HEADER VIRAL PROTEIN 17-NOV-14 4WYJ TITLE ADENOVIRUS 3 HEAD DOMAIN MUTANT V239D COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SPIKE,PROTEIN IV; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS B SEROTYPE 3; SOURCE 3 ORGANISM_COMMON: HADV-3; SOURCE 4 ORGANISM_TAXID: 45659; SOURCE 5 GENE: L5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOVIRUS HEAD DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LIEBER,C.ZUBIETA,P.FENDER REVDAT 2 27-SEP-23 4WYJ 1 SOURCE JRNL REMARK REVDAT 1 01-JUL-15 4WYJ 0 JRNL AUTH M.RICHTER,R.YUMUL,H.WANG,K.SAYDAMINOVA,M.HO,D.MAY, JRNL AUTH 2 A.BALDESSARI,M.GOUGH,C.DRESCHER,N.URBAN,S.ROFFLER,C.ZUBIETA, JRNL AUTH 3 D.CARTER,P.FENDER,A.LIEBER JRNL TITL PRECLINICAL SAFETY AND EFFICACY STUDIES WITH AN JRNL TITL 2 AFFINITY-ENHANCED EPITHELIAL JUNCTION OPENER AND PEGYLATED JRNL TITL 3 LIPOSOMAL DOXORUBICIN. JRNL REF MOL THER METHODS CLIN DEV V. 2 15005 2015 JRNL REFN ESSN 2329-0501 JRNL PMID 26029716 JRNL DOI 10.1038/MTM.2015.5 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 30618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2704 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2439 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2571 REMARK 3 BIN R VALUE (WORKING SET) : 0.2419 REMARK 3 BIN FREE R VALUE : 0.2835 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.32460 REMARK 3 B22 (A**2) : 6.32460 REMARK 3 B33 (A**2) : -12.64910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.368 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.317 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.216 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.297 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.214 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4590 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6256 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1507 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 113 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 649 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4590 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 612 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4919 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.17 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -7.5222 24.3603 6.0716 REMARK 3 T TENSOR REMARK 3 T11: 0.0215 T22: -0.0807 REMARK 3 T33: -0.2787 T12: -0.0075 REMARK 3 T13: 0.0307 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.7705 L22: 2.4507 REMARK 3 L33: 1.5857 L12: -0.4505 REMARK 3 L13: -0.5742 L23: 0.6262 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.5636 S13: -0.0372 REMARK 3 S21: -0.6290 S22: 0.0309 S23: 0.0028 REMARK 3 S31: -0.1241 S32: 0.2199 S33: -0.0418 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -7.1592 44.8708 25.2657 REMARK 3 T TENSOR REMARK 3 T11: -0.1499 T22: -0.2982 REMARK 3 T33: -0.0087 T12: -0.0079 REMARK 3 T13: 0.0089 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 4.7113 L22: 2.1848 REMARK 3 L33: 2.9233 L12: -0.4993 REMARK 3 L13: 1.7644 L23: -0.2735 REMARK 3 S TENSOR REMARK 3 S11: -0.1555 S12: -0.4773 S13: 0.9845 REMARK 3 S21: -0.1705 S22: 0.0672 S23: -0.1599 REMARK 3 S31: -0.4394 S32: -0.0511 S33: 0.0883 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.2054 26.7535 24.0282 REMARK 3 T TENSOR REMARK 3 T11: -0.2762 T22: -0.0668 REMARK 3 T33: 0.0051 T12: 0.0056 REMARK 3 T13: 0.0297 T23: -0.0791 REMARK 3 L TENSOR REMARK 3 L11: 2.8666 L22: 2.8410 REMARK 3 L33: 2.6726 L12: 0.7027 REMARK 3 L13: 0.7929 L23: 1.1162 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: 0.1170 S13: -0.0899 REMARK 3 S21: 0.0478 S22: 0.1876 S23: -0.7133 REMARK 3 S31: 0.1335 S32: 0.5680 S33: -0.2550 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 44.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H7Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75M MAGNESIUM SULFATE, 0.1M TAPS, PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.46950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 68.78300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 68.78300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.23475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 68.78300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 68.78300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.70425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 68.78300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.78300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.23475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 68.78300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.78300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.70425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.46950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -161.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 126 REMARK 465 ALA A 127 REMARK 465 LEU A 128 REMARK 465 GLN A 220 REMARK 465 THR A 221 REMARK 465 MET B 126 REMARK 465 ALA B 127 REMARK 465 LEU B 128 REMARK 465 GLN B 220 REMARK 465 THR B 221 REMARK 465 MET C 126 REMARK 465 ALA C 127 REMARK 465 LEU C 128 REMARK 465 GLN C 220 REMARK 465 THR C 221 REMARK 465 ALA C 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 ASP A 223 CG OD1 OD2 REMARK 470 PHE B 224 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 275 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 138 73.53 -151.02 REMARK 500 ASN A 163 89.69 -150.36 REMARK 500 PHE A 184 22.32 -78.92 REMARK 500 TYR A 218 -72.08 -93.73 REMARK 500 LEU A 273 -93.92 75.44 REMARK 500 LYS B 138 74.81 -151.61 REMARK 500 PHE B 184 21.14 -77.92 REMARK 500 ASN B 274 63.13 34.72 REMARK 500 ASN C 130 19.97 56.75 REMARK 500 LYS C 138 75.07 -152.10 REMARK 500 PHE C 184 21.69 -77.76 REMARK 500 ALA C 243 127.27 18.28 REMARK 500 ASN C 274 -117.71 54.48 REMARK 500 LYS C 275 -51.99 68.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 555 DISTANCE = 8.02 ANGSTROMS REMARK 525 HOH A 557 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A 565 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH A 580 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH A 581 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH A 582 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 548 DISTANCE = 9.43 ANGSTROMS REMARK 525 HOH B 571 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH B 575 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH B 576 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 577 DISTANCE = 9.75 ANGSTROMS REMARK 525 HOH C 525 DISTANCE = 17.37 ANGSTROMS REMARK 525 HOH C 533 DISTANCE = 12.43 ANGSTROMS REMARK 525 HOH C 559 DISTANCE = 6.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 404 DBREF 4WYJ A 127 319 UNP P04501 SPIKE_ADE03 127 319 DBREF 4WYJ B 127 319 UNP P04501 SPIKE_ADE03 127 319 DBREF 4WYJ C 127 319 UNP P04501 SPIKE_ADE03 127 319 SEQADV 4WYJ MET A 126 UNP P04501 INITIATING METHIONINE SEQADV 4WYJ ASP A 239 UNP P04501 VAL 239 ENGINEERED MUTATION SEQADV 4WYJ MET B 126 UNP P04501 INITIATING METHIONINE SEQADV 4WYJ ASP B 239 UNP P04501 VAL 239 ENGINEERED MUTATION SEQADV 4WYJ MET C 126 UNP P04501 INITIATING METHIONINE SEQADV 4WYJ ASP C 239 UNP P04501 VAL 239 ENGINEERED MUTATION SEQRES 1 A 194 MET ALA LEU LYS ASN ASN THR LEU TRP THR GLY PRO LYS SEQRES 2 A 194 PRO GLU ALA ASN CYS ILE ILE GLU TYR GLY LYS GLN ASN SEQRES 3 A 194 PRO ASP SER LYS LEU THR LEU ILE LEU VAL LYS ASN GLY SEQRES 4 A 194 GLY ILE VAL ASN GLY TYR VAL THR LEU MET GLY ALA SER SEQRES 5 A 194 ASP TYR VAL ASN THR LEU PHE LYS ASN LYS ASN VAL SER SEQRES 6 A 194 ILE ASN VAL GLU LEU TYR PHE ASP ALA THR GLY HIS ILE SEQRES 7 A 194 LEU PRO ASP SER SER SER LEU LYS THR ASP LEU GLU LEU SEQRES 8 A 194 LYS TYR LYS GLN THR ALA ASP PHE SER ALA ARG GLY PHE SEQRES 9 A 194 MET PRO SER THR THR ALA TYR PRO PHE ASP LEU PRO ASN SEQRES 10 A 194 ALA GLY THR HIS ASN GLU ASN TYR ILE PHE GLY GLN CYS SEQRES 11 A 194 TYR TYR LYS ALA SER ASP GLY ALA LEU PHE PRO LEU GLU SEQRES 12 A 194 VAL THR VAL MET LEU ASN LYS ARG LEU PRO ASP SER ARG SEQRES 13 A 194 THR SER TYR VAL MET THR PHE LEU TRP SER LEU ASN ALA SEQRES 14 A 194 GLY LEU ALA PRO GLU THR THR GLN ALA THR LEU ILE THR SEQRES 15 A 194 SER PRO PHE THR PHE SER TYR ILE ARG GLU ASP ASP SEQRES 1 B 194 MET ALA LEU LYS ASN ASN THR LEU TRP THR GLY PRO LYS SEQRES 2 B 194 PRO GLU ALA ASN CYS ILE ILE GLU TYR GLY LYS GLN ASN SEQRES 3 B 194 PRO ASP SER LYS LEU THR LEU ILE LEU VAL LYS ASN GLY SEQRES 4 B 194 GLY ILE VAL ASN GLY TYR VAL THR LEU MET GLY ALA SER SEQRES 5 B 194 ASP TYR VAL ASN THR LEU PHE LYS ASN LYS ASN VAL SER SEQRES 6 B 194 ILE ASN VAL GLU LEU TYR PHE ASP ALA THR GLY HIS ILE SEQRES 7 B 194 LEU PRO ASP SER SER SER LEU LYS THR ASP LEU GLU LEU SEQRES 8 B 194 LYS TYR LYS GLN THR ALA ASP PHE SER ALA ARG GLY PHE SEQRES 9 B 194 MET PRO SER THR THR ALA TYR PRO PHE ASP LEU PRO ASN SEQRES 10 B 194 ALA GLY THR HIS ASN GLU ASN TYR ILE PHE GLY GLN CYS SEQRES 11 B 194 TYR TYR LYS ALA SER ASP GLY ALA LEU PHE PRO LEU GLU SEQRES 12 B 194 VAL THR VAL MET LEU ASN LYS ARG LEU PRO ASP SER ARG SEQRES 13 B 194 THR SER TYR VAL MET THR PHE LEU TRP SER LEU ASN ALA SEQRES 14 B 194 GLY LEU ALA PRO GLU THR THR GLN ALA THR LEU ILE THR SEQRES 15 B 194 SER PRO PHE THR PHE SER TYR ILE ARG GLU ASP ASP SEQRES 1 C 194 MET ALA LEU LYS ASN ASN THR LEU TRP THR GLY PRO LYS SEQRES 2 C 194 PRO GLU ALA ASN CYS ILE ILE GLU TYR GLY LYS GLN ASN SEQRES 3 C 194 PRO ASP SER LYS LEU THR LEU ILE LEU VAL LYS ASN GLY SEQRES 4 C 194 GLY ILE VAL ASN GLY TYR VAL THR LEU MET GLY ALA SER SEQRES 5 C 194 ASP TYR VAL ASN THR LEU PHE LYS ASN LYS ASN VAL SER SEQRES 6 C 194 ILE ASN VAL GLU LEU TYR PHE ASP ALA THR GLY HIS ILE SEQRES 7 C 194 LEU PRO ASP SER SER SER LEU LYS THR ASP LEU GLU LEU SEQRES 8 C 194 LYS TYR LYS GLN THR ALA ASP PHE SER ALA ARG GLY PHE SEQRES 9 C 194 MET PRO SER THR THR ALA TYR PRO PHE ASP LEU PRO ASN SEQRES 10 C 194 ALA GLY THR HIS ASN GLU ASN TYR ILE PHE GLY GLN CYS SEQRES 11 C 194 TYR TYR LYS ALA SER ASP GLY ALA LEU PHE PRO LEU GLU SEQRES 12 C 194 VAL THR VAL MET LEU ASN LYS ARG LEU PRO ASP SER ARG SEQRES 13 C 194 THR SER TYR VAL MET THR PHE LEU TRP SER LEU ASN ALA SEQRES 14 C 194 GLY LEU ALA PRO GLU THR THR GLN ALA THR LEU ILE THR SEQRES 15 C 194 SER PRO PHE THR PHE SER TYR ILE ARG GLU ASP ASP HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 C 401 5 HET SO4 C 402 5 HET SO4 C 403 5 HET SO4 C 404 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 10(O4 S 2-) FORMUL 14 HOH *245(H2 O) HELIX 1 AA1 TYR A 179 ASN A 186 5 8 HELIX 2 AA2 ALA A 226 MET A 230 5 5 HELIX 3 AA3 HIS A 246 TYR A 250 5 5 HELIX 4 AA4 TYR B 179 ASN B 186 5 8 HELIX 5 AA5 ALA B 226 MET B 230 5 5 HELIX 6 AA6 HIS B 246 GLU B 248 5 3 HELIX 7 AA7 TYR C 179 ASN C 186 5 8 HELIX 8 AA8 ALA C 226 MET C 230 5 5 HELIX 9 AA9 HIS C 246 GLU C 248 5 3 SHEET 1 AA1 5 GLU A 215 LEU A 216 0 SHEET 2 AA1 5 THR A 132 TRP A 134 -1 N TRP A 134 O GLU A 215 SHEET 3 AA1 5 SER A 154 ASN A 163 -1 O LEU A 160 N LEU A 133 SHEET 4 AA1 5 ILE A 166 GLY A 175 -1 O ASN A 168 N VAL A 161 SHEET 5 AA1 5 PHE A 310 ILE A 315 -1 O PHE A 312 N GLY A 169 SHEET 1 AA2 4 ASN A 188 PHE A 197 0 SHEET 2 AA2 4 TYR A 284 ASN A 293 -1 O LEU A 292 N VAL A 189 SHEET 3 AA2 4 LEU A 264 VAL A 271 -1 N GLU A 268 O SER A 291 SHEET 4 AA2 4 ILE A 251 LYS A 258 -1 N CYS A 255 O LEU A 267 SHEET 1 AA3 5 GLU B 215 LEU B 216 0 SHEET 2 AA3 5 THR B 132 TRP B 134 -1 N TRP B 134 O GLU B 215 SHEET 3 AA3 5 SER B 154 ASN B 163 -1 O LEU B 160 N LEU B 133 SHEET 4 AA3 5 ILE B 166 GLY B 175 -1 O ASN B 168 N VAL B 161 SHEET 5 AA3 5 PHE B 310 ILE B 315 -1 O PHE B 312 N GLY B 169 SHEET 1 AA4 4 ASN B 188 PHE B 197 0 SHEET 2 AA4 4 TYR B 284 ASN B 293 -1 O LEU B 292 N VAL B 189 SHEET 3 AA4 4 LEU B 264 LEU B 273 -1 N GLU B 268 O SER B 291 SHEET 4 AA4 4 TYR B 250 LYS B 258 -1 N CYS B 255 O LEU B 267 SHEET 1 AA5 5 GLU C 215 LEU C 216 0 SHEET 2 AA5 5 THR C 132 TRP C 134 -1 N TRP C 134 O GLU C 215 SHEET 3 AA5 5 SER C 154 ASN C 163 -1 O LEU C 160 N LEU C 133 SHEET 4 AA5 5 ILE C 166 GLY C 175 -1 O MET C 174 N LYS C 155 SHEET 5 AA5 5 PHE C 310 ILE C 315 -1 O PHE C 312 N GLY C 169 SHEET 1 AA6 4 ASN C 188 PHE C 197 0 SHEET 2 AA6 4 TYR C 284 ASN C 293 -1 O LEU C 292 N VAL C 189 SHEET 3 AA6 4 LEU C 264 LEU C 273 -1 N GLU C 268 O SER C 291 SHEET 4 AA6 4 TYR C 250 LYS C 258 -1 N CYS C 255 O LEU C 267 SITE 1 AC1 3 LYS A 149 ASP A 178 TYR A 179 SITE 1 AC2 4 LYS A 185 THR A 301 GLN A 302 HOH A 538 SITE 1 AC3 3 LYS A 149 GLN A 150 ASN A 151 SITE 1 AC4 3 MET A 174 THR B 245 GLU B 248 SITE 1 AC5 4 LYS B 149 SER B 177 ASP B 178 TYR B 179 SITE 1 AC6 3 ILE B 145 ASN B 192 GLU B 194 SITE 1 AC7 4 LYS C 149 SER C 177 ASP C 178 TYR C 179 SITE 1 AC8 3 THR B 304 THR C 245 GLU C 248 SITE 1 AC9 3 LYS C 185 THR C 301 GLN C 302 SITE 1 AD1 5 ILE C 144 ILE C 145 ASN C 192 GLU C 194 SITE 2 AD1 5 HOH C 535 CRYST1 137.566 137.566 108.939 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007269 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007269 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009179 0.00000