data_4WZ0 # _entry.id 4WZ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.319 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4WZ0 WWPDB D_1000204781 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'U-box 2 (wild-type)' 4WZ1 unspecified PDB 'U-box 2, Ile175Met mutant' 4WZ2 unspecified PDB 'U-box 1 in complex with UBE2D2' 4WZ3 unspecified TargetTrack . MCSG-APC108251 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4WZ0 _pdbx_database_status.recvd_initial_deposition_date 2014-11-18 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stogios, P.J.' 1 'Quaile, A.T.' 2 'Skarina, T.' 3 'Stein, A.' 4 'Di Leo, R.' 5 'Yim, V.' 6 'Savchenko, A.' 7 'Joachimiak, A.' 8 'Midwest Center for Structural Genomics (MCSG)' 9 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 23 _citation.language ? _citation.page_first 1459 _citation.page_last 1469 _citation.title 'Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2015.05.020 _citation.pdbx_database_id_PubMed 26146184 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Quaile, A.T.' 1 ? primary 'Urbanus, M.L.' 2 ? primary 'Stogios, P.J.' 3 ? primary 'Nocek, B.' 4 ? primary 'Skarina, T.' 5 ? primary 'Ensminger, A.W.' 6 ? primary 'Savchenko, A.' 7 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 4WZ0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 75.334 _cell.length_a_esd ? _cell.length_b 90.621 _cell.length_b_esd ? _cell.length_c 40.562 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase LubX' 12605.295 1 6.3.2.- ? 'residues 9-117' ? 2 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Legionella U-box protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;IDHKSKYLREAALEANLSHPETTPT(MSE)LT(CSD)PIDSGFLKDPVITPEGFVYNKSSILKWLETKKEDPQSRKPLTA KDLQPFPELLIIVNRFVETQTNYEKLKNRLVQNARVA ; _entity_poly.pdbx_seq_one_letter_code_can ;IDHKSKYLREAALEANLSHPETTPTMLTCPIDSGFLKDPVITPEGFVYNKSSILKWLETKKEDPQSRKPLTAKDLQPFPE LLIIVNRFVETQTNYEKLKNRLVQNARVA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC108251 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ASP n 1 3 HIS n 1 4 LYS n 1 5 SER n 1 6 LYS n 1 7 TYR n 1 8 LEU n 1 9 ARG n 1 10 GLU n 1 11 ALA n 1 12 ALA n 1 13 LEU n 1 14 GLU n 1 15 ALA n 1 16 ASN n 1 17 LEU n 1 18 SER n 1 19 HIS n 1 20 PRO n 1 21 GLU n 1 22 THR n 1 23 THR n 1 24 PRO n 1 25 THR n 1 26 MSE n 1 27 LEU n 1 28 THR n 1 29 CSD n 1 30 PRO n 1 31 ILE n 1 32 ASP n 1 33 SER n 1 34 GLY n 1 35 PHE n 1 36 LEU n 1 37 LYS n 1 38 ASP n 1 39 PRO n 1 40 VAL n 1 41 ILE n 1 42 THR n 1 43 PRO n 1 44 GLU n 1 45 GLY n 1 46 PHE n 1 47 VAL n 1 48 TYR n 1 49 ASN n 1 50 LYS n 1 51 SER n 1 52 SER n 1 53 ILE n 1 54 LEU n 1 55 LYS n 1 56 TRP n 1 57 LEU n 1 58 GLU n 1 59 THR n 1 60 LYS n 1 61 LYS n 1 62 GLU n 1 63 ASP n 1 64 PRO n 1 65 GLN n 1 66 SER n 1 67 ARG n 1 68 LYS n 1 69 PRO n 1 70 LEU n 1 71 THR n 1 72 ALA n 1 73 LYS n 1 74 ASP n 1 75 LEU n 1 76 GLN n 1 77 PRO n 1 78 PHE n 1 79 PRO n 1 80 GLU n 1 81 LEU n 1 82 LEU n 1 83 ILE n 1 84 ILE n 1 85 VAL n 1 86 ASN n 1 87 ARG n 1 88 PHE n 1 89 VAL n 1 90 GLU n 1 91 THR n 1 92 GLN n 1 93 THR n 1 94 ASN n 1 95 TYR n 1 96 GLU n 1 97 LYS n 1 98 LEU n 1 99 LYS n 1 100 ASN n 1 101 ARG n 1 102 LEU n 1 103 VAL n 1 104 GLN n 1 105 ASN n 1 106 ALA n 1 107 ARG n 1 108 VAL n 1 109 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 9 _entity_src_gen.pdbx_end_seq_num 109 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'lubX, lpp2887' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Paris _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Legionella pneumophila (strain Paris)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 297246 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant RIL _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name p15TV-LIC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LUBX_LEGPA _struct_ref.pdbx_db_accession Q5X159 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;REAALEANLSHPETTPTMLTCPIDSGFLKDPVITPEGFVYNKSSILKWLETKKEDPQSRKPLTAKDLQPFPELLIIVNRF VETQTNYEKLKNRLVQNARVA ; _struct_ref.pdbx_align_begin 17 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4WZ0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 9 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5X159 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 117 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 17 _struct_ref_seq.pdbx_auth_seq_align_end 117 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4WZ0 ILE A 1 ? UNP Q5X159 ? ? 'expression tag' 9 1 1 4WZ0 ASP A 2 ? UNP Q5X159 ? ? 'expression tag' 10 2 1 4WZ0 HIS A 3 ? UNP Q5X159 ? ? 'expression tag' 11 3 1 4WZ0 LYS A 4 ? UNP Q5X159 ? ? 'expression tag' 12 4 1 4WZ0 SER A 5 ? UNP Q5X159 ? ? 'expression tag' 13 5 1 4WZ0 LYS A 6 ? UNP Q5X159 ? ? 'expression tag' 14 6 1 4WZ0 TYR A 7 ? UNP Q5X159 ? ? 'expression tag' 15 7 1 4WZ0 LEU A 8 ? UNP Q5X159 ? ? 'expression tag' 16 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CSD 'L-peptide linking' n 3-SULFINOALANINE 'S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE' 'C3 H7 N O4 S' 153.157 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4WZ0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.77 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '~30 mg protein, 0.25 M ammonium sulfate, 0.1 M imidazole pH 7.8, 28% PEG 8K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-04-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792063 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792063 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4WZ0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 50.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10142 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.7 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.47 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 1.98 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.94 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 97.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.418 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4WZ0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.954 _refine.ls_d_res_low 45.310 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9941 _refine.ls_number_reflns_R_free 995 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.33 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2378 _refine.ls_R_factor_R_free 0.2781 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2335 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.21 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_R_Free_selection_details 'random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.10 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.29 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 883 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1026 _refine_hist.d_res_high 1.954 _refine_hist.d_res_low 45.310 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 936 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.168 ? 1278 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.490 ? 374 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.046 ? 146 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 165 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9540 2.0571 . . 135 1214 92.00 . . . 0.3628 . 0.2744 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0571 2.1859 . . 138 1247 95.00 . . . 0.2986 . 0.2490 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1859 2.3547 . . 136 1221 92.00 . . . 0.3465 . 0.2645 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3547 2.5917 . . 142 1276 97.00 . . . 0.3093 . 0.2438 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5917 2.9666 . . 144 1294 97.00 . . . 0.2530 . 0.2470 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9666 3.7373 . . 145 1309 97.00 . . . 0.2367 . 0.2137 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7373 45.3227 . . 155 1385 97.00 . . . 0.2694 . 0.2184 . . . . . . . . . . # _struct.entry_id 4WZ0 _struct.title 'Crystal structure of U-box 1 of LubX / LegU2 / Lpp2887 from Legionella pneumophila str. Paris' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase LubX' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4WZ0 _struct_keywords.text 'alpha/beta protein, effector, structural genomics, PSI-Biology, MCSG, Midwest Center for Structural Genomics, LIGASE' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 2 ? SER A 18 ? ASP A 10 SER A 26 1 ? 17 HELX_P HELX_P2 AA2 PRO A 24 ? THR A 28 ? PRO A 32 THR A 36 5 ? 5 HELX_P HELX_P3 AA3 LYS A 50 ? LYS A 60 ? LYS A 58 LYS A 68 1 ? 11 HELX_P HELX_P4 AA4 THR A 71 ? LEU A 75 ? THR A 79 LEU A 83 5 ? 5 HELX_P HELX_P5 AA5 GLU A 80 ? ALA A 109 ? GLU A 88 ALA A 117 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A THR 25 C ? ? ? 1_555 A MSE 26 N ? ? A THR 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 26 C ? ? ? 1_555 A LEU 27 N ? ? A MSE 34 A LEU 35 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale both ? A THR 28 C ? ? ? 1_555 A CSD 29 N ? ? A THR 36 A CSD 37 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale both ? A CSD 29 C ? ? ? 1_555 A PRO 30 N ? ? A CSD 37 A PRO 38 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 47 ? ASN A 49 ? VAL A 55 ASN A 57 AA1 2 PRO A 39 ? ILE A 41 ? PRO A 47 ILE A 49 AA1 3 GLN A 76 ? PRO A 77 ? GLN A 84 PRO A 85 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 48 ? O TYR A 56 N VAL A 40 ? N VAL A 48 AA1 2 3 N ILE A 41 ? N ILE A 49 O GLN A 76 ? O GLN A 84 # _atom_sites.entry_id 4WZ0 _atom_sites.fract_transf_matrix[1][1] 0.013274 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011035 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024654 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 9 9 ILE ILE A . n A 1 2 ASP 2 10 10 ASP ASP A . n A 1 3 HIS 3 11 11 HIS HIS A . n A 1 4 LYS 4 12 12 LYS LYS A . n A 1 5 SER 5 13 13 SER SER A . n A 1 6 LYS 6 14 14 LYS LYS A . n A 1 7 TYR 7 15 15 TYR TYR A . n A 1 8 LEU 8 16 16 LEU LEU A . n A 1 9 ARG 9 17 17 ARG ARG A . n A 1 10 GLU 10 18 18 GLU GLU A . n A 1 11 ALA 11 19 19 ALA ALA A . n A 1 12 ALA 12 20 20 ALA ALA A . n A 1 13 LEU 13 21 21 LEU LEU A . n A 1 14 GLU 14 22 22 GLU GLU A . n A 1 15 ALA 15 23 23 ALA ALA A . n A 1 16 ASN 16 24 24 ASN ASN A . n A 1 17 LEU 17 25 25 LEU LEU A . n A 1 18 SER 18 26 26 SER SER A . n A 1 19 HIS 19 27 27 HIS HIS A . n A 1 20 PRO 20 28 28 PRO PRO A . n A 1 21 GLU 21 29 29 GLU GLU A . n A 1 22 THR 22 30 30 THR THR A . n A 1 23 THR 23 31 31 THR THR A . n A 1 24 PRO 24 32 32 PRO PRO A . n A 1 25 THR 25 33 33 THR THR A . n A 1 26 MSE 26 34 34 MSE MSE A . n A 1 27 LEU 27 35 35 LEU LEU A . n A 1 28 THR 28 36 36 THR THR A . n A 1 29 CSD 29 37 37 CSD CSW A . n A 1 30 PRO 30 38 38 PRO PRO A . n A 1 31 ILE 31 39 39 ILE ILE A . n A 1 32 ASP 32 40 40 ASP ASP A . n A 1 33 SER 33 41 41 SER SER A . n A 1 34 GLY 34 42 42 GLY GLY A . n A 1 35 PHE 35 43 43 PHE PHE A . n A 1 36 LEU 36 44 44 LEU LEU A . n A 1 37 LYS 37 45 45 LYS LYS A . n A 1 38 ASP 38 46 46 ASP ASP A . n A 1 39 PRO 39 47 47 PRO PRO A . n A 1 40 VAL 40 48 48 VAL VAL A . n A 1 41 ILE 41 49 49 ILE ILE A . n A 1 42 THR 42 50 50 THR THR A . n A 1 43 PRO 43 51 51 PRO PRO A . n A 1 44 GLU 44 52 52 GLU GLU A . n A 1 45 GLY 45 53 53 GLY GLY A . n A 1 46 PHE 46 54 54 PHE PHE A . n A 1 47 VAL 47 55 55 VAL VAL A . n A 1 48 TYR 48 56 56 TYR TYR A . n A 1 49 ASN 49 57 57 ASN ASN A . n A 1 50 LYS 50 58 58 LYS LYS A . n A 1 51 SER 51 59 59 SER SER A . n A 1 52 SER 52 60 60 SER SER A . n A 1 53 ILE 53 61 61 ILE ILE A . n A 1 54 LEU 54 62 62 LEU LEU A . n A 1 55 LYS 55 63 63 LYS LYS A . n A 1 56 TRP 56 64 64 TRP TRP A . n A 1 57 LEU 57 65 65 LEU LEU A . n A 1 58 GLU 58 66 66 GLU GLU A . n A 1 59 THR 59 67 67 THR THR A . n A 1 60 LYS 60 68 68 LYS LYS A . n A 1 61 LYS 61 69 69 LYS LYS A . n A 1 62 GLU 62 70 70 GLU GLU A . n A 1 63 ASP 63 71 71 ASP ASP A . n A 1 64 PRO 64 72 72 PRO PRO A . n A 1 65 GLN 65 73 73 GLN GLN A . n A 1 66 SER 66 74 74 SER SER A . n A 1 67 ARG 67 75 75 ARG ARG A . n A 1 68 LYS 68 76 76 LYS LYS A . n A 1 69 PRO 69 77 77 PRO PRO A . n A 1 70 LEU 70 78 78 LEU LEU A . n A 1 71 THR 71 79 79 THR THR A . n A 1 72 ALA 72 80 80 ALA ALA A . n A 1 73 LYS 73 81 81 LYS LYS A . n A 1 74 ASP 74 82 82 ASP ASP A . n A 1 75 LEU 75 83 83 LEU LEU A . n A 1 76 GLN 76 84 84 GLN GLN A . n A 1 77 PRO 77 85 85 PRO PRO A . n A 1 78 PHE 78 86 86 PHE PHE A . n A 1 79 PRO 79 87 87 PRO PRO A . n A 1 80 GLU 80 88 88 GLU GLU A . n A 1 81 LEU 81 89 89 LEU LEU A . n A 1 82 LEU 82 90 90 LEU LEU A . n A 1 83 ILE 83 91 91 ILE ILE A . n A 1 84 ILE 84 92 92 ILE ILE A . n A 1 85 VAL 85 93 93 VAL VAL A . n A 1 86 ASN 86 94 94 ASN ASN A . n A 1 87 ARG 87 95 95 ARG ARG A . n A 1 88 PHE 88 96 96 PHE PHE A . n A 1 89 VAL 89 97 97 VAL VAL A . n A 1 90 GLU 90 98 98 GLU GLU A . n A 1 91 THR 91 99 99 THR THR A . n A 1 92 GLN 92 100 100 GLN GLN A . n A 1 93 THR 93 101 101 THR THR A . n A 1 94 ASN 94 102 102 ASN ASN A . n A 1 95 TYR 95 103 103 TYR TYR A . n A 1 96 GLU 96 104 104 GLU GLU A . n A 1 97 LYS 97 105 105 LYS LYS A . n A 1 98 LEU 98 106 106 LEU LEU A . n A 1 99 LYS 99 107 107 LYS LYS A . n A 1 100 ASN 100 108 108 ASN ASN A . n A 1 101 ARG 101 109 109 ARG ARG A . n A 1 102 LEU 102 110 110 LEU LEU A . n A 1 103 VAL 103 111 111 VAL VAL A . n A 1 104 GLN 104 112 112 GLN GLN A . n A 1 105 ASN 105 113 113 ASN ASN A . n A 1 106 ALA 106 114 114 ALA ALA A . n A 1 107 ARG 107 115 115 ARG ARG A . n A 1 108 VAL 108 116 116 VAL VAL A . n A 1 109 ALA 109 117 117 ALA ALA A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 157 HOH HOH A . B 2 HOH 2 302 163 HOH HOH A . B 2 HOH 3 303 129 HOH HOH A . B 2 HOH 4 304 10 HOH HOH A . B 2 HOH 5 305 89 HOH HOH A . B 2 HOH 6 306 164 HOH HOH A . B 2 HOH 7 307 117 HOH HOH A . B 2 HOH 8 308 99 HOH HOH A . B 2 HOH 9 309 104 HOH HOH A . B 2 HOH 10 310 5 HOH HOH A . B 2 HOH 11 311 116 HOH HOH A . B 2 HOH 12 312 80 HOH HOH A . B 2 HOH 13 313 13 HOH HOH A . B 2 HOH 14 314 114 HOH HOH A . B 2 HOH 15 315 102 HOH HOH A . B 2 HOH 16 316 27 HOH HOH A . B 2 HOH 17 317 60 HOH HOH A . B 2 HOH 18 318 119 HOH HOH A . B 2 HOH 19 319 96 HOH HOH A . B 2 HOH 20 320 97 HOH HOH A . B 2 HOH 21 321 92 HOH HOH A . B 2 HOH 22 322 141 HOH HOH A . B 2 HOH 23 323 165 HOH HOH A . B 2 HOH 24 324 3 HOH HOH A . B 2 HOH 25 325 2 HOH HOH A . B 2 HOH 26 326 101 HOH HOH A . B 2 HOH 27 327 34 HOH HOH A . B 2 HOH 28 328 78 HOH HOH A . B 2 HOH 29 329 158 HOH HOH A . B 2 HOH 30 330 168 HOH HOH A . B 2 HOH 31 331 11 HOH HOH A . B 2 HOH 32 332 146 HOH HOH A . B 2 HOH 33 333 23 HOH HOH A . B 2 HOH 34 334 120 HOH HOH A . B 2 HOH 35 335 16 HOH HOH A . B 2 HOH 36 336 64 HOH HOH A . B 2 HOH 37 337 173 HOH HOH A . B 2 HOH 38 338 52 HOH HOH A . B 2 HOH 39 339 25 HOH HOH A . B 2 HOH 40 340 67 HOH HOH A . B 2 HOH 41 341 88 HOH HOH A . B 2 HOH 42 342 37 HOH HOH A . B 2 HOH 43 343 66 HOH HOH A . B 2 HOH 44 344 109 HOH HOH A . B 2 HOH 45 345 156 HOH HOH A . B 2 HOH 46 346 39 HOH HOH A . B 2 HOH 47 347 47 HOH HOH A . B 2 HOH 48 348 126 HOH HOH A . B 2 HOH 49 349 176 HOH HOH A . B 2 HOH 50 350 179 HOH HOH A . B 2 HOH 51 351 50 HOH HOH A . B 2 HOH 52 352 125 HOH HOH A . B 2 HOH 53 353 130 HOH HOH A . B 2 HOH 54 354 180 HOH HOH A . B 2 HOH 55 355 87 HOH HOH A . B 2 HOH 56 356 145 HOH HOH A . B 2 HOH 57 357 149 HOH HOH A . B 2 HOH 58 358 51 HOH HOH A . B 2 HOH 59 359 76 HOH HOH A . B 2 HOH 60 360 54 HOH HOH A . B 2 HOH 61 361 169 HOH HOH A . B 2 HOH 62 362 161 HOH HOH A . B 2 HOH 63 363 1 HOH HOH A . B 2 HOH 64 364 4 HOH HOH A . B 2 HOH 65 365 7 HOH HOH A . B 2 HOH 66 366 8 HOH HOH A . B 2 HOH 67 367 9 HOH HOH A . B 2 HOH 68 368 12 HOH HOH A . B 2 HOH 69 369 14 HOH HOH A . B 2 HOH 70 370 18 HOH HOH A . B 2 HOH 71 371 19 HOH HOH A . B 2 HOH 72 372 20 HOH HOH A . B 2 HOH 73 373 21 HOH HOH A . B 2 HOH 74 374 22 HOH HOH A . B 2 HOH 75 375 24 HOH HOH A . B 2 HOH 76 376 26 HOH HOH A . B 2 HOH 77 377 28 HOH HOH A . B 2 HOH 78 378 29 HOH HOH A . B 2 HOH 79 379 30 HOH HOH A . B 2 HOH 80 380 31 HOH HOH A . B 2 HOH 81 381 32 HOH HOH A . B 2 HOH 82 382 33 HOH HOH A . B 2 HOH 83 383 35 HOH HOH A . B 2 HOH 84 384 36 HOH HOH A . B 2 HOH 85 385 42 HOH HOH A . B 2 HOH 86 386 43 HOH HOH A . B 2 HOH 87 387 45 HOH HOH A . B 2 HOH 88 388 46 HOH HOH A . B 2 HOH 89 389 49 HOH HOH A . B 2 HOH 90 390 55 HOH HOH A . B 2 HOH 91 391 56 HOH HOH A . B 2 HOH 92 392 57 HOH HOH A . B 2 HOH 93 393 58 HOH HOH A . B 2 HOH 94 394 61 HOH HOH A . B 2 HOH 95 395 63 HOH HOH A . B 2 HOH 96 396 65 HOH HOH A . B 2 HOH 97 397 69 HOH HOH A . B 2 HOH 98 398 72 HOH HOH A . B 2 HOH 99 399 73 HOH HOH A . B 2 HOH 100 400 74 HOH HOH A . B 2 HOH 101 401 75 HOH HOH A . B 2 HOH 102 402 79 HOH HOH A . B 2 HOH 103 403 81 HOH HOH A . B 2 HOH 104 404 82 HOH HOH A . B 2 HOH 105 405 83 HOH HOH A . B 2 HOH 106 406 85 HOH HOH A . B 2 HOH 107 407 86 HOH HOH A . B 2 HOH 108 408 90 HOH HOH A . B 2 HOH 109 409 91 HOH HOH A . B 2 HOH 110 410 94 HOH HOH A . B 2 HOH 111 411 98 HOH HOH A . B 2 HOH 112 412 103 HOH HOH A . B 2 HOH 113 413 106 HOH HOH A . B 2 HOH 114 414 107 HOH HOH A . B 2 HOH 115 415 108 HOH HOH A . B 2 HOH 116 416 110 HOH HOH A . B 2 HOH 117 417 111 HOH HOH A . B 2 HOH 118 418 112 HOH HOH A . B 2 HOH 119 419 121 HOH HOH A . B 2 HOH 120 420 122 HOH HOH A . B 2 HOH 121 421 124 HOH HOH A . B 2 HOH 122 422 127 HOH HOH A . B 2 HOH 123 423 128 HOH HOH A . B 2 HOH 124 424 131 HOH HOH A . B 2 HOH 125 425 132 HOH HOH A . B 2 HOH 126 426 135 HOH HOH A . B 2 HOH 127 427 136 HOH HOH A . B 2 HOH 128 428 138 HOH HOH A . B 2 HOH 129 429 139 HOH HOH A . B 2 HOH 130 430 143 HOH HOH A . B 2 HOH 131 431 150 HOH HOH A . B 2 HOH 132 432 151 HOH HOH A . B 2 HOH 133 433 154 HOH HOH A . B 2 HOH 134 434 155 HOH HOH A . B 2 HOH 135 435 159 HOH HOH A . B 2 HOH 136 436 166 HOH HOH A . B 2 HOH 137 437 167 HOH HOH A . B 2 HOH 138 438 170 HOH HOH A . B 2 HOH 139 439 171 HOH HOH A . B 2 HOH 140 440 172 HOH HOH A . B 2 HOH 141 441 174 HOH HOH A . B 2 HOH 142 442 177 HOH HOH A . B 2 HOH 143 443 178 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 26 A MSE 34 ? MET 'modified residue' 2 A CSD 29 A CSD 37 ? CYS 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-14 2 'Structure model' 1 1 2015-07-29 3 'Structure model' 1 2 2015-08-19 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2019-12-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' pdbx_audit_support 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_pdbx_audit_support.funding_organization' 3 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 5 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 61.0697 29.4945 15.8488 0.2127 ? 0.0018 ? 0.0262 ? 0.1681 ? 0.0309 ? 0.1895 ? 3.3847 ? 2.2284 ? 0.6008 ? 5.0354 ? 0.4695 ? 3.2633 ? 0.0494 ? -0.0346 ? -0.2639 ? -0.0260 ? -0.0561 ? -0.1290 ? 0.5658 ? -0.1841 ? 0.0003 ? 2 'X-RAY DIFFRACTION' ? refined 83.7405 40.4867 23.1617 0.1471 ? 0.0087 ? 0.0245 ? 0.2640 ? 0.0001 ? 0.1915 ? 6.6712 ? 3.3714 ? 6.3908 ? 2.6005 ? 3.2240 ? 7.7559 ? 0.2115 ? 0.5614 ? -0.0609 ? 0.1169 ? 0.0770 ? -0.2581 ? 0.2899 ? 0.8519 ? -0.2778 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? 'chain A and resi 9:89' 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? 'chain A and resi 90:117' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.9_1692)' 6 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CZ _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 95 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 95 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_755 _pdbx_validate_symm_contact.dist 1.95 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM094585 1 'Department of Energy (DOE, United States)' 'United States' DE-AC02-06CH11357 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #