HEADER PROTEIN BINDING 14-NOV-14 4WXS TITLE CRYSTAL STRUCTURE OF THE E396D SNP VARIANT OF THE MYOCILIN TITLE 2 OLFACTOMEDIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOCILIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYOCILIN 55 KDA SUBUNIT,TRABECULAR MESHWORK-INDUCED COMPND 5 GLUCOCORTICOID RESPONSE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYOC, GLC1A, TIGR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA PROPELLER, 5 BLADED PROPELLER, OLFACTOMEDIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.K.DONEGAN,D.M.FREEMAN,R.L.LIEBERMAN REVDAT 1 01-APR-15 4WXS 0 JRNL AUTH R.K.DONEGAN,S.E.HILL,D.M.FREEMAN,E.NGUYEN,S.D.ORWIG, JRNL AUTH 2 K.C.TURNAGE,R.L.LIEBERMAN JRNL TITL STRUCTURAL BASIS FOR MISFOLDING IN MYOCILIN-ASSOCIATED JRNL TITL 2 GLAUCOMA. JRNL REF HUM.MOL.GENET. V. 24 2111 2015 JRNL REFN ESSN 1460-2083 JRNL PMID 25524706 JRNL DOI 10.1093/HMG/DDU730 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.580 REMARK 3 FREE R VALUE TEST SET COUNT : 3812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.4570 - 5.1224 0.90 1811 191 0.1972 0.1961 REMARK 3 2 5.1224 - 4.0802 0.91 1799 181 0.1330 0.1886 REMARK 3 3 4.0802 - 3.5687 0.90 1800 196 0.1379 0.1869 REMARK 3 4 3.5687 - 3.2443 0.91 1793 179 0.1338 0.1798 REMARK 3 5 3.2443 - 3.0129 0.90 1795 196 0.1600 0.1864 REMARK 3 6 3.0129 - 2.8359 0.91 1807 186 0.1584 0.1977 REMARK 3 7 2.8359 - 2.6943 0.90 1808 196 0.1745 0.2266 REMARK 3 8 2.6943 - 2.5774 0.91 1803 182 0.1860 0.2611 REMARK 3 9 2.5774 - 2.4784 0.90 1797 201 0.1844 0.2444 REMARK 3 10 2.4784 - 2.3931 0.91 1803 183 0.1842 0.2408 REMARK 3 11 2.3931 - 2.3184 0.90 1782 190 0.1852 0.2291 REMARK 3 12 2.3184 - 2.2522 0.90 1810 196 0.1883 0.2112 REMARK 3 13 2.2522 - 2.1930 0.90 1790 191 0.1879 0.2495 REMARK 3 14 2.1930 - 2.1396 0.90 1781 187 0.1947 0.2167 REMARK 3 15 2.1396 - 2.0910 0.90 1813 192 0.1973 0.2178 REMARK 3 16 2.0910 - 2.0466 0.91 1830 181 0.2035 0.2297 REMARK 3 17 2.0466 - 2.0057 0.90 1771 189 0.2088 0.2129 REMARK 3 18 2.0057 - 1.9679 0.90 1788 190 0.2100 0.2429 REMARK 3 19 1.9679 - 1.9328 0.91 1833 186 0.2213 0.2496 REMARK 3 20 1.9328 - 1.9001 0.90 1771 192 0.2283 0.2599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2161 REMARK 3 ANGLE : 0.766 2933 REMARK 3 CHIRALITY : 0.028 321 REMARK 3 PLANARITY : 0.003 366 REMARK 3 DIHEDRAL : 14.100 790 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MAR CCD 300 - NOT LISTED AS AN REMARK 200 OPTION REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 130265 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000 CAPSO PEG 400, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.72000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.72000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.44000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.32500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.72000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.44000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.32500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 819 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 826 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 228 REMARK 465 LYS A 229 REMARK 465 GLU A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 SER A 233 REMARK 465 GLY A 234 REMARK 465 TYR A 235 REMARK 465 LEU A 236 REMARK 465 ARG A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 GLU A 240 REMARK 465 GLY A 241 REMARK 465 ASP A 242 REMARK 465 THR A 243 REMARK 465 LYS A 503 REMARK 465 MET A 504 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 770 O HOH A 816 1.80 REMARK 500 O HOH A 902 O HOH A 915 1.85 REMARK 500 O HOH A 979 O HOH A 980 1.87 REMARK 500 O HOH A 800 O HOH A 819 1.88 REMARK 500 O HOH A 998 O HOH A 1003 1.90 REMARK 500 O HOH A 984 O HOH A 985 1.91 REMARK 500 OE2 GLU A 357 O HOH A 701 1.93 REMARK 500 NH1 ARG A 320 O HOH A 701 1.95 REMARK 500 O HOH A 953 O HOH A 966 1.96 REMARK 500 O HOH A 802 O HOH A 815 2.00 REMARK 500 O HOH A 705 O HOH A 762 2.01 REMARK 500 O HOH A 752 O HOH A 792 2.02 REMARK 500 OH TYR A 267 O HOH A 950 2.04 REMARK 500 O HOH A 818 O HOH A 986 2.06 REMARK 500 OE1 GLN A 415 O HOH A 982 2.07 REMARK 500 ND2 ASN A 469 O HOH A 948 2.08 REMARK 500 O HOH A 999 O HOH A 1000 2.09 REMARK 500 NE2 GLN A 424 O HOH A 702 2.12 REMARK 500 O VAL A 329 O3 GOL A 603 2.14 REMARK 500 O HOH A 975 O HOH A 988 2.14 REMARK 500 NE ARG A 258 O HOH A 923 2.14 REMARK 500 O HOH A 823 O HOH A 826 2.14 REMARK 500 O HOH A 969 O HOH A 1001 2.16 REMARK 500 O HOH A 815 O HOH A 925 2.17 REMARK 500 O7 P6G A 606 O HOH A 970 2.18 REMARK 500 O HOH A 935 O HOH A 940 2.18 REMARK 500 O HOH A 904 O HOH A 912 2.19 REMARK 500 O HOH A 961 O HOH A 991 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 723 O HOH A 737 8544 1.87 REMARK 500 O HOH A 776 O HOH A 804 4555 1.94 REMARK 500 O HOH A 760 O HOH A 792 8544 2.01 REMARK 500 O HOH A 805 O HOH A 809 3555 2.03 REMARK 500 O HOH A 810 O HOH A 812 3455 2.04 REMARK 500 O HOH A 703 O HOH A 706 4555 2.08 REMARK 500 O HOH A 744 O HOH A 791 8444 2.10 REMARK 500 O HOH A 732 O HOH A 773 6445 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 245 -153.68 -91.44 REMARK 500 SER A 324 -151.55 58.58 REMARK 500 THR A 377 33.14 -89.67 REMARK 500 TYR A 473 85.30 -164.15 REMARK 500 LEU A 492 -11.44 80.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 606 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 607 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 326 O REMARK 620 2 ASP A 380 OD1 96.8 REMARK 620 3 LEU A 381 O 90.1 80.9 REMARK 620 4 ASP A 478 OD1 163.4 88.6 106.2 REMARK 620 5 ASP A 478 OD2 129.8 132.7 89.7 49.7 REMARK 620 6 HOH A 832 O 89.9 107.0 172.0 73.5 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 380 OD1 REMARK 620 2 ASP A 380 OD2 46.0 REMARK 620 3 ASN A 428 OD1 110.8 80.0 REMARK 620 4 ALA A 429 O 121.3 85.3 83.4 REMARK 620 5 ILE A 477 O 150.8 160.8 82.5 85.1 REMARK 620 6 ASP A 478 OD1 81.4 126.6 138.6 125.1 72.4 REMARK 620 7 HOH A 836 O 78.0 101.5 74.5 155.2 81.0 69.5 REMARK 620 8 HOH A 833 O 68.2 80.3 151.1 74.1 112.7 70.3 130.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WXQ RELATED DB: PDB REMARK 900 4WXQ IS THE WILD TYPE STRUCTURE OF THIS PROTEIN DOMAIN. REMARK 900 RELATED ID: 4WXU RELATED DB: PDB DBREF 4WXS A 228 504 UNP Q99972 MYOC_HUMAN 228 504 SEQADV 4WXS ASP A 396 UNP Q99972 GLU 396 ENGINEERED MUTATION SEQRES 1 A 277 LEU LYS GLU SER PRO SER GLY TYR LEU ARG SER GLY GLU SEQRES 2 A 277 GLY ASP THR GLY CYS GLY GLU LEU VAL TRP VAL GLY GLU SEQRES 3 A 277 PRO LEU THR LEU ARG THR ALA GLU THR ILE THR GLY LYS SEQRES 4 A 277 TYR GLY VAL TRP MET ARG ASP PRO LYS PRO THR TYR PRO SEQRES 5 A 277 TYR THR GLN GLU THR THR TRP ARG ILE ASP THR VAL GLY SEQRES 6 A 277 THR ASP VAL ARG GLN VAL PHE GLU TYR ASP LEU ILE SER SEQRES 7 A 277 GLN PHE MET GLN GLY TYR PRO SER LYS VAL HIS ILE LEU SEQRES 8 A 277 PRO ARG PRO LEU GLU SER THR GLY ALA VAL VAL TYR SER SEQRES 9 A 277 GLY SER LEU TYR PHE GLN GLY ALA GLU SER ARG THR VAL SEQRES 10 A 277 ILE ARG TYR GLU LEU ASN THR GLU THR VAL LYS ALA GLU SEQRES 11 A 277 LYS GLU ILE PRO GLY ALA GLY TYR HIS GLY GLN PHE PRO SEQRES 12 A 277 TYR SER TRP GLY GLY TYR THR ASP ILE ASP LEU ALA VAL SEQRES 13 A 277 ASP GLU ALA GLY LEU TRP VAL ILE TYR SER THR ASP ASP SEQRES 14 A 277 ALA LYS GLY ALA ILE VAL LEU SER LYS LEU ASN PRO GLU SEQRES 15 A 277 ASN LEU GLU LEU GLU GLN THR TRP GLU THR ASN ILE ARG SEQRES 16 A 277 LYS GLN SER VAL ALA ASN ALA PHE ILE ILE CYS GLY THR SEQRES 17 A 277 LEU TYR THR VAL SER SER TYR THR SER ALA ASP ALA THR SEQRES 18 A 277 VAL ASN PHE ALA TYR ASP THR GLY THR GLY ILE SER LYS SEQRES 19 A 277 THR LEU THR ILE PRO PHE LYS ASN ARG TYR LYS TYR SER SEQRES 20 A 277 SER MET ILE ASP TYR ASN PRO LEU GLU LYS LYS LEU PHE SEQRES 21 A 277 ALA TRP ASP ASN LEU ASN MET VAL THR TYR ASP ILE LYS SEQRES 22 A 277 LEU SER LYS MET HET CA A 601 1 HET GOL A 602 14 HET GOL A 603 14 HET GOL A 604 14 HET PG4 A 605 31 HET P6G A 606 16 HET NA A 607 1 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 CA CA 2+ FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 PG4 C8 H18 O5 FORMUL 7 P6G C12 H26 O7 FORMUL 8 NA NA 1+ FORMUL 9 HOH *304(H2 O) HELIX 1 AA1 THR A 262 LYS A 266 5 5 HELIX 2 AA2 LEU A 303 GLY A 310 1 8 HELIX 3 AA3 GLN A 424 VAL A 426 5 3 SHEET 1 AA1 2 LEU A 248 VAL A 251 0 SHEET 2 AA1 2 ILE A 499 LEU A 501 -1 O LYS A 500 N VAL A 249 SHEET 1 AA2 4 LEU A 255 THR A 259 0 SHEET 2 AA2 4 ASN A 493 TYR A 497 -1 O MET A 494 N ARG A 258 SHEET 3 AA2 4 LYS A 485 ASP A 490 -1 N ASP A 490 O ASN A 493 SHEET 4 AA2 4 SER A 474 ASN A 480 -1 N ASP A 478 O PHE A 487 SHEET 1 AA3 4 GLY A 268 ARG A 272 0 SHEET 2 AA3 4 THR A 285 ASP A 289 -1 O TRP A 286 N MET A 271 SHEET 3 AA3 4 VAL A 295 TYR A 301 -1 O PHE A 299 N ARG A 287 SHEET 4 AA3 4 LYS A 314 LEU A 322 -1 O LEU A 318 N ARG A 296 SHEET 1 AA4 4 VAL A 328 TYR A 330 0 SHEET 2 AA4 4 SER A 333 GLN A 337 -1 O TYR A 335 N VAL A 328 SHEET 3 AA4 4 THR A 343 GLU A 348 -1 O ILE A 345 N PHE A 336 SHEET 4 AA4 4 VAL A 354 GLU A 359 -1 O ALA A 356 N ARG A 346 SHEET 1 AA5 4 ASP A 380 ASP A 384 0 SHEET 2 AA5 4 GLY A 387 TYR A 392 -1 O TRP A 389 N ALA A 382 SHEET 3 AA5 4 ALA A 400 LEU A 406 -1 O VAL A 402 N TYR A 392 SHEET 4 AA5 4 LEU A 413 ARG A 422 -1 O GLU A 414 N LYS A 405 SHEET 1 AA6 4 ASN A 428 ILE A 432 0 SHEET 2 AA6 4 THR A 435 SER A 441 -1 O TYR A 437 N PHE A 430 SHEET 3 AA6 4 ASP A 446 ASP A 454 -1 O TYR A 453 N LEU A 436 SHEET 4 AA6 4 SER A 460 LYS A 468 -1 O ILE A 465 N VAL A 449 SSBOND 1 CYS A 245 CYS A 433 1555 1555 2.03 LINK O GLY A 326 NA NA A 607 1555 1555 2.56 LINK OD1 ASP A 380 CA CA A 601 1555 1555 3.02 LINK OD1 ASP A 380 NA NA A 607 1555 1555 2.36 LINK OD2 ASP A 380 CA CA A 601 1555 1555 2.39 LINK O LEU A 381 NA NA A 607 1555 1555 2.35 LINK OD1 ASN A 428 CA CA A 601 1555 1555 2.46 LINK O ALA A 429 CA CA A 601 1555 1555 2.38 LINK O ILE A 477 CA CA A 601 1555 1555 2.50 LINK OD1 ASP A 478 CA CA A 601 1555 1555 2.40 LINK OD1 ASP A 478 NA NA A 607 1555 1555 2.73 LINK OD2 ASP A 478 NA NA A 607 1555 1555 2.44 LINK CA CA A 601 O HOH A 836 1555 1555 2.49 LINK CA CA A 601 O HOH A 833 1555 1555 2.57 LINK NA NA A 607 O HOH A 832 1555 1555 2.37 CISPEP 1 TYR A 278 PRO A 279 0 5.04 SITE 1 AC1 7 ASP A 380 ASN A 428 ALA A 429 ILE A 477 SITE 2 AC1 7 ASP A 478 HOH A 833 HOH A 836 SITE 1 AC2 10 TRP A 373 SER A 441 SER A 444 ASN A 469 SITE 2 AC2 10 LYS A 472 TYR A 473 SER A 474 HOH A 944 SITE 3 AC2 10 HOH A 948 HOH A 963 SITE 1 AC3 11 MET A 271 ARG A 272 PRO A 274 VAL A 328 SITE 2 AC3 11 VAL A 329 ASP A 478 ASN A 480 PHE A 487 SITE 3 AC3 11 HOH A 898 HOH A 899 HOH A 959 SITE 1 AC4 7 LYS A 314 VAL A 315 HIS A 316 ILE A 317 SITE 2 AC4 7 GLU A 352 TYR A 442 HOH A 848 SITE 1 AC5 7 TRP A 250 SER A 372 GLN A 424 LYS A 500 SITE 2 AC5 7 HOH A 733 HOH A 742 HOH A 791 SITE 1 AC6 7 PRO A 274 LYS A 275 TYR A 330 ASP A 384 SITE 2 AC6 7 GLU A 385 PRO A 481 HOH A 970 SITE 1 AC7 5 GLY A 326 ASP A 380 LEU A 381 ASP A 478 SITE 2 AC7 5 HOH A 832 CRYST1 68.880 86.650 87.440 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011436 0.00000