HEADER HYDROLASE ACTIVATOR 19-NOV-14 4WZF TITLE CRYSTAL STRUCTURAL BASIS FOR RV0315, AN IMMUNOSTIMULATORY ANTIGEN AND TITLE 2 PSEUDO BETA-1, 3-GLUCANASE OF MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,3-BETA-GLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-1,3-GLUCANASE,POSSIBLE BETA-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: RV0315, RVBD_0315, LH57_01715, P425_00327; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS MYCOBACTERIUM TUBERCULOSIS, RV0315, GH16 LAMINARINASES, BETA-1, 3- KEYWDS 2 GLUCANASE, DC MATURATION, HYDROLASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR W.Y.DONG,Z.F.FU,G.Q.PENG REVDAT 2 20-MAR-24 4WZF 1 REMARK LINK REVDAT 1 09-DEC-15 4WZF 0 JRNL AUTH W.DONG,J.HUANG,Y.LI,Y.TAN,Z.SHEN,Y.SONG,D.WANG,S.XIAO, JRNL AUTH 2 H.CHEN,Z.F.FU,G.PENG JRNL TITL CRYSTAL STRUCTURAL BASIS FOR RV0315, AN IMMUNOSTIMULATORY JRNL TITL 2 ANTIGEN AND INACTIVE BETA-1,3-GLUCANASE OF MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF SCI REP V. 5 15073 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26469317 JRNL DOI 10.1038/SREP15073 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 61817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7860 - 4.7501 0.87 2453 126 0.2070 0.2447 REMARK 3 2 4.7501 - 3.7746 0.91 2500 119 0.1639 0.1960 REMARK 3 3 3.7746 - 3.2987 0.95 2609 143 0.1705 0.1761 REMARK 3 4 3.2987 - 2.9976 0.98 2667 139 0.1721 0.1828 REMARK 3 5 2.9976 - 2.7831 0.99 2701 140 0.1848 0.2195 REMARK 3 6 2.7831 - 2.6192 1.00 2719 159 0.1865 0.1896 REMARK 3 7 2.6192 - 2.4882 1.00 2696 145 0.1856 0.2077 REMARK 3 8 2.4882 - 2.3799 1.00 2712 152 0.1918 0.2135 REMARK 3 9 2.3799 - 2.2884 1.00 2714 148 0.1873 0.2578 REMARK 3 10 2.2884 - 2.2095 1.00 2675 143 0.1830 0.2549 REMARK 3 11 2.2095 - 2.1404 1.00 2703 163 0.1816 0.2105 REMARK 3 12 2.1404 - 2.0793 1.00 2746 133 0.1756 0.2245 REMARK 3 13 2.0793 - 2.0246 0.99 2687 153 0.1712 0.1967 REMARK 3 14 2.0246 - 1.9752 1.00 2703 116 0.1768 0.1989 REMARK 3 15 1.9752 - 1.9303 1.00 2670 139 0.1778 0.2440 REMARK 3 16 1.9303 - 1.8892 1.00 2736 144 0.1857 0.2209 REMARK 3 17 1.8892 - 1.8515 1.00 2696 160 0.1877 0.2095 REMARK 3 18 1.8515 - 1.8165 1.00 2698 137 0.1838 0.2139 REMARK 3 19 1.8165 - 1.7841 1.00 2652 156 0.1902 0.2227 REMARK 3 20 1.7841 - 1.7539 1.00 2744 131 0.1897 0.2641 REMARK 3 21 1.7539 - 1.7256 1.00 2691 127 0.1948 0.2319 REMARK 3 22 1.7256 - 1.6990 0.94 2549 123 0.2054 0.2242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3983 REMARK 3 ANGLE : 1.171 5448 REMARK 3 CHIRALITY : 0.050 513 REMARK 3 PLANARITY : 0.007 729 REMARK 3 DIHEDRAL : 13.520 1368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204717. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.699 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.22800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM PHOSPHATE MONOBASIC, 20% REMARK 280 PEG 3350, PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.56650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.92350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.56650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.92350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 MET A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 MET A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 MET A 11 REMARK 465 MET A 12 REMARK 465 MET A 13 REMARK 465 MET A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 PHE A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 PRO A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 THR A 28 REMARK 465 ALA A 29 REMARK 465 TRP A 30 REMARK 465 ALA A 31 REMARK 465 ASP A 32 REMARK 465 PRO A 33 REMARK 465 SER A 34 REMARK 465 ARG A 35 REMARK 465 PRO A 36 REMARK 465 ALA A 37 REMARK 465 ALA A 38 REMARK 465 PRO A 39 REMARK 465 ALA A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 42 REMARK 465 THR A 43 REMARK 465 PRO A 44 REMARK 465 ALA A 45 REMARK 465 PRO A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 PRO A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 ALA A 52 REMARK 465 THR A 53 REMARK 465 ILE A 242 REMARK 465 GLU A 243 REMARK 465 ASP A 244 REMARK 465 LEU A 245 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 MET B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 MET B 6 REMARK 465 ASP B 7 REMARK 465 ARG B 8 REMARK 465 ARG B 9 REMARK 465 ARG B 10 REMARK 465 MET B 11 REMARK 465 MET B 12 REMARK 465 MET B 13 REMARK 465 MET B 14 REMARK 465 ALA B 15 REMARK 465 GLY B 16 REMARK 465 PHE B 17 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 465 LEU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 ALA B 23 REMARK 465 LEU B 24 REMARK 465 PRO B 25 REMARK 465 ALA B 26 REMARK 465 PRO B 27 REMARK 465 THR B 28 REMARK 465 ALA B 29 REMARK 465 TRP B 30 REMARK 465 ALA B 31 REMARK 465 ASP B 32 REMARK 465 PRO B 33 REMARK 465 SER B 34 REMARK 465 ARG B 35 REMARK 465 PRO B 36 REMARK 465 ALA B 37 REMARK 465 ALA B 38 REMARK 465 PRO B 39 REMARK 465 ALA B 40 REMARK 465 GLY B 41 REMARK 465 PRO B 42 REMARK 465 THR B 43 REMARK 465 PRO B 44 REMARK 465 ALA B 45 REMARK 465 PRO B 46 REMARK 465 ALA B 47 REMARK 465 ALA B 48 REMARK 465 PRO B 49 REMARK 465 ALA B 50 REMARK 465 ALA B 51 REMARK 465 ALA B 52 REMARK 465 THR B 53 REMARK 465 ILE B 242 REMARK 465 GLU B 243 REMARK 465 ASP B 244 REMARK 465 LEU B 245 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 247 O HOH A 501 2.07 REMARK 500 O HOH B 760 O HOH B 795 2.13 REMARK 500 OE2 GLU A 247 O HOH A 502 2.14 REMARK 500 O ILE A 231 O HOH A 750 2.16 REMARK 500 O HOH B 712 O HOH B 813 2.17 REMARK 500 O HOH A 567 O HOH A 581 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 572 O HOH B 556 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 112 30.13 70.52 REMARK 500 ASN A 149 46.42 -96.36 REMARK 500 CYS A 150 25.26 -153.01 REMARK 500 ARG A 168 30.38 -150.38 REMARK 500 TRP A 252 98.71 -164.88 REMARK 500 ASP B 71 110.44 -38.26 REMARK 500 ASN B 149 44.51 -99.51 REMARK 500 CYS B 150 25.42 -150.38 REMARK 500 TRP B 156 77.32 -150.50 REMARK 500 ARG B 168 32.16 -149.05 REMARK 500 THR B 182 -40.75 -130.79 REMARK 500 TRP B 252 99.13 -163.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 785 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 818 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 825 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 61 O REMARK 620 2 SER A 112 O 88.5 REMARK 620 3 SER A 112 OG 73.4 74.5 REMARK 620 4 ASP A 289 O 79.2 88.5 147.9 REMARK 620 5 ASP A 289 OD1 155.1 90.4 129.9 76.0 REMARK 620 6 HOH A 502 O 91.2 177.9 103.4 93.5 90.7 REMARK 620 7 HOH A 531 O 135.3 106.0 70.4 141.5 68.6 72.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 61 O REMARK 620 2 SER B 112 O 88.0 REMARK 620 3 SER B 112 OG 74.1 76.0 REMARK 620 4 ASP B 289 O 79.6 87.0 149.0 REMARK 620 5 ASP B 289 OD1 154.8 88.3 128.8 75.2 REMARK 620 6 HOH B 507 O 91.4 178.8 104.8 91.9 91.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 DBREF 4WZF A 1 294 UNP O07242 O07242_MYCTU 1 294 DBREF 4WZF B 1 294 UNP O07242 O07242_MYCTU 1 294 SEQADV 4WZF GLY A 295 UNP O07242 EXPRESSION TAG SEQADV 4WZF SER A 296 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS A 297 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS A 298 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS A 299 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS A 300 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS A 301 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS A 302 UNP O07242 EXPRESSION TAG SEQADV 4WZF GLY B 295 UNP O07242 EXPRESSION TAG SEQADV 4WZF SER B 296 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS B 297 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS B 298 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS B 299 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS B 300 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS B 301 UNP O07242 EXPRESSION TAG SEQADV 4WZF HIS B 302 UNP O07242 EXPRESSION TAG SEQRES 1 A 302 MET LEU MET PRO GLU MET ASP ARG ARG ARG MET MET MET SEQRES 2 A 302 MET ALA GLY PHE GLY ALA LEU ALA ALA ALA LEU PRO ALA SEQRES 3 A 302 PRO THR ALA TRP ALA ASP PRO SER ARG PRO ALA ALA PRO SEQRES 4 A 302 ALA GLY PRO THR PRO ALA PRO ALA ALA PRO ALA ALA ALA SEQRES 5 A 302 THR GLY GLY LEU LEU PHE HIS ASP GLU PHE ASP GLY PRO SEQRES 6 A 302 ALA GLY SER VAL PRO ASP PRO SER LYS TRP GLN VAL SER SEQRES 7 A 302 ASN HIS ARG THR PRO ILE LYS ASN PRO VAL GLY PHE ASP SEQRES 8 A 302 ARG PRO GLN PHE PHE GLY GLN TYR ARG ASP SER ARG GLN SEQRES 9 A 302 ASN VAL PHE LEU ASP GLY ASN SER ASN LEU VAL LEU ARG SEQRES 10 A 302 ALA THR ARG GLU GLY ASN ARG TYR PHE GLY GLY LEU VAL SEQRES 11 A 302 HIS GLY LEU TRP ARG GLY GLY ILE GLY THR THR TRP GLU SEQRES 12 A 302 ALA ARG ILE LYS PHE ASN CYS LEU ALA PRO GLY MET TRP SEQRES 13 A 302 PRO ALA TRP TRP LEU SER ASN ASP ASP PRO GLY ARG SER SEQRES 14 A 302 GLY GLU ILE ASP LEU ILE GLU TRP TYR GLY ASN GLY THR SEQRES 15 A 302 TRP PRO SER GLY THR THR VAL HIS ALA ASN PRO ASP GLY SEQRES 16 A 302 THR ALA PHE GLU THR CYS PRO ILE GLY VAL ASP GLY GLY SEQRES 17 A 302 TRP HIS ASN TRP ARG VAL THR TRP ASN PRO SER GLY MET SEQRES 18 A 302 TYR PHE TRP LEU ASP TYR ALA ASP GLY ILE GLU PRO TYR SEQRES 19 A 302 PHE SER VAL PRO ALA THR GLY ILE GLU ASP LEU ASN GLU SEQRES 20 A 302 PRO ILE ARG GLU TRP PRO PHE ASN ASP PRO GLY TYR LYS SEQRES 21 A 302 VAL PHE PRO VAL LEU ASN LEU ALA VAL GLY GLY SER GLY SEQRES 22 A 302 GLY GLY ASP PRO ALA THR GLY SER TYR PRO GLN GLU MET SEQRES 23 A 302 LEU VAL ASP TRP VAL ARG VAL PHE GLY SER HIS HIS HIS SEQRES 24 A 302 HIS HIS HIS SEQRES 1 B 302 MET LEU MET PRO GLU MET ASP ARG ARG ARG MET MET MET SEQRES 2 B 302 MET ALA GLY PHE GLY ALA LEU ALA ALA ALA LEU PRO ALA SEQRES 3 B 302 PRO THR ALA TRP ALA ASP PRO SER ARG PRO ALA ALA PRO SEQRES 4 B 302 ALA GLY PRO THR PRO ALA PRO ALA ALA PRO ALA ALA ALA SEQRES 5 B 302 THR GLY GLY LEU LEU PHE HIS ASP GLU PHE ASP GLY PRO SEQRES 6 B 302 ALA GLY SER VAL PRO ASP PRO SER LYS TRP GLN VAL SER SEQRES 7 B 302 ASN HIS ARG THR PRO ILE LYS ASN PRO VAL GLY PHE ASP SEQRES 8 B 302 ARG PRO GLN PHE PHE GLY GLN TYR ARG ASP SER ARG GLN SEQRES 9 B 302 ASN VAL PHE LEU ASP GLY ASN SER ASN LEU VAL LEU ARG SEQRES 10 B 302 ALA THR ARG GLU GLY ASN ARG TYR PHE GLY GLY LEU VAL SEQRES 11 B 302 HIS GLY LEU TRP ARG GLY GLY ILE GLY THR THR TRP GLU SEQRES 12 B 302 ALA ARG ILE LYS PHE ASN CYS LEU ALA PRO GLY MET TRP SEQRES 13 B 302 PRO ALA TRP TRP LEU SER ASN ASP ASP PRO GLY ARG SER SEQRES 14 B 302 GLY GLU ILE ASP LEU ILE GLU TRP TYR GLY ASN GLY THR SEQRES 15 B 302 TRP PRO SER GLY THR THR VAL HIS ALA ASN PRO ASP GLY SEQRES 16 B 302 THR ALA PHE GLU THR CYS PRO ILE GLY VAL ASP GLY GLY SEQRES 17 B 302 TRP HIS ASN TRP ARG VAL THR TRP ASN PRO SER GLY MET SEQRES 18 B 302 TYR PHE TRP LEU ASP TYR ALA ASP GLY ILE GLU PRO TYR SEQRES 19 B 302 PHE SER VAL PRO ALA THR GLY ILE GLU ASP LEU ASN GLU SEQRES 20 B 302 PRO ILE ARG GLU TRP PRO PHE ASN ASP PRO GLY TYR LYS SEQRES 21 B 302 VAL PHE PRO VAL LEU ASN LEU ALA VAL GLY GLY SER GLY SEQRES 22 B 302 GLY GLY ASP PRO ALA THR GLY SER TYR PRO GLN GLU MET SEQRES 23 B 302 LEU VAL ASP TRP VAL ARG VAL PHE GLY SER HIS HIS HIS SEQRES 24 B 302 HIS HIS HIS HET CA A 401 1 HET EDO A 402 4 HET EDO A 403 4 HET CA B 401 1 HET EDO B 402 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 2(CA 2+) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *659(H2 O) HELIX 1 AA1 VAL A 88 PHE A 96 5 9 HELIX 2 AA2 ASP A 276 GLY A 280 5 5 HELIX 3 AA3 VAL B 88 PHE B 96 5 9 HELIX 4 AA4 ASP B 276 GLY B 280 5 5 SHEET 1 AA1 4 TRP A 75 VAL A 77 0 SHEET 2 AA1 4 ARG A 124 GLY A 132 -1 O HIS A 131 N GLN A 76 SHEET 3 AA1 4 LYS A 260 VAL A 269 -1 O PRO A 263 N GLY A 132 SHEET 4 AA1 4 GLY A 136 GLY A 137 -1 N GLY A 136 O VAL A 261 SHEET 1 AA2 3 TRP A 75 VAL A 77 0 SHEET 2 AA2 3 ARG A 124 GLY A 132 -1 O HIS A 131 N GLN A 76 SHEET 3 AA2 3 GLN A 98 TYR A 99 1 N GLN A 98 O GLY A 127 SHEET 1 AA3 4 GLN A 98 TYR A 99 0 SHEET 2 AA3 4 ARG A 124 GLY A 132 1 O GLY A 127 N GLN A 98 SHEET 3 AA3 4 LEU A 114 GLU A 121 -1 N GLU A 121 O ARG A 124 SHEET 4 AA3 4 VAL A 106 LEU A 108 -1 N PHE A 107 O VAL A 115 SHEET 1 AA4 4 VAL A 106 LEU A 108 0 SHEET 2 AA4 4 LEU A 114 GLU A 121 -1 O VAL A 115 N PHE A 107 SHEET 3 AA4 4 GLN A 284 PHE A 294 -1 O MET A 286 N LEU A 116 SHEET 4 AA4 4 LEU A 56 ASP A 60 -1 N LEU A 57 O VAL A 293 SHEET 1 AA512 PHE A 198 PRO A 202 0 SHEET 2 AA512 GLY A 186 HIS A 190 -1 N THR A 187 O CYS A 201 SHEET 3 AA512 GLY A 170 GLU A 176 -1 N GLU A 171 O HIS A 190 SHEET 4 AA512 MET A 155 ASN A 163 -1 N LEU A 161 O ILE A 172 SHEET 5 AA512 LYS A 260 VAL A 269 -1 O VAL A 264 N TRP A 160 SHEET 6 AA512 ARG A 124 GLY A 132 -1 N GLY A 132 O PRO A 263 SHEET 7 AA512 LEU A 114 GLU A 121 -1 N GLU A 121 O ARG A 124 SHEET 8 AA512 GLN A 284 PHE A 294 -1 O MET A 286 N LEU A 116 SHEET 9 AA512 THR A 140 ASN A 149 -1 N LYS A 147 O LEU A 287 SHEET 10 AA512 TRP A 209 ASN A 217 -1 O TRP A 216 N THR A 140 SHEET 11 AA512 GLY A 220 LEU A 225 -1 O GLY A 220 N ASN A 217 SHEET 12 AA512 PHE A 235 PRO A 238 -1 O VAL A 237 N MET A 221 SHEET 1 AA6 7 PHE B 198 PRO B 202 0 SHEET 2 AA6 7 GLY B 186 HIS B 190 -1 N THR B 187 O CYS B 201 SHEET 3 AA6 7 GLY B 170 GLU B 176 -1 N ASP B 173 O THR B 188 SHEET 4 AA6 7 MET B 155 ASN B 163 -1 N LEU B 161 O ILE B 172 SHEET 5 AA6 7 PHE B 262 VAL B 269 -1 O VAL B 264 N TRP B 160 SHEET 6 AA6 7 ARG B 124 GLY B 132 -1 N GLY B 132 O PRO B 263 SHEET 7 AA6 7 TRP B 75 VAL B 77 -1 N GLN B 76 O HIS B 131 SHEET 1 AA7 3 TRP B 75 VAL B 77 0 SHEET 2 AA7 3 ARG B 124 GLY B 132 -1 O HIS B 131 N GLN B 76 SHEET 3 AA7 3 GLN B 98 TYR B 99 1 N GLN B 98 O GLY B 127 SHEET 1 AA8 4 GLN B 98 TYR B 99 0 SHEET 2 AA8 4 ARG B 124 GLY B 132 1 O GLY B 127 N GLN B 98 SHEET 3 AA8 4 LEU B 114 GLU B 121 -1 N GLU B 121 O ARG B 124 SHEET 4 AA8 4 VAL B 106 LEU B 108 -1 N PHE B 107 O VAL B 115 SHEET 1 AA9 4 VAL B 106 LEU B 108 0 SHEET 2 AA9 4 LEU B 114 GLU B 121 -1 O VAL B 115 N PHE B 107 SHEET 3 AA9 4 GLN B 284 GLY B 295 -1 O VAL B 288 N LEU B 114 SHEET 4 AA9 4 LEU B 56 ASP B 60 -1 N PHE B 58 O VAL B 293 SHEET 1 AB112 PHE B 198 PRO B 202 0 SHEET 2 AB112 GLY B 186 HIS B 190 -1 N THR B 187 O CYS B 201 SHEET 3 AB112 GLY B 170 GLU B 176 -1 N ASP B 173 O THR B 188 SHEET 4 AB112 MET B 155 ASN B 163 -1 N LEU B 161 O ILE B 172 SHEET 5 AB112 PHE B 262 VAL B 269 -1 O VAL B 264 N TRP B 160 SHEET 6 AB112 ARG B 124 GLY B 132 -1 N GLY B 132 O PRO B 263 SHEET 7 AB112 LEU B 114 GLU B 121 -1 N GLU B 121 O ARG B 124 SHEET 8 AB112 GLN B 284 GLY B 295 -1 O VAL B 288 N LEU B 114 SHEET 9 AB112 THR B 140 ASN B 149 -1 N LYS B 147 O LEU B 287 SHEET 10 AB112 TRP B 209 ASN B 217 -1 O TRP B 216 N THR B 140 SHEET 11 AB112 GLY B 220 LEU B 225 -1 O GLY B 220 N ASN B 217 SHEET 12 AB112 PHE B 235 PRO B 238 -1 O VAL B 237 N MET B 221 LINK O GLU A 61 CA CA A 401 1555 1555 2.42 LINK O SER A 112 CA CA A 401 1555 1555 2.31 LINK OG SER A 112 CA CA A 401 1555 1555 2.33 LINK O ASP A 289 CA CA A 401 1555 1555 2.35 LINK OD1 ASP A 289 CA CA A 401 1555 1555 2.22 LINK CA CA A 401 O HOH A 502 1555 4545 2.27 LINK CA CA A 401 O HOH A 531 1555 1555 2.63 LINK O GLU B 61 CA CA B 401 1555 1555 2.40 LINK O SER B 112 CA CA B 401 1555 1555 2.31 LINK OG SER B 112 CA CA B 401 1555 1555 2.29 LINK O ASP B 289 CA CA B 401 1555 1555 2.37 LINK OD1 ASP B 289 CA CA B 401 1555 1555 2.25 LINK CA CA B 401 O HOH B 507 1555 1555 2.32 CISPEP 1 GLU A 247 PRO A 248 0 -2.15 CISPEP 2 TYR A 282 PRO A 283 0 5.53 CISPEP 3 GLU B 247 PRO B 248 0 -1.77 CISPEP 4 TYR B 282 PRO B 283 0 7.17 SITE 1 AC1 5 GLU A 61 SER A 112 ASP A 289 HOH A 502 SITE 2 AC1 5 HOH A 531 SITE 1 AC2 8 TRP A 156 ALA A 158 TRP A 160 GLU A 171 SITE 2 AC2 8 GLU A 176 HOH A 618 HOH A 703 HOH A 710 SITE 1 AC3 4 LEU A 129 HIS A 131 HOH A 728 HOH A 761 SITE 1 AC4 4 GLU B 61 SER B 112 ASP B 289 HOH B 507 SITE 1 AC5 8 TRP B 156 ALA B 158 TRP B 160 GLU B 171 SITE 2 AC5 8 GLU B 176 HOH B 607 HOH B 675 HOH B 730 CRYST1 135.133 65.847 67.449 90.00 105.17 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007400 0.000000 0.002006 0.00000 SCALE2 0.000000 0.015187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015361 0.00000