HEADER LIGASE 18-NOV-14 4WZ3 TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN LUBX/LEGU2/LPP2887 U-BOX 1 TITLE 2 AND HOMO SAPIENS UBE2D2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN CARRIER PROTEIN D2,UBIQUITIN-CONJUGATING ENZYME COMPND 5 E2(17)KB 2,UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2,UBIQUITIN-PROTEIN COMPND 6 LIGASE D2,P53-REGULATED UBIQUITIN-CONJUGATING ENZYME 1; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE LUBX; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: LEGIONELLA U-BOX PROTEIN; COMPND 14 EC: 6.3.2.-; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV-LIC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 13 ORGANISM_TAXID: 297246; SOURCE 14 STRAIN: PARIS; SOURCE 15 GENE: LUBX, LPP2887; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: P15TV-LIC KEYWDS ALPHA/BETA PROTEIN, EFFECTOR, ACTIVATING ENZYME, STRUCTURAL GENOMICS, KEYWDS 2 PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,A.T.QUAILE,T.SKARINA,B.NOCEK,R.DI LEO,V.YIM,A.SAVCHENKO, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 7 15-NOV-23 4WZ3 1 REMARK REVDAT 6 27-SEP-23 4WZ3 1 REMARK REVDAT 5 04-DEC-19 4WZ3 1 REMARK REVDAT 4 20-SEP-17 4WZ3 1 REMARK REVDAT 3 19-AUG-15 4WZ3 1 JRNL REMARK REVDAT 2 29-JUL-15 4WZ3 1 JRNL REVDAT 1 07-JAN-15 4WZ3 0 JRNL AUTH A.T.QUAILE,M.L.URBANUS,P.J.STOGIOS,B.NOCEK,T.SKARINA, JRNL AUTH 2 A.W.ENSMINGER,A.SAVCHENKO JRNL TITL MOLECULAR CHARACTERIZATION OF LUBX: FUNCTIONAL DIVERGENCE OF JRNL TITL 2 THE U-BOX FOLD BY LEGIONELLA PNEUMOPHILA. JRNL REF STRUCTURE V. 23 1459 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26146184 JRNL DOI 10.1016/J.STR.2015.05.020 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 3 NUMBER OF REFLECTIONS : 10884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8584 - 5.1570 0.95 2805 143 0.1569 0.1782 REMARK 3 2 5.1570 - 4.0952 0.97 2890 141 0.1283 0.1964 REMARK 3 3 4.0952 - 3.5781 0.98 2895 152 0.1467 0.1959 REMARK 3 4 3.5781 - 3.2512 0.98 2912 159 0.1831 0.2300 REMARK 3 5 3.2512 - 3.0183 0.91 2699 158 0.2112 0.2829 REMARK 3 6 3.0183 - 2.8404 0.74 2170 128 0.2306 0.2851 REMARK 3 7 2.8404 - 2.7000 0.53 1563 87 0.2443 0.3660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2746 REMARK 3 ANGLE : 0.903 3737 REMARK 3 CHIRALITY : 0.044 417 REMARK 3 PLANARITY : 0.007 484 REMARK 3 DIHEDRAL : 13.874 1055 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 0:18 REMARK 3 ORIGIN FOR THE GROUP (A): -36.0447 13.4072 10.1917 REMARK 3 T TENSOR REMARK 3 T11: 0.3713 T22: 0.4776 REMARK 3 T33: 0.5333 T12: 0.0216 REMARK 3 T13: 0.0903 T23: 0.1134 REMARK 3 L TENSOR REMARK 3 L11: 3.1130 L22: 3.2676 REMARK 3 L33: 3.0972 L12: 1.6507 REMARK 3 L13: 2.4143 L23: -0.4040 REMARK 3 S TENSOR REMARK 3 S11: 0.2494 S12: -1.0676 S13: -0.3933 REMARK 3 S21: 0.4166 S22: -0.1271 S23: -0.8479 REMARK 3 S31: -0.5462 S32: -0.1519 S33: -0.0797 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 19:38 REMARK 3 ORIGIN FOR THE GROUP (A): -42.6781 4.1993 11.3687 REMARK 3 T TENSOR REMARK 3 T11: 0.2786 T22: 0.3968 REMARK 3 T33: 0.4997 T12: -0.0109 REMARK 3 T13: -0.1012 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 8.7445 L22: 8.3195 REMARK 3 L33: 8.2605 L12: 6.0095 REMARK 3 L13: -5.4911 L23: -6.6932 REMARK 3 S TENSOR REMARK 3 S11: -0.1546 S12: -1.3015 S13: -0.7860 REMARK 3 S21: -0.4905 S22: -0.2480 S23: -1.2897 REMARK 3 S31: 0.6995 S32: 1.4969 S33: 0.2197 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 39:116 REMARK 3 ORIGIN FOR THE GROUP (A): -53.8599 9.5298 8.8761 REMARK 3 T TENSOR REMARK 3 T11: 0.2162 T22: 0.2492 REMARK 3 T33: 0.1197 T12: 0.0425 REMARK 3 T13: -0.0127 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 5.7845 L22: 4.6928 REMARK 3 L33: 2.1108 L12: 2.5585 REMARK 3 L13: -0.8116 L23: -2.4642 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: -0.0643 S13: 0.0572 REMARK 3 S21: 0.1190 S22: -0.0305 S23: 0.0750 REMARK 3 S31: -0.2893 S32: -0.3685 S33: -0.0364 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESI 117:147 REMARK 3 ORIGIN FOR THE GROUP (A): -68.5512 3.1306 15.2142 REMARK 3 T TENSOR REMARK 3 T11: 0.2474 T22: 0.4609 REMARK 3 T33: 0.3259 T12: -0.0330 REMARK 3 T13: 0.0403 T23: 0.0745 REMARK 3 L TENSOR REMARK 3 L11: 6.4539 L22: 7.7887 REMARK 3 L33: 2.8351 L12: -3.2774 REMARK 3 L13: 0.5669 L23: -1.5971 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: -0.8599 S13: -0.7663 REMARK 3 S21: 0.7147 S22: 0.2822 S23: 1.1747 REMARK 3 S31: -0.4717 S32: -0.3510 S33: -0.1957 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESI 4:94 REMARK 3 ORIGIN FOR THE GROUP (A): -37.1305 31.9078 5.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.2390 T22: 0.2234 REMARK 3 T33: 0.2851 T12: -0.0391 REMARK 3 T13: 0.0762 T23: 0.1187 REMARK 3 L TENSOR REMARK 3 L11: 3.1044 L22: 3.1385 REMARK 3 L33: 4.3426 L12: 0.8909 REMARK 3 L13: 1.5405 L23: 0.5635 REMARK 3 S TENSOR REMARK 3 S11: -0.1789 S12: 0.1493 S13: 0.3520 REMARK 3 S21: -0.3036 S22: 0.1131 S23: 0.1467 REMARK 3 S31: 0.0174 S32: -0.2409 S33: 0.0141 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESI 95:122 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1653 16.0065 20.9715 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.2764 REMARK 3 T33: 0.2757 T12: 0.0293 REMARK 3 T13: 0.0914 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 5.6280 L22: 6.9491 REMARK 3 L33: 9.2877 L12: -4.1611 REMARK 3 L13: 6.6930 L23: -7.3053 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.1728 S13: 0.1510 REMARK 3 S21: -0.1741 S22: -0.2681 S23: -0.2508 REMARK 3 S31: 0.1977 S32: 0.0273 S33: 0.2123 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESI 123:186 REMARK 3 ORIGIN FOR THE GROUP (A): -19.9392 14.7119 33.3483 REMARK 3 T TENSOR REMARK 3 T11: 0.7866 T22: 0.4795 REMARK 3 T33: 0.5992 T12: 0.0500 REMARK 3 T13: 0.3506 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 7.6716 L22: 3.1542 REMARK 3 L33: 1.1748 L12: -4.1121 REMARK 3 L13: -1.1678 L23: 0.9486 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.7006 S13: -0.3260 REMARK 3 S21: 1.1661 S22: 0.2846 S23: 0.7242 REMARK 3 S31: -0.8705 S32: -0.2821 S33: -0.2099 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789897 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4DDI, LUBX U-BOX 1 WT PDB CODE 4WZ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MG/ML OF E2D2.(C85S)-UB CONJUGATE REMARK 280 AND AN EQUIMOLAR CONCENTRATION OF LUBX (1-186), 0.2 M SODIUM REMARK 280 TARTRATE, 0.1 M TRIS-CL (PH 8.5) AND 25% PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.60300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.20600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.90450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.50750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.30150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 GLN B 187 REMARK 465 ILE B 188 REMARK 465 LYS B 189 REMARK 465 VAL B 190 REMARK 465 TYR B 191 REMARK 465 ASN B 192 REMARK 465 PHE B 193 REMARK 465 TYR B 194 REMARK 465 ARG B 195 REMARK 465 LYS B 196 REMARK 465 ARG B 197 REMARK 465 GLU B 198 REMARK 465 VAL B 199 REMARK 465 GLN B 200 REMARK 465 LYS B 201 REMARK 465 ASN B 202 REMARK 465 GLN B 203 REMARK 465 ILE B 204 REMARK 465 GLN B 205 REMARK 465 PRO B 206 REMARK 465 SER B 207 REMARK 465 VAL B 208 REMARK 465 SER B 209 REMARK 465 ASN B 210 REMARK 465 GLY B 211 REMARK 465 PHE B 212 REMARK 465 GLY B 213 REMARK 465 PHE B 214 REMARK 465 PHE B 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 73.78 -117.47 REMARK 500 GLN A 20 33.80 -98.39 REMARK 500 SER A 22 117.19 -169.67 REMARK 500 ALA A 23 -166.22 -121.15 REMARK 500 ASP A 28 108.45 -43.70 REMARK 500 ARG A 90 -117.68 -128.78 REMARK 500 ASP A 130 77.44 -161.45 REMARK 500 SER B 41 -2.87 66.15 REMARK 500 LYS B 69 48.74 -98.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WZ0 RELATED DB: PDB REMARK 900 U-BOX 1 REMARK 900 RELATED ID: MCSG-APC108251 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4WZ1 RELATED DB: PDB REMARK 900 U-BOX 2 (WILD-TYPE) REMARK 900 RELATED ID: 4WZ2 RELATED DB: PDB REMARK 900 U-BOX 2, ILE175MET MUTANT DBREF 4WZ3 A 1 147 UNP P62837 UB2D2_HUMAN 1 147 DBREF 4WZ3 B 1 215 UNP Q5X159 LUBX_LEGPA 1 215 SEQADV 4WZ3 GLY A 0 UNP P62837 EXPRESSION TAG SEQADV 4WZ3 SER A 85 UNP P62837 CYS 85 ENGINEERED MUTATION SEQRES 1 A 148 GLY MET ALA LEU LYS ARG ILE HIS LYS GLU LEU ASN ASP SEQRES 2 A 148 LEU ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY PRO SEQRES 3 A 148 VAL GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE MET SEQRES 4 A 148 GLY PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE PHE SEQRES 5 A 148 LEU THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS PRO SEQRES 6 A 148 PRO LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO ASN SEQRES 7 A 148 ILE ASN SER ASN GLY SER ILE SER LEU ASP ILE LEU ARG SEQRES 8 A 148 SER GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL LEU SEQRES 9 A 148 LEU SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO ASP SEQRES 10 A 148 ASP PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS THR SEQRES 11 A 148 ASP ARG GLU LYS TYR ASN ARG ILE ALA ARG GLU TRP THR SEQRES 12 A 148 GLN LYS TYR ALA MET SEQRES 1 B 215 MSE ALA THR ARG ASN PRO PHE ASP ILE ASP HIS LYS SER SEQRES 2 B 215 LYS TYR LEU ARG GLU ALA ALA LEU GLU ALA ASN LEU SER SEQRES 3 B 215 HIS PRO GLU THR THR PRO THR MSE LEU THR CYS PRO ILE SEQRES 4 B 215 ASP SER GLY PHE LEU LYS ASP PRO VAL ILE THR PRO GLU SEQRES 5 B 215 GLY PHE VAL TYR ASN LYS SER SER ILE LEU LYS TRP LEU SEQRES 6 B 215 GLU THR LYS LYS GLU ASP PRO GLN SER ARG LYS PRO LEU SEQRES 7 B 215 THR ALA LYS ASP LEU GLN PRO PHE PRO GLU LEU LEU ILE SEQRES 8 B 215 ILE VAL ASN ARG PHE VAL GLU THR GLN THR ASN TYR GLU SEQRES 9 B 215 LYS LEU LYS ASN ARG LEU VAL GLN ASN ALA ARG VAL ALA SEQRES 10 B 215 ALA ARG GLN LYS GLU TYR THR GLU ILE PRO ASP ILE PHE SEQRES 11 B 215 LEU CYS PRO ILE SER LYS THR LEU ILE LYS THR PRO VAL SEQRES 12 B 215 ILE THR ALA GLN GLY LYS VAL TYR ASP GLN GLU ALA LEU SEQRES 13 B 215 SER ASN PHE LEU ILE ALA THR GLY ASN LYS ASP GLU THR SEQRES 14 B 215 GLY LYS LYS LEU SER ILE ASP ASP VAL VAL VAL PHE ASP SEQRES 15 B 215 GLU LEU TYR GLN GLN ILE LYS VAL TYR ASN PHE TYR ARG SEQRES 16 B 215 LYS ARG GLU VAL GLN LYS ASN GLN ILE GLN PRO SER VAL SEQRES 17 B 215 SER ASN GLY PHE GLY PHE PHE MODRES 4WZ3 MSE B 34 MET MODIFIED RESIDUE HET MSE B 34 8 HETNAM MSE SELENOMETHIONINE FORMUL 2 MSE C5 H11 N O2 SE FORMUL 3 HOH *53(H2 O) HELIX 1 AA1 MET A 1 LEU A 13 1 13 HELIX 2 AA2 LEU A 86 ARG A 90 5 5 HELIX 3 AA3 THR A 98 ASP A 112 1 15 HELIX 4 AA4 VAL A 120 ASP A 130 1 11 HELIX 5 AA5 ASP A 130 ALA A 146 1 17 HELIX 6 AA6 ASP B 10 SER B 26 1 17 HELIX 7 AA7 PRO B 32 THR B 36 5 5 HELIX 8 AA8 LYS B 58 GLU B 66 1 9 HELIX 9 AA9 THR B 79 LEU B 83 5 5 HELIX 10 AB1 LEU B 89 ARG B 119 1 31 HELIX 11 AB2 PRO B 127 LEU B 131 5 5 HELIX 12 AB3 GLN B 153 THR B 163 1 11 HELIX 13 AB4 ASP B 182 TYR B 185 5 4 SHEET 1 AA1 4 CYS A 21 SER A 22 0 SHEET 2 AA1 4 HIS A 32 MET A 38 -1 O THR A 36 N SER A 22 SHEET 3 AA1 4 VAL A 49 HIS A 55 -1 O PHE A 50 N ILE A 37 SHEET 4 AA1 4 LYS A 66 PHE A 69 -1 O LYS A 66 N HIS A 55 SHEET 1 AA2 3 VAL B 55 ASN B 57 0 SHEET 2 AA2 3 PRO B 47 ILE B 49 -1 N VAL B 48 O TYR B 56 SHEET 3 AA2 3 GLN B 84 PRO B 85 -1 O GLN B 84 N ILE B 49 SHEET 1 AA3 3 VAL B 150 ASP B 152 0 SHEET 2 AA3 3 PRO B 142 ILE B 144 -1 N VAL B 143 O TYR B 151 SHEET 3 AA3 3 VAL B 179 VAL B 180 -1 O VAL B 179 N ILE B 144 SHEET 1 AA4 2 LYS B 166 ASP B 167 0 SHEET 2 AA4 2 LYS B 171 LYS B 172 -1 O LYS B 171 N ASP B 167 LINK C THR B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N LEU B 35 1555 1555 1.33 CISPEP 1 GLY A 0 MET A 1 0 -2.15 CISPEP 2 ASP A 28 ASP A 29 0 21.02 CISPEP 3 TYR A 60 PRO A 61 0 4.08 CISPEP 4 GLU B 168 THR B 169 0 13.49 CRYST1 119.293 119.293 49.809 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008383 0.004840 0.000000 0.00000 SCALE2 0.000000 0.009680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020077 0.00000