HEADER VIRAL PROTEIN 20-NOV-14 4WZL TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 IN COMPLEX TITLE 2 WITH HBGA TYPE LEA (TRIGLYCAN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-530); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII-4/SAGA4/2006/JP; SOURCE 3 ORGANISM_TAXID: 546981; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS VIRAL CAPSID PROTEIN, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 4 29-JUL-20 4WZL 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 04-MAR-15 4WZL 1 SHEET REVDAT 2 04-FEB-15 4WZL 1 JRNL REVDAT 1 17-DEC-14 4WZL 0 JRNL AUTH B.K.SINGH,M.M.LEUTHOLD,G.S.HANSMAN JRNL TITL HUMAN NOROVIRUSES' FONDNESS FOR HISTO-BLOOD GROUP ANTIGENS. JRNL REF J.VIROL. V. 89 2024 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25428879 JRNL DOI 10.1128/JVI.02968-14 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 65702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4804 - 4.8323 0.93 2675 142 0.1842 0.2028 REMARK 3 2 4.8323 - 3.8364 0.98 2740 144 0.1352 0.1747 REMARK 3 3 3.8364 - 3.3517 0.98 2713 143 0.1440 0.1502 REMARK 3 4 3.3517 - 3.0453 0.99 2739 144 0.1483 0.1694 REMARK 3 5 3.0453 - 2.8271 0.99 2761 144 0.1553 0.1592 REMARK 3 6 2.8271 - 2.6604 0.99 2745 145 0.1626 0.1745 REMARK 3 7 2.6604 - 2.5272 0.97 2706 142 0.1592 0.2584 REMARK 3 8 2.5272 - 2.4172 0.98 2706 143 0.1599 0.1725 REMARK 3 9 2.4172 - 2.3242 0.99 2742 143 0.1524 0.1922 REMARK 3 10 2.3242 - 2.2440 0.99 2721 144 0.1585 0.1867 REMARK 3 11 2.2440 - 2.1738 0.99 2717 143 0.1605 0.1855 REMARK 3 12 2.1738 - 2.1117 0.99 2745 144 0.1746 0.1942 REMARK 3 13 2.1117 - 2.0561 0.98 2715 143 0.1750 0.2077 REMARK 3 14 2.0561 - 2.0059 0.96 2656 137 0.1799 0.1893 REMARK 3 15 2.0059 - 1.9603 0.98 2670 141 0.1818 0.1954 REMARK 3 16 1.9603 - 1.9186 0.98 2728 143 0.1933 0.2334 REMARK 3 17 1.9186 - 1.8802 0.99 2696 141 0.1999 0.2499 REMARK 3 18 1.8802 - 1.8447 0.99 2738 144 0.2129 0.2488 REMARK 3 19 1.8447 - 1.8118 0.99 2712 143 0.2155 0.2358 REMARK 3 20 1.8118 - 1.7811 0.99 2715 143 0.2215 0.2289 REMARK 3 21 1.7811 - 1.7524 0.99 2751 144 0.2413 0.2562 REMARK 3 22 1.7524 - 1.7254 0.98 2657 139 0.2561 0.3078 REMARK 3 23 1.7254 - 1.7000 0.96 2674 141 0.2666 0.3097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5077 REMARK 3 ANGLE : 1.048 6926 REMARK 3 CHIRALITY : 0.039 774 REMARK 3 PLANARITY : 0.005 906 REMARK 3 DIHEDRAL : 12.773 1849 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 179.4605 -26.5894 37.4176 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.1567 REMARK 3 T33: 0.0501 T12: 0.0365 REMARK 3 T13: 0.0219 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.7121 L22: 0.0999 REMARK 3 L33: 0.2902 L12: -0.1152 REMARK 3 L13: 0.1067 L23: -0.0856 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: -0.2358 S13: -0.1359 REMARK 3 S21: 0.0920 S22: 0.0139 S23: 0.0061 REMARK 3 S31: 0.0076 S32: -0.0297 S33: 0.2016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 170.1168 -8.5633 36.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.1001 REMARK 3 T33: 0.0488 T12: 0.0000 REMARK 3 T13: -0.0139 T23: -0.0935 REMARK 3 L TENSOR REMARK 3 L11: 0.3799 L22: 0.6131 REMARK 3 L33: 0.6002 L12: -0.1565 REMARK 3 L13: 0.1008 L23: -0.2391 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.2465 S13: 0.2153 REMARK 3 S21: 0.2150 S22: 0.1182 S23: 0.3489 REMARK 3 S31: -0.4811 S32: -0.0525 S33: 0.2823 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 184.6247 -29.4082 42.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.2124 REMARK 3 T33: 0.1130 T12: 0.0248 REMARK 3 T13: -0.0389 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 0.5794 L22: 0.0795 REMARK 3 L33: 0.3506 L12: -0.0233 REMARK 3 L13: -0.1252 L23: -0.0440 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.4418 S13: -0.1375 REMARK 3 S21: 0.1661 S22: 0.0337 S23: -0.0115 REMARK 3 S31: 0.1064 S32: 0.1138 S33: 0.0556 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 501 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 193.8272 -38.2649 41.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.1653 REMARK 3 T33: 0.1945 T12: 0.0339 REMARK 3 T13: 0.0028 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 0.3161 L22: 0.2821 REMARK 3 L33: 0.2909 L12: 0.1423 REMARK 3 L13: -0.2347 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: -0.2321 S13: -0.1226 REMARK 3 S21: 0.1770 S22: 0.0179 S23: -0.1546 REMARK 3 S31: 0.0838 S32: 0.0957 S33: 0.1100 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 172.4820 -31.9016 21.5781 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: -0.1025 REMARK 3 T33: 0.1640 T12: 0.0295 REMARK 3 T13: -0.0504 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 0.1681 L22: 0.1261 REMARK 3 L33: 0.1703 L12: 0.0182 REMARK 3 L13: 0.1598 L23: -0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.1294 S12: -0.0411 S13: -0.2764 REMARK 3 S21: 0.0211 S22: -0.0148 S23: 0.0056 REMARK 3 S31: 0.2799 S32: 0.0117 S33: 0.2396 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 248 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 171.2905 -25.7497 7.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.1516 REMARK 3 T33: 0.0845 T12: 0.0096 REMARK 3 T13: -0.0439 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.5576 L22: 0.2174 REMARK 3 L33: -0.0027 L12: -0.0699 REMARK 3 L13: 0.0072 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: 0.4228 S13: -0.0121 REMARK 3 S21: -0.2097 S22: 0.0119 S23: 0.0003 REMARK 3 S31: -0.0048 S32: -0.2086 S33: 0.0529 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 186.0269 -21.7950 17.9477 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: -0.1107 REMARK 3 T33: 0.1458 T12: 0.0024 REMARK 3 T13: -0.0246 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 0.0611 L22: 0.1603 REMARK 3 L33: 0.3053 L12: -0.0435 REMARK 3 L13: -0.0242 L23: -0.1815 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: 0.0112 S13: 0.0456 REMARK 3 S21: 0.0569 S22: -0.0874 S23: -0.1159 REMARK 3 S31: -0.1397 S32: 0.1435 S33: -0.1680 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 192.7264 -13.7177 15.4944 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: -0.0949 REMARK 3 T33: 0.2296 T12: -0.0220 REMARK 3 T13: 0.0695 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 0.0414 L22: 0.2351 REMARK 3 L33: 0.1292 L12: -0.0157 REMARK 3 L13: 0.0350 L23: 0.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0404 S13: -0.0393 REMARK 3 S21: 0.0221 S22: 0.0577 S23: -0.2620 REMARK 3 S31: -0.0853 S32: 0.1317 S33: 0.0317 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 324 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 185.0962 -7.2722 22.5627 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: -0.0113 REMARK 3 T33: 0.1056 T12: -0.0708 REMARK 3 T13: 0.0155 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 0.0327 L22: 0.1327 REMARK 3 L33: 0.0288 L12: -0.0041 REMARK 3 L13: -0.0285 L23: 0.0348 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: -0.1128 S13: 0.1581 REMARK 3 S21: -0.0505 S22: -0.0616 S23: -0.0368 REMARK 3 S31: -0.1267 S32: 0.0754 S33: 0.0152 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 353 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 183.1398 -5.9709 16.3628 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: -0.0755 REMARK 3 T33: 0.1673 T12: -0.0853 REMARK 3 T13: 0.0266 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.2717 L22: 0.2216 REMARK 3 L33: 0.6094 L12: 0.1300 REMARK 3 L13: 0.0301 L23: -0.0520 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.1325 S13: 0.2735 REMARK 3 S21: -0.1388 S22: 0.0395 S23: 0.0211 REMARK 3 S31: -0.4137 S32: -0.0879 S33: -0.0122 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 400 THROUGH 419 ) REMARK 3 ORIGIN FOR THE GROUP (A): 182.4262 -17.1190 3.7327 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.0909 REMARK 3 T33: 0.0713 T12: 0.0181 REMARK 3 T13: 0.0609 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.1680 L22: 0.1154 REMARK 3 L33: 0.0938 L12: -0.0280 REMARK 3 L13: 0.0754 L23: 0.0639 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 0.1346 S13: 0.0583 REMARK 3 S21: -0.1473 S22: -0.0129 S23: -0.1273 REMARK 3 S31: -0.0707 S32: -0.0198 S33: -0.0840 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 420 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 171.2653 -26.4888 13.8291 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0001 REMARK 3 T33: 0.0671 T12: 0.0464 REMARK 3 T13: 0.0306 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.2453 L22: 0.2414 REMARK 3 L33: 0.5318 L12: -0.1007 REMARK 3 L13: 0.0058 L23: 0.1833 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: 0.1277 S13: -0.0266 REMARK 3 S21: -0.1431 S22: -0.0146 S23: -0.0277 REMARK 3 S31: -0.1434 S32: -0.2128 S33: -0.1370 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 465 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): 167.2910 -43.0206 16.5518 REMARK 3 T TENSOR REMARK 3 T11: 0.1052 T22: 0.0961 REMARK 3 T33: 0.2730 T12: -0.0206 REMARK 3 T13: -0.0009 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 0.0648 L22: 0.0890 REMARK 3 L33: 0.2616 L12: 0.0555 REMARK 3 L13: 0.1151 L23: 0.0524 REMARK 3 S TENSOR REMARK 3 S11: 0.1501 S12: -0.0168 S13: -0.0725 REMARK 3 S21: 0.1039 S22: 0.0044 S23: -0.0830 REMARK 3 S31: 0.1971 S32: 0.0317 S33: 0.3176 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 484 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 165.4971 -38.1456 11.3482 REMARK 3 T TENSOR REMARK 3 T11: -0.1423 T22: 0.0875 REMARK 3 T33: 0.1993 T12: -0.1109 REMARK 3 T13: -0.0316 T23: -0.1071 REMARK 3 L TENSOR REMARK 3 L11: 0.1455 L22: 0.0759 REMARK 3 L33: 0.0679 L12: 0.0841 REMARK 3 L13: -0.0130 L23: -0.0466 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.0224 S13: -0.0725 REMARK 3 S21: 0.0136 S22: 0.0100 S23: 0.1923 REMARK 3 S31: 0.0885 S32: -0.0399 S33: 0.0975 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 501 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 162.7303 -38.2660 12.4819 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.2508 REMARK 3 T33: 0.2118 T12: -0.0249 REMARK 3 T13: -0.0528 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.1201 L22: 0.0775 REMARK 3 L33: 0.0903 L12: 0.0093 REMARK 3 L13: 0.0136 L23: 0.0282 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: 0.2572 S13: -0.1719 REMARK 3 S21: -0.1036 S22: 0.0231 S23: 0.1010 REMARK 3 S31: 0.0818 S32: -0.0869 S33: 0.0469 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2906 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97250 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82519 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 49.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.4.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PH 6.9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.43500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.43500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 763 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 759 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 493 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 302 O HOH A 948 2.07 REMARK 500 ND2 ASN B 302 O HOH B 944 2.08 REMARK 500 O4 NDG D 1 C2 FUC D 3 2.15 REMARK 500 O HOH A 946 O HOH B 841 2.15 REMARK 500 O4 NDG C 1 C2 FUC C 3 2.16 REMARK 500 O HOH A 836 O HOH B 968 2.16 REMARK 500 O PHE B 257 O HOH B 780 2.18 REMARK 500 O PHE A 257 O HOH A 783 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 254 26.00 -143.74 REMARK 500 GLN A 260 53.18 -142.83 REMARK 500 ASN A 373 -6.99 -149.00 REMARK 500 SER A 442 146.72 -178.54 REMARK 500 VAL A 521 -150.13 -127.02 REMARK 500 SER B 254 26.01 -143.60 REMARK 500 GLN B 260 53.16 -142.48 REMARK 500 ASN B 373 -7.34 -147.93 REMARK 500 SER B 442 146.70 -177.80 REMARK 500 VAL B 521 -150.04 -127.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WZK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 IN REMARK 900 COMPLEX WITH HBGA TYPE H2 (TRIGLYCAN) REMARK 900 RELATED ID: 4WZE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 IN REMARK 900 COMPLEX WITH HBGA TYPE LEY (TETRAGLYCAN) REMARK 900 RELATED ID: 4OOX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 DBREF 4WZL A 225 530 UNP B5BTR7 B5BTR7_9CALI 225 530 DBREF 4WZL B 225 530 UNP B5BTR7 B5BTR7_9CALI 225 530 SEQADV 4WZL GLY A 223 UNP B5BTR7 EXPRESSION TAG SEQADV 4WZL SER A 224 UNP B5BTR7 EXPRESSION TAG SEQADV 4WZL GLY B 223 UNP B5BTR7 EXPRESSION TAG SEQADV 4WZL SER B 224 UNP B5BTR7 EXPRESSION TAG SEQRES 1 A 308 GLY SER LYS PRO PHE THR VAL PRO ILE LEU THR VAL GLU SEQRES 2 A 308 GLU MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS SEQRES 3 A 308 LEU PHE THR GLY PRO SER GLY ALA PHE VAL VAL GLN PRO SEQRES 4 A 308 GLN ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY SEQRES 5 A 308 THR THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG SEQRES 6 A 308 GLY ASP VAL THR HIS ILE ALA GLY SER ARG ASN TYR THR SEQRES 7 A 308 MET ASN LEU ALA SER LEU ASN TRP ASN ASN TYR ASP PRO SEQRES 8 A 308 THR GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE SEQRES 9 A 308 VAL GLY LYS ILE GLN GLY LEU LEU THR GLN THR THR LYS SEQRES 10 A 308 GLY ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL TYR SEQRES 11 A 308 THR GLY SER ALA PRO PHE THR PRO LYS LEU GLY SER VAL SEQRES 12 A 308 GLN PHE SER THR ASP THR GLU ASN ASP PHE GLU THR HIS SEQRES 13 A 308 GLN ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP SEQRES 14 A 308 GLY SER THR THR HIS ARG ASN GLU PRO GLN GLN TRP VAL SEQRES 15 A 308 LEU PRO SER TYR SER GLY ARG ASN VAL HIS ASN VAL HIS SEQRES 16 A 308 LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN SEQRES 17 A 308 LEU LEU PHE PHE ARG SER THR MET PRO GLY CYS SER GLY SEQRES 18 A 308 TYR PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN GLU SEQRES 19 A 308 TRP VAL GLN HIS PHE TYR GLN GLU ALA ALA PRO ALA GLN SEQRES 20 A 308 SER ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR SEQRES 21 A 308 GLY ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY SEQRES 22 A 308 TYR VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL SEQRES 23 A 308 ILE PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL SEQRES 24 A 308 ASN GLN PHE TYR THR LEU ALA PRO MET SEQRES 1 B 308 GLY SER LYS PRO PHE THR VAL PRO ILE LEU THR VAL GLU SEQRES 2 B 308 GLU MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS SEQRES 3 B 308 LEU PHE THR GLY PRO SER GLY ALA PHE VAL VAL GLN PRO SEQRES 4 B 308 GLN ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY SEQRES 5 B 308 THR THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG SEQRES 6 B 308 GLY ASP VAL THR HIS ILE ALA GLY SER ARG ASN TYR THR SEQRES 7 B 308 MET ASN LEU ALA SER LEU ASN TRP ASN ASN TYR ASP PRO SEQRES 8 B 308 THR GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE SEQRES 9 B 308 VAL GLY LYS ILE GLN GLY LEU LEU THR GLN THR THR LYS SEQRES 10 B 308 GLY ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL TYR SEQRES 11 B 308 THR GLY SER ALA PRO PHE THR PRO LYS LEU GLY SER VAL SEQRES 12 B 308 GLN PHE SER THR ASP THR GLU ASN ASP PHE GLU THR HIS SEQRES 13 B 308 GLN ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP SEQRES 14 B 308 GLY SER THR THR HIS ARG ASN GLU PRO GLN GLN TRP VAL SEQRES 15 B 308 LEU PRO SER TYR SER GLY ARG ASN VAL HIS ASN VAL HIS SEQRES 16 B 308 LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN SEQRES 17 B 308 LEU LEU PHE PHE ARG SER THR MET PRO GLY CYS SER GLY SEQRES 18 B 308 TYR PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN GLU SEQRES 19 B 308 TRP VAL GLN HIS PHE TYR GLN GLU ALA ALA PRO ALA GLN SEQRES 20 B 308 SER ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR SEQRES 21 B 308 GLY ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY SEQRES 22 B 308 TYR VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL SEQRES 23 B 308 ILE PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL SEQRES 24 B 308 ASN GLN PHE TYR THR LEU ALA PRO MET HET NDG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET NDG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET ACT A 605 4 HET ACT A 606 4 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HET EDO B 605 4 HET ACT B 606 4 HET ACT B 607 4 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NDG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 EDO 9(C2 H6 O2) FORMUL 9 ACT 4(C2 H3 O2 1-) FORMUL 18 HOH *567(H2 O) HELIX 1 AA1 THR A 233 MET A 237 5 5 HELIX 2 AA2 SER A 279 ILE A 283 5 5 HELIX 3 AA3 THR A 359 LEU A 362 5 4 HELIX 4 AA4 PRO A 454 ALA A 465 1 12 HELIX 5 AA5 THR B 233 MET B 237 5 5 HELIX 6 AA6 THR B 359 LEU B 362 5 4 HELIX 7 AA7 PRO B 454 ALA B 465 1 12 HELIX 8 2 GLN B 455 GLU B 464 1 10 HELIX 9 1 GLN A 455 GLU A 464 1 10 SHEET 1 26 1 VAL B 472 ASN B 479 0 SHEET 1 1 1 LYS A 248 GLY A 252 0 SHEET 1 2 1 PHE A 286 HIS A 292 0 SHEET 1 3 1 ASN A 298 LEU A 303 0 SHEET 1 4 1 LYS A 329 THR A 337 0 SHEET 1 5 1 THR A 344 TYR A 352 0 SHEET 1 6 1 SER A 364 THR A 369 0 SHEET 1 7 1 THR A 381 ILE A 389 0 SHEET 1 8 1 GLU A 429 THR A 437 0 SHEET 1 9 1 GLY A 440 GLY A 443 0 SHEET 1 10 1 ASP A 448 CYS A 451 0 SHEET 1 11 1 VAL A 472 ASN A 479 0 SHEET 1 12 1 ARG A 484 HIS A 492 0 SHEET 1 13 1 TYR A 496 ALA A 500 0 SHEET 1 14 1 HIS A 505 ASP A 506 0 SHEET 1 15 1 TYR A 514 VAL A 521 0 SHEET 1 16 1 LYS B 248 GLY B 252 0 SHEET 1 17 1 PHE B 286 HIS B 292 0 SHEET 1 18 1 ASN B 298 LEU B 303 0 SHEET 1 19 1 LYS B 329 THR B 337 0 SHEET 1 20 1 THR B 344 TYR B 352 0 SHEET 1 21 1 SER B 364 THR B 369 0 SHEET 1 22 1 THR B 381 ILE B 389 0 SHEET 1 23 1 GLU B 429 THR B 437 0 SHEET 1 24 1 GLY B 440 GLY B 443 0 SHEET 1 25 1 ASP B 448 CYS B 451 0 SHEET 1 27 1 ARG B 484 HIS B 492 0 SHEET 1 28 1 TYR B 496 ALA B 500 0 SHEET 1 29 1 HIS B 505 ASP B 506 0 SHEET 1 30 1 TYR B 514 VAL B 521 0 LINK O3 NDG C 1 C1 GAL C 2 1555 1555 1.44 LINK O4 NDG C 1 C1 FUC C 3 1555 1555 1.54 LINK O3 NDG D 1 C1 GAL D 2 1555 1555 1.44 LINK O4 NDG D 1 C1 FUC D 3 1555 1555 1.53 CISPEP 1 GLU A 399 PRO A 400 0 -4.30 CISPEP 2 GLU B 399 PRO B 400 0 -4.75 CRYST1 96.870 58.830 124.440 90.00 119.80 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010323 0.000000 0.005912 0.00000 SCALE2 0.000000 0.016998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009261 0.00000