HEADER TRANSCRIPTION 10-NOV-14 4WW9 TITLE CRYSTAL STRUCTURE OF BINARY COMPLEX BUD32-CGI121 IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EKC/KEOPS COMPLEX SUBUNIT BUD32; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATYPICAL SERINE/THREONINE PROTEIN KINASE BUD32,BUD SITE COMPND 5 SELECTION PROTEIN 32,LOW-DYE-BINDING PROTEIN 14,PID261,BUD32; COMPND 6 EC: 3.6.-.-,2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: EKC/KEOPS COMPLEX SUBUNIT CGI121; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: CGI-121 HOMOLOG,CGI121; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: BUD32, LDB14, YGR262C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 559292; SOURCE 13 STRAIN: ATCC 204508 / S288C; SOURCE 14 GENE: CGI121, YML036W; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KEOPS, BINARY COMPLEX, BUD32-CGI121, TRNA T6A, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,H.VAN TILBEURGH REVDAT 4 01-MAY-24 4WW9 1 REMARK REVDAT 3 26-AUG-15 4WW9 1 REVDAT 2 15-APR-15 4WW9 1 JRNL REVDAT 1 18-MAR-15 4WW9 0 JRNL AUTH W.ZHANG,B.COLLINET,M.GRAILLE,M.C.DAUGERON,N.LAZAR,D.LIBRI, JRNL AUTH 2 D.DURAND,H.VAN TILBEURGH JRNL TITL CRYSTAL STRUCTURES OF THE GON7/PCC1 AND BUD32/CGI121 JRNL TITL 2 COMPLEXES PROVIDE A MODEL FOR THE COMPLETE YEAST KEOPS JRNL TITL 3 COMPLEX. JRNL REF NUCLEIC ACIDS RES. V. 43 3358 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 25735745 JRNL DOI 10.1093/NAR/GKV155 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7429 - 4.6984 1.00 2739 143 0.1844 0.1864 REMARK 3 2 4.6984 - 3.7306 1.00 2709 142 0.1579 0.1897 REMARK 3 3 3.7306 - 3.2594 1.00 2692 142 0.1738 0.2232 REMARK 3 4 3.2594 - 2.9615 1.00 2685 142 0.1872 0.1999 REMARK 3 5 2.9615 - 2.7493 1.00 2662 140 0.1959 0.2243 REMARK 3 6 2.7493 - 2.5873 1.00 2686 141 0.1862 0.2355 REMARK 3 7 2.5873 - 2.4577 1.00 2665 140 0.1828 0.1925 REMARK 3 8 2.4577 - 2.3508 1.00 2691 142 0.1783 0.2366 REMARK 3 9 2.3508 - 2.2603 1.00 2661 140 0.1727 0.2212 REMARK 3 10 2.2603 - 2.1823 1.00 2703 142 0.1673 0.1948 REMARK 3 11 2.1823 - 2.1141 1.00 2645 139 0.1772 0.2331 REMARK 3 12 2.1141 - 2.0537 1.00 2676 141 0.1785 0.2199 REMARK 3 13 2.0537 - 1.9996 1.00 2665 141 0.1736 0.2531 REMARK 3 14 1.9996 - 1.9508 0.99 2628 138 0.1754 0.1984 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 50.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.07860 REMARK 3 B22 (A**2) : -4.07860 REMARK 3 B33 (A**2) : 8.15710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3328 REMARK 3 ANGLE : 0.991 4523 REMARK 3 CHIRALITY : 0.072 516 REMARK 3 PLANARITY : 0.004 565 REMARK 3 DIHEDRAL : 15.854 1185 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6-5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2012 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.951 REMARK 200 RESOLUTION RANGE LOW (A) : 35.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.340 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 25.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: METHANOCALDOCOCCUS JANNASCHII BUD32/CGI121 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.8, 2.0 M REMARK 280 AMMONIUM SULFATE, 0.1 M NACL, 10 MM TRIS-HCL PH 7.5 AND 5 MM ATP, REMARK 280 PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.50500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 56.50500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.17500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.58750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.50500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.76250 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.50500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.17500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 56.50500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.76250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 56.50500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 21.58750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 ALA A 26 REMARK 465 GLU A 27 REMARK 465 PRO A 56 REMARK 465 LYS A 57 REMARK 465 ARG A 58 REMARK 465 TYR A 59 REMARK 465 ARG A 60 REMARK 465 HIS A 61 REMARK 465 PRO A 62 REMARK 465 GLN A 63 REMARK 465 ILE A 64 REMARK 465 ASP A 65 REMARK 465 GLN A 66 REMARK 465 ALA A 67 REMARK 465 LEU A 68 REMARK 465 THR A 69 REMARK 465 LYS A 70 REMARK 465 HIS A 71 REMARK 465 LEU A 260 REMARK 465 GLY A 261 REMARK 465 SER B 36 REMARK 465 THR B 37 REMARK 465 GLY B 180 REMARK 465 VAL B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 PHE A 5 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 6 CD1 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLN A 24 CG CD OE1 NE2 REMARK 470 ILE A 29 CD1 REMARK 470 ARG A 41 NE CZ NH1 NH2 REMARK 470 GLN A 47 CG CD OE1 NE2 REMARK 470 ARG A 54 NE CZ NH1 NH2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 74 CG CD1 CD2 REMARK 470 ARG A 78 NE CZ NH1 NH2 REMARK 470 LYS A 82 NZ REMARK 470 LYS A 123 NZ REMARK 470 ARG A 171 CZ NH1 NH2 REMARK 470 ARG A 175 CD NE CZ NH1 NH2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 GLN A 232 OE1 NE2 REMARK 470 LYS A 235 CD CE NZ REMARK 470 LYS A 238 CE NZ REMARK 470 LYS A 239 CE NZ REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 245 CE NZ REMARK 470 GLU A 249 CD OE1 OE2 REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 256 CD CE NZ REMARK 470 LYS B 26 CE NZ REMARK 470 LYS B 31 CD CE NZ REMARK 470 SER B 33 OG REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 ARG B 45 CZ NH1 NH2 REMARK 470 LYS B 65 CD CE NZ REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 112 CG OD1 ND2 REMARK 470 THR B 113 OG1 CG2 REMARK 470 ASP B 114 CG OD1 OD2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 GLN B 120 CG CD OE1 NE2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 LYS B 155 CE NZ REMARK 470 LYS B 161 NZ REMARK 470 GLN B 163 CG CD OE1 NE2 REMARK 470 ARG B 179 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 14 162.24 68.59 REMARK 500 TYR A 38 -20.01 -153.56 REMARK 500 ALA A 42 -0.21 74.28 REMARK 500 SER A 120 46.14 -78.75 REMARK 500 ASP A 132 69.02 -150.93 REMARK 500 ASP A 161 52.04 -158.70 REMARK 500 ASP A 182 73.82 62.95 REMARK 500 GLU B 34 9.32 114.52 REMARK 500 ASN B 67 -114.17 -126.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 405 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD1 REMARK 620 2 ASP A 182 OD2 46.4 REMARK 620 3 ADP A 302 O3B 87.8 74.1 REMARK 620 4 ADP A 302 O5' 146.0 99.7 78.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 DBREF 4WW9 A 1 261 UNP P53323 BUD32_YEAST 1 261 DBREF 4WW9 B 1 181 UNP Q03705 CG121_YEAST 1 181 SEQADV 4WW9 HIS B 182 UNP Q03705 EXPRESSION TAG SEQADV 4WW9 HIS B 183 UNP Q03705 EXPRESSION TAG SEQADV 4WW9 HIS B 184 UNP Q03705 EXPRESSION TAG SEQADV 4WW9 HIS B 185 UNP Q03705 EXPRESSION TAG SEQADV 4WW9 HIS B 186 UNP Q03705 EXPRESSION TAG SEQADV 4WW9 HIS B 187 UNP Q03705 EXPRESSION TAG SEQRES 1 A 261 MET THR GLN GLU PHE ILE ASP LYS VAL SER SER TYR LEU SEQRES 2 A 261 THR PRO ASP VAL ASP ILE ALA PRO ILE SER GLN GLY ALA SEQRES 3 A 261 GLU ALA ILE VAL PHE THR THR THR THR HIS PRO TYR LEU SEQRES 4 A 261 PRO ARG ALA LYS ASP SER HIS GLN LYS TYR ILE ILE LYS SEQRES 5 A 261 TYR ARG PRO PRO LYS ARG TYR ARG HIS PRO GLN ILE ASP SEQRES 6 A 261 GLN ALA LEU THR LYS HIS ARG THR LEU ASN GLU SER ARG SEQRES 7 A 261 LEU LEU ALA LYS LEU TYR LEU ILE PRO GLY LEU CYS VAL SEQRES 8 A 261 PRO GLN LEU ILE ALA CYS ASP PRO TYR ASN GLY PHE ILE SEQRES 9 A 261 TRP LEU GLU PHE LEU GLY GLU ASP LEU PRO GLY GLY HIS SEQRES 10 A 261 GLY PHE SER ASN LEU LYS ASN PHE LEU TRP MET HIS ASP SEQRES 11 A 261 GLN ASP PRO TYR SER ASP LEU VAL ALA THR THR LEU ARG SEQRES 12 A 261 LYS VAL GLY ARG GLN ILE GLY LEU LEU HIS TRP ASN ASP SEQRES 13 A 261 TYR CYS HIS GLY ASP LEU THR SER SER ASN ILE VAL LEU SEQRES 14 A 261 VAL ARG ASP GLY ALA ARG TRP THR PRO HIS LEU ILE ASP SEQRES 15 A 261 PHE GLY LEU GLY SER VAL SER ASN LEU VAL GLU ASP LYS SEQRES 16 A 261 GLY VAL ASP LEU TYR VAL LEU GLU ARG ALA ILE LEU SER SEQRES 17 A 261 THR HIS SER LYS HIS ALA GLU LYS TYR ASN ALA TRP ILE SEQRES 18 A 261 MET GLU GLY PHE GLU GLU VAL TYR ARG GLU GLN GLY ALA SEQRES 19 A 261 LYS GLY ALA LYS LYS LEU LYS GLU VAL THR LYS ARG PHE SEQRES 20 A 261 GLU GLU VAL ARG LEU ARG GLY ARG LYS ARG SER MET LEU SEQRES 21 A 261 GLY SEQRES 1 B 187 MET VAL VAL SER ILE ILE PRO GLN PHE PRO ASP ILE LYS SEQRES 2 B 187 VAL SER LEU ALA LEU PHE GLU GLN VAL LYS ASN ALA LYS SEQRES 3 B 187 GLU ILE ARG SER LYS MET SER GLU LEU SER THR SER PHE SEQRES 4 B 187 ALA PHE ILE ASP PRO ARG LEU VAL CYS SER GLY GLU GLN SEQRES 5 B 187 MET TYR SER ALA ILE TYR LYS THR LEU ILE GLU VAL LYS SEQRES 6 B 187 TYR ASN LYS MET ARG THR ARG ASN LEU ASN SER GLU CYS SEQRES 7 B 187 VAL LEU CYS LEU SER PRO THR SER ASN ILE SER ASP ALA SEQRES 8 B 187 PHE LEU LYS PHE GLY ILE LYS ASP ASP SER SER GLN LEU SEQRES 9 B 187 ILE CYS LEU LYS PHE HIS THR ASN THR ASP ASP VAL ASP SEQRES 10 B 187 LYS GLU GLN LEU ARG THR ILE MET THR SER ILE VAL LYS SEQRES 11 B 187 GLY GLN GLU ILE GLU PHE ASN ASP ASP ASN LEU SER ARG SEQRES 12 B 187 PHE TYR ASP GLU ALA LEU ILE ARG LYS ILE TYR LYS LEU SEQRES 13 B 187 SER ASP ASP PHE LYS PRO GLN ASP VAL ASN GLY LEU SER SEQRES 14 B 187 ARG ALA LEU VAL ASP ALA ILE GLN LEU ARG GLY VAL HIS SEQRES 15 B 187 HIS HIS HIS HIS HIS HET MG A 301 1 HET ADP A 302 27 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET ACT A 306 7 HET ACT A 307 7 HET SO4 B 201 5 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 3 MG MG 2+ FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 SO4 4(O4 S 2-) FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 11 HOH *280(H2 O) HELIX 1 AA1 GLU A 4 THR A 14 1 11 HELIX 2 AA2 THR A 73 LEU A 85 1 13 HELIX 3 AA3 PRO A 114 HIS A 117 5 4 HELIX 4 AA4 ASN A 121 ASP A 130 1 10 HELIX 5 AA5 SER A 135 ASN A 155 1 21 HELIX 6 AA6 LEU A 191 SER A 208 1 18 HELIX 7 AA7 HIS A 213 GLU A 231 1 19 HELIX 8 AA8 GLN A 232 GLY A 254 1 23 HELIX 9 AA9 ASN B 24 MET B 32 1 9 HELIX 10 AB1 ASP B 43 VAL B 47 5 5 HELIX 11 AB2 SER B 49 ASN B 67 1 19 HELIX 12 AB3 ASN B 73 SER B 83 1 11 HELIX 13 AB4 ASN B 87 GLY B 96 1 10 HELIX 14 AB5 ASP B 117 VAL B 129 1 13 HELIX 15 AB6 ASN B 137 TYR B 145 1 9 HELIX 16 AB7 ASP B 146 TYR B 154 1 9 HELIX 17 AB8 ASP B 164 LEU B 178 1 15 SHEET 1 AA1 5 ALA A 20 SER A 23 0 SHEET 2 AA1 5 ILE A 29 THR A 33 -1 O VAL A 30 N ILE A 22 SHEET 3 AA1 5 TYR A 49 TYR A 53 -1 O TYR A 53 N ILE A 29 SHEET 4 AA1 5 PHE A 103 GLU A 107 -1 O LEU A 106 N ILE A 50 SHEET 5 AA1 5 LEU A 94 ASP A 98 -1 N ASP A 98 O PHE A 103 SHEET 1 AA2 2 ASP A 112 LEU A 113 0 SHEET 2 AA2 2 GLY A 118 PHE A 119 -1 O GLY A 118 N LEU A 113 SHEET 1 AA3 2 TYR A 157 CYS A 158 0 SHEET 2 AA3 2 SER A 187 VAL A 188 -1 O SER A 187 N CYS A 158 SHEET 1 AA4 2 ILE A 167 ASP A 172 0 SHEET 2 AA4 2 ARG A 175 LEU A 180 -1 O ARG A 175 N ASP A 172 SHEET 1 AA5 4 VAL B 2 ILE B 6 0 SHEET 2 AA5 4 PHE B 9 GLU B 20 -1 O VAL B 14 N SER B 4 SHEET 3 AA5 4 LEU B 104 HIS B 110 -1 O HIS B 110 N LYS B 13 SHEET 4 AA5 4 ALA B 40 ILE B 42 -1 N ILE B 42 O ILE B 105 SHEET 1 AA6 3 VAL B 2 ILE B 6 0 SHEET 2 AA6 3 PHE B 9 GLU B 20 -1 O VAL B 14 N SER B 4 SHEET 3 AA6 3 GLN B 132 ILE B 134 -1 O GLN B 132 N GLU B 20 LINK OD1 ASP A 182 MG MG A 301 1555 1555 2.42 LINK OD2 ASP A 182 MG MG A 301 1555 1555 3.00 LINK MG MG A 301 O3B ADP A 302 1555 1555 1.99 LINK MG MG A 301 O5' ADP A 302 1555 1555 2.94 SITE 1 AC1 3 LYS A 52 ASP A 182 ADP A 302 SITE 1 AC2 11 SER A 23 ILE A 50 LYS A 52 GLU A 107 SITE 2 AC2 11 LEU A 109 ASP A 182 MG A 301 HOH A 431 SITE 3 AC2 11 HOH A 456 HOH A 510 HOH A 549 SITE 1 AC3 5 ARG A 143 LYS A 216 TRP A 220 GLU A 223 SITE 2 AC3 5 MET A 259 SITE 1 AC4 4 PHE A 125 HIS A 129 LEU A 137 TRP A 176 SITE 1 AC5 5 SER A 135 ASP A 136 ARG A 253 ARG A 257 SITE 2 AC5 5 HOH A 416 SITE 1 AC6 6 LEU A 199 LEU A 202 GLU A 203 ASN A 218 SITE 2 AC6 6 ILE A 221 HOH A 527 SITE 1 AC7 4 LEU A 191 VAL A 192 GLU A 193 ARG A 246 SITE 1 AC8 6 LYS B 68 ILE B 134 GLU B 135 ASN B 140 SITE 2 AC8 6 HOH B 303 HOH B 399 CRYST1 113.010 113.010 86.350 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008849 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011581 0.00000