HEADER SUGAR BINDING PROTEIN 07-NOV-14 4WVW TITLE CHICKEN GALECTIN-8 N-TERMINAL DOMAIN COMPLEXED WITH 3'-SIALYL-LACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 9-152; COMPND 5 SYNONYM: GALECTIN 8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS LECTIN, CARBOHYDRATE RECOGNITION DOMAIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.M.RUIZ,A.ROMERO REVDAT 3 10-JAN-24 4WVW 1 HETSYN REVDAT 2 29-JUL-20 4WVW 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 23-SEP-15 4WVW 0 JRNL AUTH F.M.RUIZ,U.GILLES,I.LINDNER,S.ANDRE,A.ROMERO,D.REUSCH, JRNL AUTH 2 H.J.GABIUS JRNL TITL COMBINING CRYSTALLOGRAPHY AND HYDROGEN-DEUTERIUM EXCHANGE TO JRNL TITL 2 STUDY GALECTIN-LIGAND COMPLEXES. JRNL REF CHEMISTRY V. 21 13558 2015 JRNL REFN ISSN 0947-6539 JRNL PMID 26270612 JRNL DOI 10.1002/CHEM.201501961 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 3098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5074 - 4.1182 1.00 2644 117 0.1690 0.1381 REMARK 3 2 4.1182 - 3.2690 1.00 2575 157 0.1422 0.1644 REMARK 3 3 3.2690 - 2.8558 1.00 2632 125 0.1759 0.1745 REMARK 3 4 2.8558 - 2.5947 1.00 2585 154 0.1833 0.2132 REMARK 3 5 2.5947 - 2.4087 1.00 2607 136 0.1818 0.2364 REMARK 3 6 2.4087 - 2.2667 1.00 2623 119 0.1706 0.2132 REMARK 3 7 2.2667 - 2.1532 1.00 2619 141 0.1579 0.1707 REMARK 3 8 2.1532 - 2.0595 1.00 2634 122 0.1573 0.2127 REMARK 3 9 2.0595 - 1.9802 1.00 2584 160 0.1636 0.2041 REMARK 3 10 1.9802 - 1.9119 1.00 2593 138 0.1648 0.1834 REMARK 3 11 1.9119 - 1.8521 1.00 2581 165 0.1661 0.1817 REMARK 3 12 1.8521 - 1.7991 1.00 2565 161 0.1769 0.2204 REMARK 3 13 1.7991 - 1.7518 1.00 2598 161 0.1839 0.2184 REMARK 3 14 1.7518 - 1.7090 1.00 2571 136 0.1915 0.1935 REMARK 3 15 1.7090 - 1.6702 1.00 2655 117 0.1937 0.1961 REMARK 3 16 1.6702 - 1.6346 1.00 2614 150 0.1936 0.2096 REMARK 3 17 1.6346 - 1.6019 1.00 2574 138 0.2120 0.2321 REMARK 3 18 1.6019 - 1.5717 1.00 2580 169 0.2151 0.2277 REMARK 3 19 1.5717 - 1.5436 1.00 2629 141 0.2359 0.2450 REMARK 3 20 1.5436 - 1.5175 1.00 2618 120 0.2731 0.3092 REMARK 3 21 1.5175 - 1.4930 1.00 2587 151 0.2622 0.2820 REMARK 3 22 1.4930 - 1.4700 1.00 2632 120 0.2916 0.3513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1278 REMARK 3 ANGLE : 1.628 1739 REMARK 3 CHIRALITY : 0.089 200 REMARK 3 PLANARITY : 0.006 213 REMARK 3 DIHEDRAL : 12.859 475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 9:37) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8422 15.4093 0.3558 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.1715 REMARK 3 T33: 0.1815 T12: 0.0727 REMARK 3 T13: 0.0065 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 0.3934 L22: 1.2617 REMARK 3 L33: 0.9362 L12: -0.4640 REMARK 3 L13: 0.4886 L23: -0.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: -0.0553 S13: 0.0312 REMARK 3 S21: -0.1250 S22: -0.0717 S23: 0.3401 REMARK 3 S31: -0.1972 S32: -0.4827 S33: 0.0647 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 38:80) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4427 20.3378 -1.1244 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.0720 REMARK 3 T33: 0.1261 T12: -0.0328 REMARK 3 T13: 0.0263 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.7415 L22: 2.2345 REMARK 3 L33: 0.8689 L12: -0.0654 REMARK 3 L13: 0.7738 L23: 0.5114 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.0601 S13: 0.1666 REMARK 3 S21: -0.1648 S22: 0.0743 S23: -0.0374 REMARK 3 S31: -0.3665 S32: 0.1700 S33: -0.1186 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 81:90) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7328 19.3439 7.9898 REMARK 3 T TENSOR REMARK 3 T11: 0.2188 T22: 0.1650 REMARK 3 T33: 0.1877 T12: -0.0685 REMARK 3 T13: 0.0220 T23: -0.0927 REMARK 3 L TENSOR REMARK 3 L11: 0.9018 L22: 3.3856 REMARK 3 L33: 3.6692 L12: -0.6653 REMARK 3 L13: -0.2442 L23: 3.0634 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: -0.3562 S13: 0.2450 REMARK 3 S21: 0.3392 S22: 0.0871 S23: -0.3153 REMARK 3 S31: -0.2427 S32: 0.2468 S33: -0.1028 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 91:152) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8403 10.6916 -1.4661 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.0611 REMARK 3 T33: 0.0936 T12: -0.0092 REMARK 3 T13: 0.0182 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.0077 L22: 1.7647 REMARK 3 L33: 1.9956 L12: -0.3925 REMARK 3 L13: 0.3713 L23: 0.4931 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: 0.0090 S13: 0.0004 REMARK 3 S21: -0.0610 S22: -0.0216 S23: 0.0176 REMARK 3 S31: -0.0361 S32: -0.0407 S33: -0.0369 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 49.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.90 REMARK 200 R MERGE FOR SHELL (I) : 1.80700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2YV8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% W/V PEG 4000, 100 MM TRIS-HCL PH REMARK 280 8.5, 200 MM SODIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.32900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.65800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.49350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 165.82250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.16450 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.32900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 132.65800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 165.82250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 99.49350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.16450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 323 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 373 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GAL B 2 O6 SIA B 3 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 55.02 37.34 REMARK 500 ILE A 16 120.44 32.31 REMARK 500 TRP A 71 -127.43 59.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 422 DISTANCE = 6.23 ANGSTROMS DBREF 4WVW A 9 152 UNP Q1W2P6 Q1W2P6_CHICK 9 152 SEQRES 1 A 144 LYS LYS ILE SER ASN PRO ILE ILE PRO TYR VAL GLY THR SEQRES 2 A 144 ILE LEU GLY GLY LEU VAL PRO GLY GLU LEU ILE VAL LEU SEQRES 3 A 144 HIS GLY SER ILE PRO ASP ASP ALA ASP ARG PHE GLN VAL SEQRES 4 A 144 ASP LEU GLN CYS GLY SER SER ILE LYS PRO ARG ALA ASP SEQRES 5 A 144 VAL ALA PHE HIS PHE ASN PRO ARG PHE LYS TRP SER GLY SEQRES 6 A 144 CYS VAL VAL CYS ASN THR LEU GLU ARG GLU LYS TRP GLY SEQRES 7 A 144 TRP GLU GLU ILE THR TYR GLU MET PRO PHE GLN LYS GLY SEQRES 8 A 144 ARG PRO PHE GLU ILE VAL ILE MET ILE LEU LYS ASP LYS SEQRES 9 A 144 PHE GLN VAL SER VAL ASN LYS LYS HIS LEU LEU LEU TYR SEQRES 10 A 144 ASN HIS ARG ILE SER LEU GLU ARG ILE ASP THR LEU GLY SEQRES 11 A 144 ILE TYR GLY LYS VAL GLN ILE LYS SER ILE GLU PHE VAL SEQRES 12 A 144 SER HET GLC B 1 12 HET GAL B 2 11 HET SIA B 3 20 HET PEG A 202 7 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 2 GLC C6 H12 O6 FORMUL 2 GAL C6 H12 O6 FORMUL 2 SIA C11 H19 N O9 FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *191(H2 O) HELIX 1 AA1 SER A 130 ILE A 134 5 5 SHEET 1 AA1 6 ILE A 11 SER A 12 0 SHEET 2 AA1 6 GLN A 144 VAL A 151 -1 O ILE A 148 N ILE A 11 SHEET 3 AA1 6 LEU A 31 SER A 37 -1 N VAL A 33 O GLU A 149 SHEET 4 AA1 6 PRO A 101 ILE A 108 -1 O ILE A 104 N LEU A 34 SHEET 5 AA1 6 LYS A 112 VAL A 117 -1 O GLN A 114 N MET A 107 SHEET 6 AA1 6 LYS A 120 ASN A 126 -1 O LEU A 123 N VAL A 115 SHEET 1 AA2 6 TYR A 18 THR A 21 0 SHEET 2 AA2 6 THR A 136 GLY A 141 -1 O LEU A 137 N GLY A 20 SHEET 3 AA2 6 PHE A 45 GLN A 50 -1 N ASP A 48 O GLY A 138 SHEET 4 AA2 6 VAL A 61 ARG A 68 -1 O PHE A 65 N VAL A 47 SHEET 5 AA2 6 CYS A 74 GLU A 81 -1 O CYS A 74 N ARG A 68 SHEET 6 AA2 6 LYS A 84 TRP A 85 -1 O LYS A 84 N GLU A 81 SHEET 1 AA3 6 TYR A 18 THR A 21 0 SHEET 2 AA3 6 THR A 136 GLY A 141 -1 O LEU A 137 N GLY A 20 SHEET 3 AA3 6 PHE A 45 GLN A 50 -1 N ASP A 48 O GLY A 138 SHEET 4 AA3 6 VAL A 61 ARG A 68 -1 O PHE A 65 N VAL A 47 SHEET 5 AA3 6 CYS A 74 GLU A 81 -1 O CYS A 74 N ARG A 68 SHEET 6 AA3 6 GLU A 89 THR A 91 -1 O THR A 91 N VAL A 75 LINK O4 GLC B 1 C1 GAL B 2 1555 1555 1.41 LINK O3 GAL B 2 C2 SIA B 3 1555 1555 1.50 CISPEP 1 ILE A 16 PRO A 17 0 4.48 CISPEP 2 LYS A 56 PRO A 57 0 -2.33 CRYST1 56.459 56.459 198.987 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017712 0.010226 0.000000 0.00000 SCALE2 0.000000 0.020452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005025 0.00000