HEADER TRANSFERASE 13-NOV-14 4WX9 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS OGT IN COMPLEX WITH TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*TP*GP*(E1X)P*CP*TP*AP*GP*TP*A)-3'); COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3'); COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE; COMPND 11 CHAIN: A, B, C; COMPND 12 SYNONYM: 6-O-METHYLGUANINE-DNA METHYLTRANSFERASE,MGMT,O-6- COMPND 13 METHYLGUANINE-DNA-ALKYLTRANSFERASE; COMPND 14 EC: 2.1.1.63; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 11 ORGANISM_TAXID: 83332; SOURCE 12 STRAIN: ATCC 25618 / H37RV; SOURCE 13 GENE: OGT, RV1316C, MTCY130.01C; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DIRECT DNA DAMAGE REVERSAL, ALKYLATED DNA-PROTEIN ALKYLTRANSFERASE, KEYWDS 2 PROTEIN-DNA COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.MIGGIANO,F.ROSSI,S.GARAVAGLIA,M.RIZZI REVDAT 4 10-JAN-24 4WX9 1 REMARK REVDAT 3 13-JAN-16 4WX9 1 JRNL REVDAT 2 11-NOV-15 4WX9 1 JRNL REVDAT 1 04-NOV-15 4WX9 0 JRNL AUTH R.MIGGIANO,G.PERUGINO,M.CIARAMELLA,M.SERPE,D.REJMAN,O.PAV, JRNL AUTH 2 R.POHL,S.GARAVAGLIA,S.LAHIRI,M.RIZZI,F.ROSSI JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 O6-METHYLGUANINE-DNA METHYLTRANSFERASE PROTEIN CLUSTERS JRNL TITL 3 ASSEMBLED ON TO DAMAGED DNA. JRNL REF BIOCHEM.J. V. 473 123 2016 JRNL REFN ESSN 1470-8728 JRNL PMID 26512127 JRNL DOI 10.1042/BJ20150833 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 628 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 884 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3725 REMARK 3 NUCLEIC ACID ATOMS : 532 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.12000 REMARK 3 B22 (A**2) : 5.73000 REMARK 3 B33 (A**2) : -2.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.477 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.448 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.378 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4408 ; 0.009 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 3927 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6092 ; 1.371 ; 1.859 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9027 ; 0.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 6.784 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;33.239 ;22.959 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;15.994 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;20.304 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 655 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4682 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1013 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1952 ; 2.825 ; 5.670 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1951 ; 2.825 ; 5.669 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2433 ; 4.578 ; 8.499 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2434 ; 4.578 ; 8.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2456 ; 3.458 ; 6.613 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2456 ; 3.458 ; 6.613 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3660 ; 5.665 ; 9.836 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5208 ; 8.218 ;52.979 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5209 ; 8.217 ;52.981 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12278 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 82.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.88900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BHB, 1T39 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 22% PEG 3350, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.74050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.54650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.45250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.54650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.74050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.45250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -43.48100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 51.45250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.54650 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 21.74050 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -51.45250 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -65.22150 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -102.90500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -68.54650 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -21.74050 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -51.45250 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -65.22150 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -102.90500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 68.54650 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -43.48100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -51.45250 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 68.54650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 33 REMARK 465 GLU A 34 REMARK 465 PRO A 35 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C11 E1X D 7 SG CYS A 126 2.11 REMARK 500 O ILE A 87 NH1 ARG A 128 2.15 REMARK 500 N1 DG D 1 O2 DC E 26 2.16 REMARK 500 O4 DT D 12 N6 DA E 15 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 123.73 -36.08 REMARK 500 ARG A 37 53.16 -117.68 REMARK 500 ILE A 122 -63.93 70.76 REMARK 500 THR A 137 -4.59 64.79 REMARK 500 GLU B 30 74.68 53.22 REMARK 500 TYR B 33 63.43 60.09 REMARK 500 PRO B 105 139.60 -37.26 REMARK 500 ILE B 122 -65.12 70.06 REMARK 500 PRO B 158 117.43 -38.77 REMARK 500 ASP B 160 -36.91 -39.27 REMARK 500 LEU B 161 -62.52 -101.51 REMARK 500 THR B 162 -32.73 -38.11 REMARK 500 TYR C 33 73.33 65.67 REMARK 500 ARG C 37 51.61 -97.57 REMARK 500 ALA C 107 31.62 -91.46 REMARK 500 SER C 133 -15.08 -47.06 REMARK 500 ASP C 160 2.16 -69.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE C 120 ALA C 121 -149.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 DBREF 4WX9 D 1 13 PDB 4WX9 4WX9 1 13 DBREF 4WX9 E 14 26 PDB 4WX9 4WX9 14 26 DBREF 4WX9 A 1 165 UNP P9WJW5 OGT_MYCTU 1 165 DBREF 4WX9 B 1 165 UNP P9WJW5 OGT_MYCTU 1 165 DBREF 4WX9 C 1 165 UNP P9WJW5 OGT_MYCTU 1 165 SEQADV 4WX9 VAL A 2 UNP P9WJW5 ILE 2 ENGINEERED MUTATION SEQADV 4WX9 VAL B 2 UNP P9WJW5 ILE 2 ENGINEERED MUTATION SEQADV 4WX9 VAL C 2 UNP P9WJW5 ILE 2 ENGINEERED MUTATION SEQRES 1 D 13 DG DC DC DA DT DG E1X DC DT DA DG DT DA SEQRES 1 E 13 DT DA DC DT DA DG DC DC DA DT DG DG DC SEQRES 1 A 165 MET VAL HIS TYR ARG THR ILE ASP SER PRO ILE GLY PRO SEQRES 2 A 165 LEU THR LEU ALA GLY HIS GLY SER VAL LEU THR ASN LEU SEQRES 3 A 165 ARG MET LEU GLU GLN THR TYR GLU PRO SER ARG THR HIS SEQRES 4 A 165 TRP THR PRO ASP PRO GLY ALA PHE SER GLY ALA VAL ASP SEQRES 5 A 165 GLN LEU ASN ALA TYR PHE ALA GLY GLU LEU THR GLU PHE SEQRES 6 A 165 ASP VAL GLU LEU ASP LEU ARG GLY THR ASP PHE GLN GLN SEQRES 7 A 165 ARG VAL TRP LYS ALA LEU LEU THR ILE PRO TYR GLY GLU SEQRES 8 A 165 THR ARG SER TYR GLY GLU ILE ALA ASP GLN ILE GLY ALA SEQRES 9 A 165 PRO GLY ALA ALA ARG ALA VAL GLY LEU ALA ASN GLY HIS SEQRES 10 A 165 ASN PRO ILE ALA ILE ILE VAL PRO CYS HIS ARG VAL ILE SEQRES 11 A 165 GLY ALA SER GLY LYS LEU THR GLY TYR GLY GLY GLY ILE SEQRES 12 A 165 ASN ARG LYS ARG ALA LEU LEU GLU LEU GLU LYS SER ARG SEQRES 13 A 165 ALA PRO ALA ASP LEU THR LEU PHE ASP SEQRES 1 B 165 MET VAL HIS TYR ARG THR ILE ASP SER PRO ILE GLY PRO SEQRES 2 B 165 LEU THR LEU ALA GLY HIS GLY SER VAL LEU THR ASN LEU SEQRES 3 B 165 ARG MET LEU GLU GLN THR TYR GLU PRO SER ARG THR HIS SEQRES 4 B 165 TRP THR PRO ASP PRO GLY ALA PHE SER GLY ALA VAL ASP SEQRES 5 B 165 GLN LEU ASN ALA TYR PHE ALA GLY GLU LEU THR GLU PHE SEQRES 6 B 165 ASP VAL GLU LEU ASP LEU ARG GLY THR ASP PHE GLN GLN SEQRES 7 B 165 ARG VAL TRP LYS ALA LEU LEU THR ILE PRO TYR GLY GLU SEQRES 8 B 165 THR ARG SER TYR GLY GLU ILE ALA ASP GLN ILE GLY ALA SEQRES 9 B 165 PRO GLY ALA ALA ARG ALA VAL GLY LEU ALA ASN GLY HIS SEQRES 10 B 165 ASN PRO ILE ALA ILE ILE VAL PRO CYS HIS ARG VAL ILE SEQRES 11 B 165 GLY ALA SER GLY LYS LEU THR GLY TYR GLY GLY GLY ILE SEQRES 12 B 165 ASN ARG LYS ARG ALA LEU LEU GLU LEU GLU LYS SER ARG SEQRES 13 B 165 ALA PRO ALA ASP LEU THR LEU PHE ASP SEQRES 1 C 165 MET VAL HIS TYR ARG THR ILE ASP SER PRO ILE GLY PRO SEQRES 2 C 165 LEU THR LEU ALA GLY HIS GLY SER VAL LEU THR ASN LEU SEQRES 3 C 165 ARG MET LEU GLU GLN THR TYR GLU PRO SER ARG THR HIS SEQRES 4 C 165 TRP THR PRO ASP PRO GLY ALA PHE SER GLY ALA VAL ASP SEQRES 5 C 165 GLN LEU ASN ALA TYR PHE ALA GLY GLU LEU THR GLU PHE SEQRES 6 C 165 ASP VAL GLU LEU ASP LEU ARG GLY THR ASP PHE GLN GLN SEQRES 7 C 165 ARG VAL TRP LYS ALA LEU LEU THR ILE PRO TYR GLY GLU SEQRES 8 C 165 THR ARG SER TYR GLY GLU ILE ALA ASP GLN ILE GLY ALA SEQRES 9 C 165 PRO GLY ALA ALA ARG ALA VAL GLY LEU ALA ASN GLY HIS SEQRES 10 C 165 ASN PRO ILE ALA ILE ILE VAL PRO CYS HIS ARG VAL ILE SEQRES 11 C 165 GLY ALA SER GLY LYS LEU THR GLY TYR GLY GLY GLY ILE SEQRES 12 C 165 ASN ARG LYS ARG ALA LEU LEU GLU LEU GLU LYS SER ARG SEQRES 13 C 165 ALA PRO ALA ASP LEU THR LEU PHE ASP HET E1X D 7 24 HET GOL A 201 6 HETNAM E1X PHOSPHORIC ACID MONO-[5-(1-ETHYL-2,6-DIOXO-1,2,3,6- HETNAM 2 E1X TETRAHYDRO-PURIN-9-YL)-3-HYDROXY-TETRAHYDRO-FURAN-2- HETNAM 3 E1X YLMETHYL]ESTER HETNAM GOL GLYCEROL HETSYN E1X N1-ETHYL-2'-DEOXYXANTHOSINE 5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 E1X C12 H17 N4 O8 P FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *8(H2 O) HELIX 1 AA1 PHE A 47 GLY A 60 1 14 HELIX 2 AA2 THR A 74 LEU A 85 1 12 HELIX 3 AA3 TYR A 95 ILE A 102 1 8 HELIX 4 AA4 ALA A 107 HIS A 117 1 11 HELIX 5 AA5 PRO A 125 HIS A 127 5 3 HELIX 6 AA6 GLY A 142 ARG A 156 1 15 HELIX 7 AA7 ALA A 159 ASP A 165 5 7 HELIX 8 AA8 PHE B 47 ALA B 59 1 13 HELIX 9 AA9 THR B 74 ILE B 87 1 14 HELIX 10 AB1 TYR B 95 ILE B 102 1 8 HELIX 11 AB2 ARG B 109 HIS B 117 1 9 HELIX 12 AB3 PRO B 125 HIS B 127 5 3 HELIX 13 AB4 GLY B 142 SER B 155 1 14 HELIX 14 AB5 PRO B 158 LEU B 163 1 6 HELIX 15 AB6 PHE C 47 ALA C 59 1 13 HELIX 16 AB7 THR C 74 LEU C 85 1 12 HELIX 17 AB8 TYR C 95 ILE C 102 1 8 HELIX 18 AB9 ALA C 107 HIS C 117 1 11 HELIX 19 AC1 PRO C 125 HIS C 127 5 3 HELIX 20 AC2 GLY C 142 ARG C 156 1 15 SHEET 1 AA1 5 THR A 41 PRO A 42 0 SHEET 2 AA1 5 HIS A 3 ILE A 7 1 N TYR A 4 O THR A 41 SHEET 3 AA1 5 LEU A 14 HIS A 19 -1 O LEU A 16 N ARG A 5 SHEET 4 AA1 5 VAL A 22 MET A 28 -1 O ARG A 27 N THR A 15 SHEET 5 AA1 5 GLU A 68 LEU A 69 1 O GLU A 68 N LEU A 23 SHEET 1 AA2 2 ARG A 93 SER A 94 0 SHEET 2 AA2 2 VAL A 129 ILE A 130 1 O ILE A 130 N ARG A 93 SHEET 1 AA3 4 VAL B 22 MET B 28 0 SHEET 2 AA3 4 LEU B 14 HIS B 19 -1 N ALA B 17 O THR B 24 SHEET 3 AA3 4 HIS B 3 ILE B 7 -1 N ARG B 5 O LEU B 16 SHEET 4 AA3 4 THR B 41 PRO B 42 1 O THR B 41 N TYR B 4 SHEET 1 AA4 2 ARG B 93 SER B 94 0 SHEET 2 AA4 2 VAL B 129 ILE B 130 1 O ILE B 130 N ARG B 93 SHEET 1 AA5 4 VAL C 22 ARG C 27 0 SHEET 2 AA5 4 LEU C 14 HIS C 19 -1 N ALA C 17 O ASN C 25 SHEET 3 AA5 4 HIS C 3 ILE C 7 -1 N ILE C 7 O LEU C 14 SHEET 4 AA5 4 THR C 41 PRO C 42 1 O THR C 41 N TYR C 4 SHEET 1 AA6 2 ARG C 93 SER C 94 0 SHEET 2 AA6 2 VAL C 129 ILE C 130 1 O ILE C 130 N ARG C 93 LINK O3' DG D 6 P E1X D 7 1555 1555 1.60 LINK O3' E1X D 7 P DC D 8 1555 1555 1.58 SITE 1 AC1 5 PHE A 65 ASP A 66 VAL A 67 LEU A 69 SITE 2 AC1 5 LEU A 85 CRYST1 43.481 102.905 137.093 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007294 0.00000