HEADER LIGASE 18-NOV-14 4WZ2 TITLE CRYSTAL STRUCTURE OF U-BOX 2 OF LUBX / LEGU2 / LPP2887 FROM LEGIONELLA TITLE 2 PNEUMOPHILA STR. PARIS, ILE175MET MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE LUBX; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LEGIONELLA U-BOX PROTEIN; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 297246; SOURCE 4 STRAIN: PARIS; SOURCE 5 GENE: LUBX, LPP2887; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV-LIC KEYWDS ALPHA/BETA PROTEIN, EFFECTOR, STRUCTURAL GENOMICS, PSI-BIOLOGY, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,A.T.QUALIE,T.SKARINA,B.NOCEK,R.DI LEO,V.YIM,A.SAVCHENKO, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 04-DEC-19 4WZ2 1 REMARK REVDAT 4 20-SEP-17 4WZ2 1 JRNL REMARK REVDAT 3 19-AUG-15 4WZ2 1 JRNL REVDAT 2 29-JUL-15 4WZ2 1 JRNL REVDAT 1 28-JAN-15 4WZ2 0 JRNL AUTH A.T.QUAILE,M.L.URBANUS,P.J.STOGIOS,B.NOCEK,T.SKARINA, JRNL AUTH 2 A.W.ENSMINGER,A.SAVCHENKO JRNL TITL MOLECULAR CHARACTERIZATION OF LUBX: FUNCTIONAL DIVERGENCE OF JRNL TITL 2 THE U-BOX FOLD BY LEGIONELLA PNEUMOPHILA. JRNL REF STRUCTURE V. 23 1459 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26146184 JRNL DOI 10.1016/J.STR.2015.05.020 REMARK 2 REMARK 2 RESOLUTION. 3.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 9409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7224 - 6.5098 0.95 1359 149 0.1692 0.2048 REMARK 3 2 6.5098 - 5.1712 0.97 1272 143 0.1876 0.2088 REMARK 3 3 5.1712 - 4.5188 0.97 1267 140 0.1525 0.1657 REMARK 3 4 4.5188 - 4.1062 0.98 1239 137 0.1523 0.1959 REMARK 3 5 4.1062 - 3.8122 0.93 1174 134 0.1799 0.2435 REMARK 3 6 3.8122 - 3.5876 0.90 1138 129 0.2013 0.2512 REMARK 3 7 3.5876 - 3.4080 0.81 1012 116 0.2435 0.2933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1870 REMARK 3 ANGLE : 0.535 2511 REMARK 3 CHIRALITY : 0.025 290 REMARK 3 PLANARITY : 0.003 313 REMARK 3 DIHEDRAL : 12.758 721 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790433 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9956 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MG/ML PROTEIN, 1.6 M AMMONIUM REMARK 280 SULFATE, 0.1 M HEPES (PH 7.5) AND 2% HEXANEDIOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL C 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 102 REMARK 465 TYR A 103 REMARK 465 GLU A 104 REMARK 465 LYS A 105 REMARK 465 LEU A 106 REMARK 465 LYS A 107 REMARK 465 ASN A 108 REMARK 465 ARG A 109 REMARK 465 LEU A 110 REMARK 465 VAL A 111 REMARK 465 GLN A 112 REMARK 465 ASN A 113 REMARK 465 ALA A 114 REMARK 465 ARG A 115 REMARK 465 VAL A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 ARG A 119 REMARK 465 GLN A 120 REMARK 465 LYS A 121 REMARK 465 GLU A 122 REMARK 465 TYR A 123 REMARK 465 VAL A 199 REMARK 465 GLN A 200 REMARK 465 LYS A 201 REMARK 465 ASN A 202 REMARK 465 ASN B 102 REMARK 465 TYR B 103 REMARK 465 GLU B 104 REMARK 465 LYS B 105 REMARK 465 LEU B 106 REMARK 465 LYS B 107 REMARK 465 ASN B 108 REMARK 465 ARG B 109 REMARK 465 LEU B 110 REMARK 465 VAL B 111 REMARK 465 GLN B 112 REMARK 465 ASN B 113 REMARK 465 ALA B 114 REMARK 465 ARG B 115 REMARK 465 VAL B 116 REMARK 465 ALA B 117 REMARK 465 ALA B 118 REMARK 465 ARG B 119 REMARK 465 GLN B 120 REMARK 465 LYS B 121 REMARK 465 GLU B 122 REMARK 465 TYR B 123 REMARK 465 VAL B 199 REMARK 465 GLN B 200 REMARK 465 LYS B 201 REMARK 465 ASN B 202 REMARK 465 ASN C 102 REMARK 465 TYR C 103 REMARK 465 GLU C 104 REMARK 465 LYS C 105 REMARK 465 LEU C 106 REMARK 465 LYS C 107 REMARK 465 ASN C 108 REMARK 465 ARG C 109 REMARK 465 LEU C 110 REMARK 465 VAL C 111 REMARK 465 GLN C 112 REMARK 465 ASN C 113 REMARK 465 ALA C 114 REMARK 465 ARG C 115 REMARK 465 VAL C 116 REMARK 465 ALA C 117 REMARK 465 ALA C 118 REMARK 465 ARG C 119 REMARK 465 GLN C 120 REMARK 465 LYS C 121 REMARK 465 GLU C 122 REMARK 465 TYR C 123 REMARK 465 GLU C 198 REMARK 465 VAL C 199 REMARK 465 GLN C 200 REMARK 465 LYS C 201 REMARK 465 ASN C 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 134 -61.42 -100.64 REMARK 500 ILE B 134 -60.57 -96.61 REMARK 500 LYS C 196 35.55 -86.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WZ0 RELATED DB: PDB REMARK 900 U-BOX 1 REMARK 900 RELATED ID: MCSG-APC108251 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4WZ1 RELATED DB: PDB REMARK 900 U-BOX 2 (WILD-TYPE) REMARK 900 RELATED ID: 4WZ3 RELATED DB: PDB REMARK 900 U-BOX 1 IN COMPLEX WITH UBE2D2 DBREF 4WZ2 A 102 202 UNP Q5X159 LUBX_LEGPA 102 202 DBREF 4WZ2 B 102 202 UNP Q5X159 LUBX_LEGPA 102 202 DBREF 4WZ2 C 102 202 UNP Q5X159 LUBX_LEGPA 102 202 SEQADV 4WZ2 MSE A 175 UNP Q5X159 ILE 175 ENGINEERED MUTATION SEQADV 4WZ2 MSE B 175 UNP Q5X159 ILE 175 ENGINEERED MUTATION SEQADV 4WZ2 MSE C 175 UNP Q5X159 ILE 175 ENGINEERED MUTATION SEQRES 1 A 101 ASN TYR GLU LYS LEU LYS ASN ARG LEU VAL GLN ASN ALA SEQRES 2 A 101 ARG VAL ALA ALA ARG GLN LYS GLU TYR THR GLU ILE PRO SEQRES 3 A 101 ASP ILE PHE LEU CYS PRO ILE SER LYS THR LEU ILE LYS SEQRES 4 A 101 THR PRO VAL ILE THR ALA GLN GLY LYS VAL TYR ASP GLN SEQRES 5 A 101 GLU ALA LEU SER ASN PHE LEU ILE ALA THR GLY ASN LYS SEQRES 6 A 101 ASP GLU THR GLY LYS LYS LEU SER MSE ASP ASP VAL VAL SEQRES 7 A 101 VAL PHE ASP GLU LEU TYR GLN GLN ILE LYS VAL TYR ASN SEQRES 8 A 101 PHE TYR ARG LYS ARG GLU VAL GLN LYS ASN SEQRES 1 B 101 ASN TYR GLU LYS LEU LYS ASN ARG LEU VAL GLN ASN ALA SEQRES 2 B 101 ARG VAL ALA ALA ARG GLN LYS GLU TYR THR GLU ILE PRO SEQRES 3 B 101 ASP ILE PHE LEU CYS PRO ILE SER LYS THR LEU ILE LYS SEQRES 4 B 101 THR PRO VAL ILE THR ALA GLN GLY LYS VAL TYR ASP GLN SEQRES 5 B 101 GLU ALA LEU SER ASN PHE LEU ILE ALA THR GLY ASN LYS SEQRES 6 B 101 ASP GLU THR GLY LYS LYS LEU SER MSE ASP ASP VAL VAL SEQRES 7 B 101 VAL PHE ASP GLU LEU TYR GLN GLN ILE LYS VAL TYR ASN SEQRES 8 B 101 PHE TYR ARG LYS ARG GLU VAL GLN LYS ASN SEQRES 1 C 101 ASN TYR GLU LYS LEU LYS ASN ARG LEU VAL GLN ASN ALA SEQRES 2 C 101 ARG VAL ALA ALA ARG GLN LYS GLU TYR THR GLU ILE PRO SEQRES 3 C 101 ASP ILE PHE LEU CYS PRO ILE SER LYS THR LEU ILE LYS SEQRES 4 C 101 THR PRO VAL ILE THR ALA GLN GLY LYS VAL TYR ASP GLN SEQRES 5 C 101 GLU ALA LEU SER ASN PHE LEU ILE ALA THR GLY ASN LYS SEQRES 6 C 101 ASP GLU THR GLY LYS LYS LEU SER MSE ASP ASP VAL VAL SEQRES 7 C 101 VAL PHE ASP GLU LEU TYR GLN GLN ILE LYS VAL TYR ASN SEQRES 8 C 101 PHE TYR ARG LYS ARG GLU VAL GLN LYS ASN HET MSE A 175 8 HET MSE B 175 8 HET MSE C 175 8 HET HEZ A 301 8 HET CL A 302 1 HET HEZ B 301 8 HET HEZ B 302 8 HET HEZ B 303 8 HET CL C 301 1 HETNAM MSE SELENOMETHIONINE HETNAM HEZ HEXANE-1,6-DIOL HETNAM CL CHLORIDE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 4 HEZ 4(C6 H14 O2) FORMUL 5 CL 2(CL 1-) FORMUL 10 HOH *24(H2 O) HELIX 1 AA1 PRO A 127 LEU A 131 5 5 HELIX 2 AA2 GLN A 153 GLY A 164 1 12 HELIX 3 AA3 SER A 174 VAL A 178 5 5 HELIX 4 AA4 PHE A 181 LYS A 196 1 16 HELIX 5 AA5 PRO B 127 LEU B 131 5 5 HELIX 6 AA6 GLN B 153 THR B 163 1 11 HELIX 7 AA7 SER B 174 VAL B 178 5 5 HELIX 8 AA8 PHE B 181 ARG B 197 1 17 HELIX 9 AA9 PRO C 127 LEU C 131 5 5 HELIX 10 AB1 GLN C 153 GLY C 164 1 12 HELIX 11 AB2 PHE C 181 LYS C 196 1 16 SHEET 1 AA1 3 VAL A 150 ASP A 152 0 SHEET 2 AA1 3 PRO A 142 ILE A 144 -1 N VAL A 143 O TYR A 151 SHEET 3 AA1 3 VAL A 179 VAL A 180 -1 O VAL A 179 N ILE A 144 SHEET 1 AA2 3 VAL B 150 ASP B 152 0 SHEET 2 AA2 3 PRO B 142 ILE B 144 -1 N VAL B 143 O TYR B 151 SHEET 3 AA2 3 VAL B 179 VAL B 180 -1 O VAL B 179 N ILE B 144 SHEET 1 AA3 3 VAL C 150 ASP C 152 0 SHEET 2 AA3 3 PRO C 142 ILE C 144 -1 N VAL C 143 O TYR C 151 SHEET 3 AA3 3 VAL C 179 VAL C 180 -1 O VAL C 179 N ILE C 144 LINK C SER A 174 N MSE A 175 1555 1555 1.33 LINK C MSE A 175 N ASP A 176 1555 1555 1.33 LINK C SER B 174 N MSE B 175 1555 1555 1.33 LINK C MSE B 175 N ASP B 176 1555 1555 1.33 LINK C SER C 174 N MSE C 175 1555 1555 1.31 LINK C MSE C 175 N ASP C 176 1555 1555 1.30 SITE 1 AC1 4 VAL A 180 ASP A 182 PHE C 193 TYR C 194 SITE 1 AC2 2 GLN A 187 GLN B 187 SITE 1 AC3 7 GLN A 186 GLN A 187 PHE A 193 TYR A 194 SITE 2 AC3 7 VAL B 180 PHE B 181 ASP B 182 SITE 1 AC4 5 TYR B 194 ARG B 195 GLU B 198 TYR C 194 SITE 2 AC4 5 ARG C 197 SITE 1 AC5 7 GLN B 186 PHE B 193 TYR B 194 HOH B 402 SITE 2 AC5 7 VAL C 180 ASP C 182 GLN C 187 SITE 1 AC6 2 GLN C 187 HOH C 402 CRYST1 160.033 160.033 160.033 90.00 90.00 90.00 P 4 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006249 0.00000