HEADER SIGNALING PROTEIN 10-NOV-14 4WW3 TITLE CRYSTAL STRUCTURE OF THE LUMI INTERMEDIATE OF SQUID RHODOPSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 9-358 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TODARODES PACIFICUS; SOURCE 3 ORGANISM_COMMON: JAPANESE FLYING SQUID; SOURCE 4 ORGANISM_TAXID: 6637 KEYWDS ANIMALS, DECAPODIFORMES, INOSITOL 1, 4, 5-TRISPHOSPHATE, LIGHT, KEYWDS 2 MODELS, CHEMICAL, PHOTOCHEMISTRY, PROTEIN CONFORMATION, RHODOPSIN, KEYWDS 3 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.MURAKAMI,T.KOUYAMA REVDAT 4 08-NOV-23 4WW3 1 HETSYN REVDAT 3 29-JUL-20 4WW3 1 COMPND REMARK HETNAM SITE REVDAT 2 05-FEB-20 4WW3 1 REMARK REVDAT 1 17-JUN-15 4WW3 0 JRNL AUTH M.MURAKAMI,T.KOUYAMA JRNL TITL CRYSTALLOGRAPHIC STUDY OF THE LUMI INTERMEDIATE OF SQUID JRNL TITL 2 RHODOPSIN JRNL REF PLOS ONE V. 10 26970 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26024518 JRNL DOI 10.1371/JOURNAL.PONE.0126970 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2219514.980 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 27701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.290 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1351 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4110 REMARK 3 BIN R VALUE (WORKING SET) : 0.5270 REMARK 3 BIN FREE R VALUE : 0.4990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 196 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5543 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 236 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.03000 REMARK 3 B22 (A**2) : 13.03000 REMARK 3 B33 (A**2) : -26.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.63 REMARK 3 ESD FROM SIGMAA (A) : 1.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.65 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.05 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 88.21 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : RET-TRANS.PAR REMARK 3 PARAMETER FILE 5 : BOG.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : &_1_TOPOLOGY_INFILE_1 REMARK 3 TOPOLOGY FILE 2 : &_1_TOPOLOGY_INFILE_2 REMARK 3 TOPOLOGY FILE 3 : &_1_TOPOLOGY_INFILE_3 REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28450 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.799 REMARK 200 RESOLUTION RANGE LOW (A) : 52.848 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13300 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : 0.49400 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.2 REMARK 200 STARTING MODEL: 2Z73 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0M AMMONIUM SULFATE, 20MM MES, 50MM REMARK 280 EDTA, 10MM BETA-MERCAPTOETHANOL, PH 6.4, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.84667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.92333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.84667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.92333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 356 REMARK 465 GLY B 357 REMARK 465 GLU B 358 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 66 28.87 -70.99 REMARK 500 PHE A 97 -9.57 -55.26 REMARK 500 TRP A 162 -73.27 -49.18 REMARK 500 SER A 187 -168.18 -162.53 REMARK 500 ILE A 191 -72.01 -82.35 REMARK 500 SER A 192 111.01 -35.15 REMARK 500 PHE A 209 -69.30 -100.39 REMARK 500 MET A 225 36.09 -76.37 REMARK 500 SER A 226 5.02 -157.64 REMARK 500 ALA A 243 -163.36 -61.41 REMARK 500 LYS A 248 -74.17 -46.72 REMARK 500 PHE A 286 -32.73 -131.22 REMARK 500 PRO A 288 92.72 -68.54 REMARK 500 VAL A 292 83.77 -64.90 REMARK 500 GLN A 298 -85.68 -54.35 REMARK 500 ALA A 308 14.83 -69.27 REMARK 500 PRO A 331 -24.32 -36.15 REMARK 500 LEU A 334 27.26 -78.94 REMARK 500 THR A 335 -72.28 -58.73 REMARK 500 PRO B 15 1.03 -63.30 REMARK 500 THR B 62 102.08 -50.85 REMARK 500 GLN B 66 2.69 -64.48 REMARK 500 LYS B 100 144.29 -177.30 REMARK 500 ILE B 137 -57.75 -129.90 REMARK 500 ALA B 176 143.33 -172.25 REMARK 500 MET B 225 34.09 -69.78 REMARK 500 ALA B 236 6.52 -69.32 REMARK 500 LEU B 241 25.92 39.76 REMARK 500 ALA B 243 -90.64 -74.86 REMARK 500 PRO B 288 93.13 -69.49 REMARK 500 SER B 318 -14.67 -154.97 REMARK 500 THR B 329 -48.55 -142.59 REMARK 500 CYS B 337 70.02 -160.40 REMARK 500 GLN B 338 141.79 -37.74 REMARK 500 THR B 352 91.28 -61.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLM A 402 REMARK 610 PLM A 403 REMARK 610 PLM B 403 REMARK 610 PLM B 404 REMARK 610 PC1 B 406 DBREF 4WW3 A 9 358 UNP P31356 OPSD_TODPA 9 358 DBREF 4WW3 B 9 358 UNP P31356 OPSD_TODPA 9 358 SEQRES 1 A 350 GLU THR TRP TRP TYR ASN PRO SER ILE VAL VAL HIS PRO SEQRES 2 A 350 HIS TRP ARG GLU PHE ASP GLN VAL PRO ASP ALA VAL TYR SEQRES 3 A 350 TYR SER LEU GLY ILE PHE ILE GLY ILE CYS GLY ILE ILE SEQRES 4 A 350 GLY CYS GLY GLY ASN GLY ILE VAL ILE TYR LEU PHE THR SEQRES 5 A 350 LYS THR LYS SER LEU GLN THR PRO ALA ASN MET PHE ILE SEQRES 6 A 350 ILE ASN LEU ALA PHE SER ASP PHE THR PHE SER LEU VAL SEQRES 7 A 350 ASN GLY PHE PRO LEU MET THR ILE SER CYS PHE LEU LYS SEQRES 8 A 350 LYS TRP ILE PHE GLY PHE ALA ALA CYS LYS VAL TYR GLY SEQRES 9 A 350 PHE ILE GLY GLY ILE PHE GLY PHE MET SER ILE MET THR SEQRES 10 A 350 MET ALA MET ILE SER ILE ASP ARG TYR ASN VAL ILE GLY SEQRES 11 A 350 ARG PRO MET ALA ALA SER LYS LYS MET SER HIS ARG ARG SEQRES 12 A 350 ALA PHE ILE MET ILE ILE PHE VAL TRP LEU TRP SER VAL SEQRES 13 A 350 LEU TRP ALA ILE GLY PRO ILE PHE GLY TRP GLY ALA TYR SEQRES 14 A 350 THR LEU GLU GLY VAL LEU CYS ASN CYS SER PHE ASP TYR SEQRES 15 A 350 ILE SER ARG ASP SER THR THR ARG SER ASN ILE LEU CYS SEQRES 16 A 350 MET PHE ILE LEU GLY PHE PHE GLY PRO ILE LEU ILE ILE SEQRES 17 A 350 PHE PHE CYS TYR PHE ASN ILE VAL MET SER VAL SER ASN SEQRES 18 A 350 HIS GLU LYS GLU MET ALA ALA MET ALA LYS ARG LEU ASN SEQRES 19 A 350 ALA LYS GLU LEU ARG LYS ALA GLN ALA GLY ALA ASN ALA SEQRES 20 A 350 GLU MET ARG LEU ALA LYS ILE SER ILE VAL ILE VAL SER SEQRES 21 A 350 GLN PHE LEU LEU SER TRP SER PRO TYR ALA VAL VAL ALA SEQRES 22 A 350 LEU LEU ALA GLN PHE GLY PRO LEU GLU TRP VAL THR PRO SEQRES 23 A 350 TYR ALA ALA GLN LEU PRO VAL MET PHE ALA LYS ALA SER SEQRES 24 A 350 ALA ILE HIS ASN PRO MET ILE TYR SER VAL SER HIS PRO SEQRES 25 A 350 LYS PHE ARG GLU ALA ILE SER GLN THR PHE PRO TRP VAL SEQRES 26 A 350 LEU THR CYS CYS GLN PHE ASP ASP LYS GLU THR GLU ASP SEQRES 27 A 350 ASP LYS ASP ALA GLU THR GLU ILE PRO ALA GLY GLU SEQRES 1 B 350 GLU THR TRP TRP TYR ASN PRO SER ILE VAL VAL HIS PRO SEQRES 2 B 350 HIS TRP ARG GLU PHE ASP GLN VAL PRO ASP ALA VAL TYR SEQRES 3 B 350 TYR SER LEU GLY ILE PHE ILE GLY ILE CYS GLY ILE ILE SEQRES 4 B 350 GLY CYS GLY GLY ASN GLY ILE VAL ILE TYR LEU PHE THR SEQRES 5 B 350 LYS THR LYS SER LEU GLN THR PRO ALA ASN MET PHE ILE SEQRES 6 B 350 ILE ASN LEU ALA PHE SER ASP PHE THR PHE SER LEU VAL SEQRES 7 B 350 ASN GLY PHE PRO LEU MET THR ILE SER CYS PHE LEU LYS SEQRES 8 B 350 LYS TRP ILE PHE GLY PHE ALA ALA CYS LYS VAL TYR GLY SEQRES 9 B 350 PHE ILE GLY GLY ILE PHE GLY PHE MET SER ILE MET THR SEQRES 10 B 350 MET ALA MET ILE SER ILE ASP ARG TYR ASN VAL ILE GLY SEQRES 11 B 350 ARG PRO MET ALA ALA SER LYS LYS MET SER HIS ARG ARG SEQRES 12 B 350 ALA PHE ILE MET ILE ILE PHE VAL TRP LEU TRP SER VAL SEQRES 13 B 350 LEU TRP ALA ILE GLY PRO ILE PHE GLY TRP GLY ALA TYR SEQRES 14 B 350 THR LEU GLU GLY VAL LEU CYS ASN CYS SER PHE ASP TYR SEQRES 15 B 350 ILE SER ARG ASP SER THR THR ARG SER ASN ILE LEU CYS SEQRES 16 B 350 MET PHE ILE LEU GLY PHE PHE GLY PRO ILE LEU ILE ILE SEQRES 17 B 350 PHE PHE CYS TYR PHE ASN ILE VAL MET SER VAL SER ASN SEQRES 18 B 350 HIS GLU LYS GLU MET ALA ALA MET ALA LYS ARG LEU ASN SEQRES 19 B 350 ALA LYS GLU LEU ARG LYS ALA GLN ALA GLY ALA ASN ALA SEQRES 20 B 350 GLU MET ARG LEU ALA LYS ILE SER ILE VAL ILE VAL SER SEQRES 21 B 350 GLN PHE LEU LEU SER TRP SER PRO TYR ALA VAL VAL ALA SEQRES 22 B 350 LEU LEU ALA GLN PHE GLY PRO LEU GLU TRP VAL THR PRO SEQRES 23 B 350 TYR ALA ALA GLN LEU PRO VAL MET PHE ALA LYS ALA SER SEQRES 24 B 350 ALA ILE HIS ASN PRO MET ILE TYR SER VAL SER HIS PRO SEQRES 25 B 350 LYS PHE ARG GLU ALA ILE SER GLN THR PHE PRO TRP VAL SEQRES 26 B 350 LEU THR CYS CYS GLN PHE ASP ASP LYS GLU THR GLU ASP SEQRES 27 B 350 ASP LYS ASP ALA GLU THR GLU ILE PRO ALA GLY GLU HET RET A 401 20 HET PLM A 402 17 HET PLM A 403 17 HET TWT A 404 22 HET BOG A 405 20 HET SO4 B 401 5 HET RET B 402 20 HET PLM B 403 17 HET PLM B 404 17 HET TWT B 405 22 HET PC1 B 406 39 HET BOG B 407 20 HETNAM RET RETINAL HETNAM PLM PALMITIC ACID HETNAM TWT DOCOSANE HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM SO4 SULFATE ION HETNAM PC1 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE HETSYN PC1 3-SN-PHOSPHATIDYLCHOLINE FORMUL 3 RET 2(C20 H28 O) FORMUL 4 PLM 4(C16 H32 O2) FORMUL 6 TWT 2(C22 H46) FORMUL 7 BOG 2(C14 H28 O6) FORMUL 8 SO4 O4 S 2- FORMUL 13 PC1 C44 H88 N O8 P FORMUL 15 HOH *59(H2 O) HELIX 1 AA1 HIS A 20 PHE A 26 1 7 HELIX 2 AA2 PRO A 30 THR A 62 1 33 HELIX 3 AA3 LYS A 63 GLN A 66 5 4 HELIX 4 AA4 THR A 67 PRO A 68 5 2 HELIX 5 AA5 ALA A 69 GLY A 88 1 20 HELIX 6 AA6 PRO A 90 LEU A 98 1 9 HELIX 7 AA7 PHE A 103 ILE A 137 1 35 HELIX 8 AA8 SER A 148 GLY A 169 1 22 HELIX 9 AA9 PRO A 170 GLY A 173 5 4 HELIX 10 AB1 ASP A 194 PHE A 209 1 16 HELIX 11 AB2 PHE A 209 MET A 225 1 17 HELIX 12 AB3 SER A 226 LYS A 239 1 14 HELIX 13 AB4 GLU A 245 GLY A 287 1 43 HELIX 14 AB5 THR A 293 ALA A 306 1 14 HELIX 15 AB6 SER A 307 ILE A 309 5 3 HELIX 16 AB7 HIS A 310 HIS A 319 1 10 HELIX 17 AB8 HIS A 319 PHE A 330 1 12 HELIX 18 AB9 ASP A 340 GLU A 343 5 4 HELIX 19 AC1 THR A 344 THR A 352 1 9 HELIX 20 AC2 ILE A 354 GLU A 358 5 5 HELIX 21 AC3 HIS B 20 PHE B 26 1 7 HELIX 22 AC4 PRO B 30 THR B 62 1 33 HELIX 23 AC5 LYS B 63 GLN B 66 5 4 HELIX 24 AC6 THR B 67 PRO B 68 5 2 HELIX 25 AC7 ALA B 69 GLY B 88 1 20 HELIX 26 AC8 PRO B 90 LEU B 98 1 9 HELIX 27 AC9 PHE B 103 ILE B 137 1 35 HELIX 28 AD1 SER B 148 PHE B 172 1 25 HELIX 29 AD2 ASP B 194 PHE B 209 1 16 HELIX 30 AD3 PHE B 209 MET B 225 1 17 HELIX 31 AD4 SER B 226 LYS B 239 1 14 HELIX 32 AD5 LYS B 244 GLY B 287 1 44 HELIX 33 AD6 PRO B 288 VAL B 292 5 5 HELIX 34 AD7 THR B 293 ALA B 306 1 14 HELIX 35 AD8 ILE B 309 VAL B 317 1 9 HELIX 36 AD9 HIS B 319 GLN B 328 1 10 HELIX 37 AE1 PHE B 330 GLN B 338 5 9 HELIX 38 AE2 THR B 344 THR B 352 1 9 SHEET 1 AA1 2 TYR A 177 LEU A 179 0 SHEET 2 AA1 2 CYS A 186 PHE A 188 -1 O SER A 187 N THR A 178 SHEET 1 AA2 2 TYR B 177 GLU B 180 0 SHEET 2 AA2 2 ASN B 185 PHE B 188 -1 O SER B 187 N THR B 178 SSBOND 1 CYS A 108 CYS A 186 1555 1555 2.04 SSBOND 2 CYS B 108 CYS B 186 1555 1555 2.04 LINK NZ LYS A 305 C15 RET A 401 1555 1555 1.34 LINK NZ LYS B 305 C15 RET B 402 1555 1555 1.32 CISPEP 1 PHE A 89 PRO A 90 0 -2.56 CISPEP 2 PHE B 89 PRO B 90 0 0.34 CRYST1 122.390 122.390 158.770 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008171 0.004717 0.000000 0.00000 SCALE2 0.000000 0.009435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006298 0.00000