HEADER TRANSFERASE 18-NOV-14 4WYW TITLE MUTANT K20E OF 3D POLYMERASE FROM FOOT-AND-MOUTH DISEASE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE 3D-POL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESDIUES 1830-2299; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THIS POLYMERASE CONTAIN THE MUTATION K20E SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: FMDV; SOURCE 4 ORGANISM_TAXID: 12120; SOURCE 5 STRAIN: ISOLATE -/SPAIN/S8C1SANTAPAU/1970 SEROTYPE C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CLOSED-RIGHT HAND RNA DEPENDENT RNA POLYMERASE PICORNAVIRUS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.FERRER-ORTA,N.VERDAGUER,I.DE LA HIGUERA,E.DOMINGO REVDAT 4 10-JAN-24 4WYW 1 REMARK REVDAT 3 17-JUN-15 4WYW 1 JRNL REVDAT 2 13-MAY-15 4WYW 1 JRNL REVDAT 1 06-MAY-15 4WYW 0 JRNL AUTH C.FERRER-ORTA,I.DE LA HIGUERA,F.CARIDI,M.T.SANCHEZ-APARICIO, JRNL AUTH 2 E.MORENO,C.PERALES,K.SINGH,S.G.SARAFIANOS,F.SOBRINO, JRNL AUTH 3 E.DOMINGO,N.VERDAGUER JRNL TITL MULTIFUNCTIONALITY OF A PICORNAVIRUS POLYMERASE DOMAIN: JRNL TITL 2 NUCLEAR LOCALIZATION SIGNAL AND NUCLEOTIDE RECOGNITION. JRNL REF J.VIROL. V. 89 6848 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25903341 JRNL DOI 10.1128/JVI.03283-14 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2368 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3908 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3650 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5303 ; 0.793 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8382 ; 0.657 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 4.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;32.037 ;23.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 625 ;10.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;10.155 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4447 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 930 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1931 ; 0.495 ; 2.564 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1930 ; 0.495 ; 2.563 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2417 ; 0.910 ; 3.846 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2418 ; 0.910 ; 3.847 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1977 ; 0.402 ; 2.650 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1976 ; 0.402 ; 2.650 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2884 ; 0.720 ; 3.951 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4562 ; 2.812 ;20.596 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4562 ; 2.812 ;20.596 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47356 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1U09 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.2M MG(CH3COO)2, 0.1M REMARK 280 MES PH6.0, 4% GAMMA-BUTYROLACTONE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.06500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.85000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.53250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.85000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.59750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.85000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.53250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.85000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.59750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.06500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 ARG A 12 NE CZ NH1 NH2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ARG A 127 CD NE CZ NH1 NH2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 LYS A 387 CD CE NZ REMARK 470 ARG A 417 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 422 CG CD OE1 OE2 REMARK 470 ARG A 440 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 33 48.51 -83.40 REMARK 500 GLU A 33 48.60 -83.49 REMARK 500 PHE A 261 44.82 -105.45 REMARK 500 GLU A 286 -121.53 55.48 REMARK 500 GLU A 286 -121.89 55.94 REMARK 500 LYS A 372 -61.38 78.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WNE RELATED DB: PDB REMARK 900 1WNE CONTAINS THE WILD TYPE PROTEIN WITH RNA SYMSUB REMARK 900 RELATED ID: 1U09 RELATED DB: PDB REMARK 900 1WNE CONTAINS THE WILD TYPE PROTEIN. DBREF 4WYW A 1 470 UNP P03311 POLG_FMDVS 1830 2299 SEQADV 4WYW GLU A 20 UNP P03311 LYS 1849 ENGINEERED MUTATION SEQADV 4WYW ALA A 471 UNP P03311 EXPRESSION TAG SEQADV 4WYW ALA A 472 UNP P03311 EXPRESSION TAG SEQADV 4WYW ALA A 473 UNP P03311 EXPRESSION TAG SEQADV 4WYW LEU A 474 UNP P03311 EXPRESSION TAG SEQADV 4WYW GLU A 475 UNP P03311 EXPRESSION TAG SEQADV 4WYW HIS A 476 UNP P03311 EXPRESSION TAG SEQADV 4WYW HIS A 477 UNP P03311 EXPRESSION TAG SEQADV 4WYW HIS A 478 UNP P03311 EXPRESSION TAG SEQADV 4WYW HIS A 479 UNP P03311 EXPRESSION TAG SEQADV 4WYW HIS A 480 UNP P03311 EXPRESSION TAG SEQADV 4WYW HIS A 481 UNP P03311 EXPRESSION TAG SEQRES 1 A 481 GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL SEQRES 2 A 481 HIS VAL MET ARG LYS THR GLU LEU ALA PRO THR VAL ALA SEQRES 3 A 481 HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU SEQRES 4 A 481 SER ASN LYS ASP PRO ARG LEU ASN GLU GLY VAL VAL LEU SEQRES 5 A 481 ASP GLU VAL ILE PHE SER LYS HIS LYS GLY ASP THR LYS SEQRES 6 A 481 MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA SEQRES 7 A 481 ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR SEQRES 8 A 481 ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY SEQRES 9 A 481 VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO SEQRES 10 A 481 GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA SEQRES 11 A 481 LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL SEQRES 12 A 481 GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS SEQRES 13 A 481 PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO SEQRES 14 A 481 MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP SEQRES 15 A 481 VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET SEQRES 16 A 481 ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY SEQRES 17 A 481 PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL SEQRES 18 A 481 ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG SEQRES 19 A 481 ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN SEQRES 20 A 481 HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL SEQRES 21 A 481 PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP SEQRES 22 A 481 ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU SEQRES 23 A 481 ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY SEQRES 24 A 481 CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN SEQRES 25 A 481 ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY SEQRES 26 A 481 VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP SEQRES 27 A 481 ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU SEQRES 28 A 481 ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE SEQRES 29 A 481 THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY SEQRES 30 A 481 HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE SEQRES 31 A 481 HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET SEQRES 32 A 481 ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG SEQRES 33 A 481 ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY SEQRES 34 A 481 LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU SEQRES 35 A 481 PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR SEQRES 36 A 481 ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY SEQRES 37 A 481 ASP ALA ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET 3PO A 501 13 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET ACT A 506 4 HETNAM 3PO TRIPHOSPHATE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 3PO H5 O10 P3 FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *281(H2 O) HELIX 1 AA1 THR A 24 ASN A 31 1 8 HELIX 2 AA2 VAL A 51 PHE A 57 1 7 HELIX 3 AA3 SER A 67 GLY A 90 1 24 HELIX 4 AA4 SER A 97 GLY A 104 1 8 HELIX 5 AA5 ARG A 127 LEU A 131 1 5 HELIX 6 AA6 GLY A 140 LYS A 152 1 13 HELIX 7 AA7 MET A 170 ALA A 175 1 6 HELIX 8 AA8 PRO A 185 ASN A 206 1 22 HELIX 9 AA9 ASN A 218 ALA A 231 1 14 HELIX 10 AB1 CYS A 249 PHE A 261 1 13 HELIX 11 AB2 ARG A 262 GLY A 266 5 5 HELIX 12 AB3 PRO A 269 THR A 277 1 9 HELIX 13 AB4 ALA A 302 TYR A 323 1 22 HELIX 14 AB5 LEU A 353 SER A 359 1 7 HELIX 15 AB6 SER A 379 ASP A 382 5 4 HELIX 16 AB7 ALA A 404 SER A 413 1 10 HELIX 17 AB8 THR A 419 VAL A 432 1 14 HELIX 18 AB9 GLY A 435 GLU A 444 1 10 HELIX 19 AC1 PRO A 445 GLN A 447 5 3 HELIX 20 AC2 SER A 454 CYS A 467 1 14 HELIX 21 AC3 CYS A 467 LEU A 474 1 8 SHEET 1 AA1 4 LEU A 2 VAL A 13 0 SHEET 2 AA1 4 ASN A 280 GLU A 293 -1 O GLU A 293 N LEU A 2 SHEET 3 AA1 4 CYS A 159 LEU A 163 1 N CYS A 159 O GLU A 282 SHEET 4 AA1 4 ILE A 180 VAL A 183 -1 O VAL A 181 N PHE A 162 SHEET 1 AA2 2 LEU A 21 PRO A 23 0 SHEET 2 AA2 2 PHE A 414 ARG A 416 -1 O ALA A 415 N ALA A 22 SHEET 1 AA3 2 PHE A 34 PRO A 36 0 SHEET 2 AA3 2 ILE A 167 PRO A 169 -1 O ARG A 168 N GLY A 35 SHEET 1 AA4 2 ILE A 132 ASP A 133 0 SHEET 2 AA4 2 THR A 138 VAL A 139 -1 O THR A 138 N ASP A 133 SHEET 1 AA5 4 THR A 332 TYR A 336 0 SHEET 2 AA5 4 ASP A 339 SER A 344 -1 O ALA A 343 N THR A 332 SHEET 3 AA5 4 ASN A 235 TYR A 241 -1 N TRP A 237 O VAL A 342 SHEET 4 AA5 4 ILE A 364 PRO A 366 -1 O THR A 365 N ASP A 240 SHEET 1 AA6 3 THR A 384 PHE A 385 0 SHEET 2 AA6 3 ARG A 388 MET A 392 -1 O ARG A 388 N PHE A 385 SHEET 3 AA6 3 TYR A 399 VAL A 402 -1 O VAL A 402 N HIS A 389 CISPEP 1 LEU A 119 PRO A 120 0 0.61 SITE 1 AC1 5 ARG A 168 LYS A 172 ARG A 179 ALA A 243 SITE 2 AC1 5 HOH A 737 SITE 1 AC2 3 TYR A 323 GLU A 324 TYR A 346 SITE 1 AC3 4 GLY A 129 LEU A 131 GLY A 140 HOH A 805 SITE 1 AC4 7 TRP A 237 ASP A 238 PRO A 366 ALA A 367 SITE 2 AC4 7 ASP A 368 PHE A 374 VAL A 375 SITE 1 AC5 10 TYR A 81 PRO A 209 ASN A 312 LEU A 328 SITE 2 AC5 10 TYR A 331 THR A 332 MET A 333 HOH A 727 SITE 3 AC5 10 HOH A 736 HOH A 774 SITE 1 AC6 5 MET A 111 GLU A 112 ARG A 128 ILE A 189 SITE 2 AC6 5 HOH A 844 CRYST1 91.700 91.700 118.130 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008465 0.00000