HEADER LIGASE 18-NOV-14 4WZ1 OBSLTE 21-JAN-15 4WZ1 4XI1 TITLE CRYSTAL STRUCTURE OF U-BOX 2 OF LUBX / LEGU2 / LPP2887 FROM LEGIONELLA TITLE 2 PNEUMOPHILA STR. PARIS, WILD-TYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE LUBX; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LEGIONELLA U-BOX PROTEIN; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 297246; SOURCE 4 STRAIN: PARIS; SOURCE 5 GENE: LUBX, LPP2887; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV-LIC KEYWDS ALPHA/BETA PROTEIN, EFFECTOR, STRUCTURAL GENOMICS, PSI-BIOLOGY, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,A.T.QUAILE,T.SKARINA,M.CUFF,R.DI LEO,V.YIM,A.SAVCHENKO, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 21-JAN-15 4WZ1 1 OBSLTE REVDAT 1 24-DEC-14 4WZ1 0 JRNL AUTH A.T.QUAILE,M.L.URBANUS,P.J.STOGIOS,B.NOCEK,T.SKARINA, JRNL AUTH 2 A.W.ENSMINGER,A.SAVCHENKO,A.JOACHIMIAK JRNL TITL MOLECULAR CHARACTERIZATION OF LUBX: FUNCTIONAL DIVERGENCE OF JRNL TITL 2 THE U-BOX FOLD BY LEGIONELLA PNEUMOPHILA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 14636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8741 - 4.9082 0.82 2719 143 0.1640 0.1955 REMARK 3 2 4.9082 - 3.9054 0.88 2760 146 0.1434 0.1637 REMARK 3 3 3.9054 - 3.4146 0.91 2795 146 0.1774 0.2325 REMARK 3 4 3.4146 - 3.1037 0.92 2801 148 0.2252 0.2858 REMARK 3 5 3.1037 - 2.8820 0.93 2829 149 0.2603 0.3024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1908 REMARK 3 ANGLE : 1.050 2561 REMARK 3 CHIRALITY : 0.066 295 REMARK 3 PLANARITY : 0.004 317 REMARK 3 DIHEDRAL : 16.717 733 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 123:158 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7312 47.4624 64.8836 REMARK 3 T TENSOR REMARK 3 T11: 0.9450 T22: 0.4076 REMARK 3 T33: 0.5492 T12: 0.0119 REMARK 3 T13: 0.0146 T23: 0.1105 REMARK 3 L TENSOR REMARK 3 L11: 1.4458 L22: 2.3513 REMARK 3 L33: 5.2016 L12: -1.2639 REMARK 3 L13: -0.7087 L23: -1.6271 REMARK 3 S TENSOR REMARK 3 S11: 0.1541 S12: -0.1368 S13: 0.3765 REMARK 3 S21: -0.4426 S22: -0.1002 S23: 0.0238 REMARK 3 S31: -0.8106 S32: -0.1129 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 159:182 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0669 46.1755 56.5071 REMARK 3 T TENSOR REMARK 3 T11: 1.0939 T22: 0.7154 REMARK 3 T33: 0.5656 T12: 0.0624 REMARK 3 T13: -0.1384 T23: 0.1238 REMARK 3 L TENSOR REMARK 3 L11: 1.9796 L22: 1.6821 REMARK 3 L33: 0.8231 L12: 1.6702 REMARK 3 L13: 0.9920 L23: 0.5502 REMARK 3 S TENSOR REMARK 3 S11: -0.3251 S12: 0.3267 S13: 0.2474 REMARK 3 S21: -0.4683 S22: 0.6319 S23: 0.0795 REMARK 3 S31: -0.1288 S32: -1.1884 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 183:198 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5666 46.5064 78.6103 REMARK 3 T TENSOR REMARK 3 T11: 0.6681 T22: 0.6182 REMARK 3 T33: 0.6184 T12: -0.1025 REMARK 3 T13: -0.0212 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.2005 L22: 0.4345 REMARK 3 L33: 0.7277 L12: 0.0215 REMARK 3 L13: 0.3636 L23: -0.2080 REMARK 3 S TENSOR REMARK 3 S11: -0.1950 S12: -0.3843 S13: 0.4610 REMARK 3 S21: 0.0399 S22: -0.3679 S23: -0.2827 REMARK 3 S31: -0.7854 S32: -0.2629 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESI 124:158 REMARK 3 ORIGIN FOR THE GROUP (A): 44.6116 31.8337 62.3186 REMARK 3 T TENSOR REMARK 3 T11: 0.5919 T22: 0.5659 REMARK 3 T33: 0.4825 T12: -0.0764 REMARK 3 T13: 0.0880 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.4539 L22: 1.7240 REMARK 3 L33: 3.9622 L12: -0.3326 REMARK 3 L13: -2.0037 L23: -1.4176 REMARK 3 S TENSOR REMARK 3 S11: 0.1683 S12: 0.3892 S13: -0.2162 REMARK 3 S21: -0.7027 S22: -0.0517 S23: -0.0797 REMARK 3 S31: -0.1423 S32: 0.3619 S33: 0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESI 159:182 REMARK 3 ORIGIN FOR THE GROUP (A): 55.6816 36.2332 65.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.6302 T22: 0.9862 REMARK 3 T33: 0.6271 T12: -0.1927 REMARK 3 T13: 0.1557 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.3194 L22: 1.3520 REMARK 3 L33: 1.0540 L12: 0.3483 REMARK 3 L13: -0.3872 L23: 1.0154 REMARK 3 S TENSOR REMARK 3 S11: 0.4736 S12: -0.1887 S13: -0.5105 REMARK 3 S21: 0.2882 S22: -0.1681 S23: -0.4409 REMARK 3 S31: -0.9708 S32: 0.9716 S33: 0.0110 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESI 183:198 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8708 24.7827 67.4462 REMARK 3 T TENSOR REMARK 3 T11: 0.6440 T22: 0.4569 REMARK 3 T33: 0.4621 T12: -0.0216 REMARK 3 T13: -0.0083 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.3462 L22: 1.3728 REMARK 3 L33: 1.4026 L12: -0.0256 REMARK 3 L13: -0.5658 L23: -1.2552 REMARK 3 S TENSOR REMARK 3 S11: 0.4313 S12: 0.3743 S13: -1.0493 REMARK 3 S21: 0.0408 S22: -0.1839 S23: -0.9270 REMARK 3 S31: -0.0986 S32: -0.0689 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN C AND RESI 123:158 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3467 25.3907 77.1304 REMARK 3 T TENSOR REMARK 3 T11: 0.4109 T22: 0.5161 REMARK 3 T33: 0.6098 T12: -0.0411 REMARK 3 T13: -0.1078 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 3.9158 L22: 3.2654 REMARK 3 L33: 2.2074 L12: 0.0725 REMARK 3 L13: 0.4031 L23: -2.3086 REMARK 3 S TENSOR REMARK 3 S11: 0.3638 S12: 0.0624 S13: -0.0841 REMARK 3 S21: -0.3285 S22: -0.2621 S23: 0.2651 REMARK 3 S31: -0.0976 S32: -0.2230 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN C AND RESI 159:182 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0261 27.0335 87.5851 REMARK 3 T TENSOR REMARK 3 T11: 0.3989 T22: 0.4935 REMARK 3 T33: 0.5200 T12: 0.0137 REMARK 3 T13: -0.0177 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.4652 L22: 0.7255 REMARK 3 L33: 3.0938 L12: 0.0011 REMARK 3 L13: 0.7513 L23: -0.9613 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -1.0315 S13: -0.1967 REMARK 3 S21: -0.0314 S22: -0.0729 S23: 0.0822 REMARK 3 S31: 0.0679 S32: 0.1971 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN C AND RESI 183:197 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1918 31.2897 69.6468 REMARK 3 T TENSOR REMARK 3 T11: 0.4672 T22: 0.6256 REMARK 3 T33: 0.6164 T12: -0.0499 REMARK 3 T13: -0.0958 T23: 0.0606 REMARK 3 L TENSOR REMARK 3 L11: 1.5228 L22: 0.5554 REMARK 3 L33: 0.7889 L12: 0.0717 REMARK 3 L13: -1.0798 L23: -0.1275 REMARK 3 S TENSOR REMARK 3 S11: 0.1168 S12: 0.4308 S13: 0.5125 REMARK 3 S21: -0.0123 S22: 0.2793 S23: 0.0990 REMARK 3 S31: -0.7563 S32: -0.3165 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790433 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.81100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX, COOT REMARK 200 STARTING MODEL: PDB CODE FOR SAME FRAGMENT OF SAME PROTEIN, NATIVE REMARK 200 - TO BE FILLED IN LATER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MG/ML PROTEIN, V8 PROTEASE (1:100), REMARK 280 1.6 M AMMONIUM SULFATE, 0.1 M HEPES PH 7.5 AND 2% HEXANEDIOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL C 301 LIES ON A SPECIAL POSITION. REMARK 375 C3 HEZ C 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 411 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 102 REMARK 465 TYR A 103 REMARK 465 GLU A 104 REMARK 465 LYS A 105 REMARK 465 LEU A 106 REMARK 465 LYS A 107 REMARK 465 ASN A 108 REMARK 465 ARG A 109 REMARK 465 LEU A 110 REMARK 465 VAL A 111 REMARK 465 GLN A 112 REMARK 465 ASN A 113 REMARK 465 ALA A 114 REMARK 465 ARG A 115 REMARK 465 VAL A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 ARG A 119 REMARK 465 GLN A 120 REMARK 465 LYS A 121 REMARK 465 GLU A 122 REMARK 465 VAL A 199 REMARK 465 GLN A 200 REMARK 465 LYS A 201 REMARK 465 ASN A 202 REMARK 465 ASN B 102 REMARK 465 TYR B 103 REMARK 465 GLU B 104 REMARK 465 LYS B 105 REMARK 465 LEU B 106 REMARK 465 LYS B 107 REMARK 465 ASN B 108 REMARK 465 ARG B 109 REMARK 465 LEU B 110 REMARK 465 VAL B 111 REMARK 465 GLN B 112 REMARK 465 ASN B 113 REMARK 465 ALA B 114 REMARK 465 ARG B 115 REMARK 465 VAL B 116 REMARK 465 ALA B 117 REMARK 465 ALA B 118 REMARK 465 ARG B 119 REMARK 465 GLN B 120 REMARK 465 LYS B 121 REMARK 465 GLU B 122 REMARK 465 TYR B 123 REMARK 465 VAL B 199 REMARK 465 GLN B 200 REMARK 465 LYS B 201 REMARK 465 ASN B 202 REMARK 465 ASN C 102 REMARK 465 TYR C 103 REMARK 465 GLU C 104 REMARK 465 LYS C 105 REMARK 465 LEU C 106 REMARK 465 LYS C 107 REMARK 465 ASN C 108 REMARK 465 ARG C 109 REMARK 465 LEU C 110 REMARK 465 VAL C 111 REMARK 465 GLN C 112 REMARK 465 ASN C 113 REMARK 465 ALA C 114 REMARK 465 ARG C 115 REMARK 465 VAL C 116 REMARK 465 ALA C 117 REMARK 465 ALA C 118 REMARK 465 ARG C 119 REMARK 465 GLN C 120 REMARK 465 LYS C 121 REMARK 465 GLU C 122 REMARK 465 GLU C 198 REMARK 465 VAL C 199 REMARK 465 GLN C 200 REMARK 465 LYS C 201 REMARK 465 ASN C 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 137 -159.91 -133.42 REMARK 500 ASN A 165 44.54 70.15 REMARK 500 LEU B 173 111.75 -170.53 REMARK 500 GLU C 125 178.77 -58.82 REMARK 500 LYS C 140 -60.96 -96.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ C 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WZ1 RELATED DB: PDB REMARK 900 U-BOX 1 OF THE SAME PROTEIN REMARK 900 RELATED ID: MCSG-APC108251 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4WZ3 RELATED DB: PDB REMARK 900 COMPLEX BETWEEN U-BOX 1 AND UBE2D2 DBREF 4WZ1 A 102 202 PDB 4WZ1 4WZ1 102 202 DBREF 4WZ1 B 102 202 PDB 4WZ1 4WZ1 102 202 DBREF 4WZ1 C 102 202 PDB 4WZ1 4WZ1 102 202 SEQRES 1 A 101 ASN TYR GLU LYS LEU LYS ASN ARG LEU VAL GLN ASN ALA SEQRES 2 A 101 ARG VAL ALA ALA ARG GLN LYS GLU TYR THR GLU ILE PRO SEQRES 3 A 101 ASP ILE PHE LEU CYS PRO ILE SER LYS THR LEU ILE LYS SEQRES 4 A 101 THR PRO VAL ILE THR ALA GLN GLY LYS VAL TYR ASP GLN SEQRES 5 A 101 GLU ALA LEU SER ASN PHE LEU ILE ALA THR GLY ASN LYS SEQRES 6 A 101 ASP GLU THR GLY LYS LYS LEU SER ILE ASP ASP VAL VAL SEQRES 7 A 101 VAL PHE ASP GLU LEU TYR GLN GLN ILE LYS VAL TYR ASN SEQRES 8 A 101 PHE TYR ARG LYS ARG GLU VAL GLN LYS ASN SEQRES 1 B 101 ASN TYR GLU LYS LEU LYS ASN ARG LEU VAL GLN ASN ALA SEQRES 2 B 101 ARG VAL ALA ALA ARG GLN LYS GLU TYR THR GLU ILE PRO SEQRES 3 B 101 ASP ILE PHE LEU CYS PRO ILE SER LYS THR LEU ILE LYS SEQRES 4 B 101 THR PRO VAL ILE THR ALA GLN GLY LYS VAL TYR ASP GLN SEQRES 5 B 101 GLU ALA LEU SER ASN PHE LEU ILE ALA THR GLY ASN LYS SEQRES 6 B 101 ASP GLU THR GLY LYS LYS LEU SER ILE ASP ASP VAL VAL SEQRES 7 B 101 VAL PHE ASP GLU LEU TYR GLN GLN ILE LYS VAL TYR ASN SEQRES 8 B 101 PHE TYR ARG LYS ARG GLU VAL GLN LYS ASN SEQRES 1 C 101 ASN TYR GLU LYS LEU LYS ASN ARG LEU VAL GLN ASN ALA SEQRES 2 C 101 ARG VAL ALA ALA ARG GLN LYS GLU TYR THR GLU ILE PRO SEQRES 3 C 101 ASP ILE PHE LEU CYS PRO ILE SER LYS THR LEU ILE LYS SEQRES 4 C 101 THR PRO VAL ILE THR ALA GLN GLY LYS VAL TYR ASP GLN SEQRES 5 C 101 GLU ALA LEU SER ASN PHE LEU ILE ALA THR GLY ASN LYS SEQRES 6 C 101 ASP GLU THR GLY LYS LYS LEU SER ILE ASP ASP VAL VAL SEQRES 7 C 101 VAL PHE ASP GLU LEU TYR GLN GLN ILE LYS VAL TYR ASN SEQRES 8 C 101 PHE TYR ARG LYS ARG GLU VAL GLN LYS ASN HET CL A 301 1 HET HEZ A 302 8 HET HEZ B 301 8 HET HEZ B 302 8 HET HEZ B 303 8 HET GOL B 304 6 HET CL C 301 1 HET HEZ C 302 8 HETNAM CL CHLORIDE ION HETNAM HEZ HEXANE-1,6-DIOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CL 2(CL 1-) FORMUL 5 HEZ 5(C6 H14 O2) FORMUL 9 GOL C3 H8 O3 FORMUL 12 HOH *89(H2 O) HELIX 1 AA1 PRO A 127 LEU A 131 5 5 HELIX 2 AA2 GLN A 153 GLY A 164 1 12 HELIX 3 AA3 SER A 174 VAL A 178 5 5 HELIX 4 AA4 PHE A 181 GLU A 198 1 18 HELIX 5 AA5 PRO B 127 LEU B 131 5 5 HELIX 6 AA6 GLN B 153 GLY B 164 1 12 HELIX 7 AA7 SER B 174 VAL B 178 5 5 HELIX 8 AA8 PHE B 181 ARG B 197 1 17 HELIX 9 AA9 PRO C 127 LEU C 131 5 5 HELIX 10 AB1 GLN C 153 GLY C 164 1 12 HELIX 11 AB2 SER C 174 VAL C 178 5 5 HELIX 12 AB3 PHE C 181 LYS C 196 1 16 SHEET 1 AA1 3 VAL A 150 ASP A 152 0 SHEET 2 AA1 3 PRO A 142 ILE A 144 -1 N VAL A 143 O TYR A 151 SHEET 3 AA1 3 VAL A 179 VAL A 180 -1 O VAL A 179 N ILE A 144 SHEET 1 AA2 3 VAL B 150 ASP B 152 0 SHEET 2 AA2 3 PRO B 142 ILE B 144 -1 N VAL B 143 O TYR B 151 SHEET 3 AA2 3 VAL B 179 VAL B 180 -1 O VAL B 179 N ILE B 144 SHEET 1 AA3 3 VAL C 150 ASP C 152 0 SHEET 2 AA3 3 PRO C 142 ILE C 144 -1 N VAL C 143 O TYR C 151 SHEET 3 AA3 3 VAL C 179 VAL C 180 -1 O VAL C 179 N ILE C 144 SITE 1 AC1 3 GLN A 187 HOH A 407 GLN B 187 SITE 1 AC2 6 VAL A 180 PHE A 181 ASP A 182 GLN B 187 SITE 2 AC2 6 PHE C 193 TYR C 194 SITE 1 AC3 7 PHE B 193 TYR B 194 PHE C 130 VAL C 180 SITE 2 AC3 7 ASP C 182 GLN C 187 HOH C 402 SITE 1 AC4 4 TYR B 194 ARG B 197 GLU B 198 TYR C 194 SITE 1 AC5 7 PHE A 130 GLN A 187 PHE A 193 TYR A 194 SITE 2 AC5 7 VAL B 180 ASP B 182 GLU B 183 SITE 1 AC6 2 ARG B 195 LYS B 196 SITE 1 AC7 2 GLN C 187 HOH C 411 SITE 1 AC8 4 ASP C 128 ILE C 129 LYS C 149 VAL C 150 CRYST1 160.226 160.226 160.226 90.00 90.00 90.00 P 4 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006241 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006241 0.00000