 5 13-JUN-18 4WVI 1 REMARK REVDAT 4 25-APR-18 4WVI 1 JRNL REVDAT 3 20-SEP-17 4WVI 1 REMARK REVDAT 2 17-FEB-16 4WVI 1 JRNL REVDAT 1 23-SEP-15 4WVI 0 JRNL AUTH Y.T.TING,P.W.HARRIS,G.BATOT,M.A.BRIMBLE,E.N.BAKER,P.G.YOUNG JRNL TITL PEPTIDE BINDING TO A BACTERIAL SIGNAL PEPTIDASE VISUALIZED JRNL TITL 2 BY PEPTIDE TETHERING AND CARRIER-DRIVEN CRYSTALLIZATION. JRNL REF IUCRJ V. 3 10 2016 JRNL REFN ESSN 2052-2525 JRNL PMID 26870377 JRNL DOI 10.1107/S2052252515019971 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3421 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4075 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4203 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3922 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5720 ; 1.215 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9042 ; 0.741 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 5.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;33.150 ;25.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 658 ;12.378 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4818 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 929 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2122 ; 1.275 ; 2.320 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2121 ; 1.270 ; 2.319 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2646 ; 2.074 ; 3.466 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 - 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 2.07700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WVG REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 % PEG 8000, 20 % ETHYLENE GLYCOL, REMARK 280 100 MM SODIUM ACETATE PH 5.3 - 5.5, BATCH MODE, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.99450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.93950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.11600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.93950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.99450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.11600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 3 REMARK 465 TYR A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 ASP A 61 REMARK 465 GLY A 408 REMARK 465 LYS A 533 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 THR A 59 OG1 CG2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 LYS A 384 CG CD CE NZ REMARK 470 LYS A 406 CG CD CE NZ REMARK 470 LYS A 422 CG CD CE NZ REMARK 470 LYS A 450 CG CD CE NZ REMARK 470 LYS A 484 CG CD CE NZ REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 ASP A 515 CG OD1 OD2 REMARK 470 GLU A 532 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 332 O HOH A 701 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 59 76.36 -68.28 REMARK 500 ALA A 174 -83.17 -84.42 REMARK 500 ASN A 442 -109.17 58.14 REMARK 500 ASP A 505 -153.67 -143.52 REMARK 500 PHE A 531 139.10 -171.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1061 DISTANCE = 5.85 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WVG RELATED DB: PDB REMARK 900 RELATED ID: 4WVJ RELATED DB: PDB REMARK 900 RELATED ID: 4WVH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE MUTATIONS ARE CONSEQUENCE OF PCR REACTION. THE MUTATION R393N REMARK 999 WAS INTRODUCED TO STABILIZE THE LINKER REGION DBREF 4WVI A 13 372 UNP P0AEY0 MALE_ECO57 33 392 DBREF 4WVI A 377 526 UNP Q5HHB9 LEP_STAAC 26 175 DBREF 4WVI D 189 199 PDB 4WVI 4WVI 189 199 SEQADV 4WVI MET A 1 UNP P0AEY0 INITIATING METHIONINE SEQADV 4WVI SER A 2 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI TYR A 3 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI TYR A 4 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI HIS A 5 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI HIS A 6 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI HIS A 7 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI HIS A 8 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI HIS A 9 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI HIS A 10 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI HIS A 11 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI MET A 12 UNP P0AEY0 EXPRESSION TAG SEQADV 4WVI GLN A 28 UNP P0AEY0 GLU 48 SEE REMARK 999 SEQADV 4WVI TYR A 47 UNP P0AEY0 ASP 67 SEE REMARK 999 SEQADV 4WVI CYS A 78 UNP P0AEY0 GLN 98 ENGINEERED MUTATION SEQADV 4WVI GLY A 143 UNP P0AEY0 LYS 163 ENGINEERED MUTATION SEQADV 4WVI ASN A 373 UNP P0AEY0 ARG 393 SEE REMARK 999 SEQADV 4WVI ALA A 374 UNP P0AEY0 LINKER SEQADV 4WVI GLY A 375 UNP P0AEY0 LINKER SEQADV 4WVI ALA A 376 UNP P0AEY0 LINKER SEQADV 4WVI SER A 527 UNP Q5HHB9 EXPRESSION TAG SEQADV 4WVI HIS A 528 UNP Q5HHB9 EXPRESSION TAG SEQADV 4WVI PRO A 529 UNP Q5HHB9 EXPRESSION TAG SEQADV 4WVI GLN A 530 UNP Q5HHB9 EXPRESSION TAG SEQADV 4WVI PHE A 531 UNP Q5HHB9 EXPRESSION TAG SEQADV 4WVI GLU A 532 UNP Q5HHB9 EXPRESSION TAG SEQADV 4WVI LYS A 533 UNP Q5HHB9 EXPRESSION TAG SEQRES 1 A 533 MET SER TYR TYR HIS HIS HIS HIS HIS HIS HIS MET LEU SEQRES 2 A 533 VAL ILE TRP ILE ASN GLY ASP LYS GLY TYR ASN GLY LEU SEQRES 3 A 533 ALA GLN VAL GLY LYS LYS PHE GLU LYS ASP THR GLY ILE SEQRES 4 A 533 LYS VAL THR VAL GLU HIS PRO TYR LYS LEU GLU GLU LYS SEQRES 5 A 533 PHE PRO GLN VAL ALA ALA THR GLY ASP GLY PRO ASP ILE SEQRES 6 A 533 ILE PHE TRP ALA HIS ASP ARG PHE GLY GLY TYR ALA CYS SEQRES 7 A 533 SER GLY LEU LEU ALA GLU ILE THR PRO ASP LYS ALA PHE SEQRES 8 A 533 GLN ASP LYS LEU TYR PRO PHE THR TRP ASP ALA VAL ARG SEQRES 9 A 533 TYR ASN GLY LYS LEU ILE ALA TYR PRO ILE ALA VAL GLU SEQRES 10 A 533 ALA LEU SER LEU ILE TYR ASN LYS ASP LEU LEU PRO ASN SEQRES 11 A 533 PRO PRO LYS THR TRP GLU GLU ILE PRO ALA LEU ASP GLY SEQRES 12 A 533 GLU LEU LYS ALA LYS GLY LYS SER ALA LEU MET PHE ASN SEQRES 13 A 533 LEU GLN GLU PRO TYR PHE THR TRP PRO LEU ILE ALA ALA SEQRES 14 A 533 ASP GLY GLY TYR ALA PHE LYS TYR GLU ASN GLY LYS TYR SEQRES 15 A 533 ASP ILE LYS ASP VAL GLY VAL ASP ASN ALA GLY ALA LYS SEQRES 16 A 533 ALA GLY LEU THR PHE LEU VAL ASP LEU ILE LYS ASN LYS SEQRES 17 A 533 HIS MET ASN ALA ASP THR ASP TYR SER ILE ALA GLU ALA SEQRES 18 A 533 ALA PHE ASN LYS GLY GLU THR ALA MET THR ILE ASN GLY SEQRES 19 A 533 PRO TRP ALA TRP SER ASN ILE ASP THR SER LYS VAL ASN SEQRES 20 A 533 TYR GLY VAL THR VAL LEU PRO THR PHE LYS GLY GLN PRO SEQRES 21 A 533 SER LYS PRO PHE VAL GLY VAL LEU SER ALA GLY ILE ASN SEQRES 22 A 533 ALA ALA SER PRO ASN LYS GLU LEU ALA LYS GLU PHE LEU SEQRES 23 A 533 GLU ASN TYR LEU LEU THR ASP GLU GLY LEU GLU ALA VAL SEQRES 24 A 533 ASN LYS ASP LYS PRO LEU GLY ALA VAL ALA LEU LYS SER SEQRES 25 A 533 TYR GLU GLU GLU LEU ALA LYS ASP PRO ARG ILE ALA ALA SEQRES 26 A 533 THR MET GLU ASN ALA GLN LYS GLY GLU ILE MET PRO ASN SEQRES 27 A 533 ILE PRO GLN MET SER ALA PHE TRP TYR ALA VAL ARG THR SEQRES 28 A 533 ALA VAL ILE ASN ALA ALA SER GLY ARG GLN THR VAL ASP SEQRES 29 A 533 GLU ALA LEU LYS ASP ALA GLN THR ASN ALA GLY ALA ILE SEQRES 30 A 533 VAL THR PRO TYR THR ILE LYS GLY GLU SER MET ASP PRO SEQRES 31 A 533 THR LEU LYS ASP GLY GLU ARG VAL ALA VAL ASN ILE VAL SEQRES 32 A 533 GLY TYR LYS THR GLY GLY LEU GLU LYS GLY ASN VAL VAL SEQRES 33 A 533 VAL PHE HIS ALA ASN LYS ASN ASP ASP TYR VAL LYS ARG SEQRES 34 A 533 VAL ILE GLY VAL PRO GLY ASP LYS VAL GLU TYR LYS ASN SEQRES 35 A 533 ASP THR LEU TYR VAL ASN GLY LYS LYS GLN ASP GLU PRO SEQRES 36 A 533 TYR LEU ASN TYR ASN LEU LYS HIS LYS GLN GLY ASP TYR SEQRES 37 A 533 ILE THR GLY THR PHE GLN VAL LYS ASP LEU PRO ASN ALA SEQRES 38 A 533 ASN PRO LYS SER ASN VAL ILE PRO LYS GLY LYS TYR LEU SEQRES 39 A 533 VAL LEU GLY ASP ASN ARG GLU VAL SER LYS ASP SER ARG SEQRES 40 A 533 ALA PHE GLY LEU ILE ASP GLU ASP GLN ILE VAL GLY LYS SEQRES 41 A 533 VAL SER PHE ARG PHE TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 D 11 GLY GLY GLY GLY ALA VAL PRO THR ALA LYS ALA HET GLC B 1 12 HET GLC B 2 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 4 HOH *371(H2 O) HELIX 1 AA1 GLY A 22 GLY A 38 1 17 HELIX 2 AA2 LYS A 48 ALA A 57 1 10 HELIX 3 AA3 ARG A 72 SER A 79 1 8 HELIX 4 AA4 ASP A 88 ASP A 93 1 6 HELIX 5 AA5 TYR A 96 VAL A 103 1 8 HELIX 6 AA6 THR A 134 GLU A 136 5 3 HELIX 7 AA7 GLU A 137 ALA A 147 1 11 HELIX 8 AA8 GLU A 159 ASP A 170 1 12 HELIX 9 AA9 ASN A 191 ASN A 207 1 17 HELIX 10 AB1 ASP A 215 LYS A 225 1 11 HELIX 11 AB2 GLY A 234 TRP A 236 5 3 HELIX 12 AB3 ALA A 237 LYS A 245 1 9 HELIX 13 AB4 ASN A 278 TYR A 289 1 12 HELIX 14 AB5 THR A 292 LYS A 303 1 12 HELIX 15 AB6 LEU A 310 ALA A 318 1 9 HELIX 16 AB7 ASP A 320 GLY A 333 1 14 HELIX 17 AB8 GLN A 341 SER A 358 1 18 HELIX 18 AB9 THR A 362 ALA A 376 1 15 HELIX 19 AC1 GLU A 454 TYR A 456 5 3 HELIX 20 AC2 LEU A 457 LYS A 462 1 6 HELIX 21 AC3 LYS A 476 LEU A 478 5 3 HELIX 22 AC4 ASP A 505 GLY A 510 1 6 SHEET 1 AA1 6 VAL A 41 GLU A 44 0 SHEET 2 AA1 6 LEU A 13 TRP A 16 1 N ILE A 15 O GLU A 44 SHEET 3 AA1 6 ILE A 65 ALA A 69 1 O PHE A 67 N TRP A 16 SHEET 4 AA1 6 PHE A 264 ILE A 272 -1 O GLY A 271 N ILE A 66 SHEET 5 AA1 6 TYR A 112 GLU A 117 -1 N GLU A 117 O GLY A 266 SHEET 6 AA1 6 ALA A 307 VAL A 308 -1 O ALA A 307 N VAL A 116 SHEET 1 AA2 5 VAL A 41 GLU A 44 0 SHEET 2 AA2 5 LEU A 13 TRP A 16 1 N ILE A 15 O GLU A 44 SHEET 3 AA2 5 ILE A 65 ALA A 69 1 O PHE A 67 N TRP A 16 SHEET 4 AA2 5 PHE A 264 ILE A 272 -1 O GLY A 271 N ILE A 66 SHEET 5 AA2 5 GLU A 334 ILE A 335 1 O GLU A 334 N VAL A 265 SHEET 1 AA3 2 ARG A 104 TYR A 105 0 SHEET 2 AA3 2 LYS A 108 LEU A 109 -1 O LYS A 108 N TYR A 105 SHEET 1 AA4 4 SER A 151 LEU A 153 0 SHEET 2 AA4 4 THR A 228 ASN A 233 1 O ALA A 229 N SER A 151 SHEET 3 AA4 4 SER A 120 ASN A 124 -1 N ASN A 124 O ALA A 229 SHEET 4 AA4 4 TYR A 248 THR A 251 -1 O THR A 251 N LEU A 121 SHEET 1 AA5 2 TYR A 173 GLU A 178 0 SHEET 2 AA5 2 LYS A 181 GLY A 188 -1 O LYS A 181 N GLU A 178 SHEET 1 AA6 9 ILE A 512 ASP A 513 0 SHEET 2 AA6 9 LYS A 492 LEU A 496 -1 N TYR A 493 O ILE A 512 SHEET 3 AA6 9 ASP A 425 GLY A 432 -1 N ILE A 431 O LEU A 494 SHEET 4 AA6 9 THR D 196 LYS D 198 1 O LYS D 198 N ASP A 425 SHEET 5 AA6 9 VAL A 378 LYS A 384 1 N LYS A 384 O ALA D 197 SHEET 6 AA6 9 ARG A 397 ILE A 402 -1 O VAL A 398 N TYR A 381 SHEET 7 AA6 9 ILE A 517 VAL A 521 -1 O LYS A 520 N ASN A 401 SHEET 8 AA6 9 VAL A 415 HIS A 419 -1 N VAL A 415 O VAL A 521 SHEET 9 AA6 9 ASP A 425 GLY A 432 -1 O TYR A 426 N PHE A 418 SHEET 1 AA7 4 LYS A 450 GLN A 452 0 SHEET 2 AA7 4 THR A 444 VAL A 447 -1 N LEU A 445 O GLN A 452 SHEET 3 AA7 4 VAL A 438 LYS A 441 -1 N GLU A 439 O TYR A 446 SHEET 4 AA7 4 PHE A 473 GLN A 474 -1 O PHE A 473 N TYR A 440 LINK SG CYS A 78 CA GLY D 189 1555 1555 1.64 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.43 CISPEP 1 ASP A 389 PRO A 390 0 4.31 CRYST1 63.989 80.232 119.879 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008342 0.00000