HEADER DNA BINDING PROTEIN, RNA BINDING PROTEIN20-NOV-14 4WZW TITLE CRYSTAL STRUCTURE OF HUMAN PUF-A IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUMILIO DOMAIN-CONTAINING PROTEIN KIAA0020; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HBV X-TRANSACTIVATED GENE 5 PROTEIN,HBV XAG-TRANSACTIVATED COMPND 5 PROTEIN 5,MINOR HISTOCOMPATIBILITY ANTIGEN HA-8,HLA-HA8,PUF-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*G)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(P*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*C)-3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0020, XTP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS PUMILIO REPEAT PROTEIN, DNA BINDING PROTEIN, RNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.QIU,T.M.T.HALL REVDAT 4 27-SEP-23 4WZW 1 REMARK REVDAT 3 27-NOV-19 4WZW 1 SOURCE JRNL REMARK REVDAT 2 14-JAN-15 4WZW 1 JRNL REVDAT 1 31-DEC-14 4WZW 0 JRNL AUTH C.QIU,K.L.MCCANN,R.N.WINE,S.J.BASERGA,T.M.HALL JRNL TITL A DIVERGENT PUMILIO REPEAT PROTEIN FAMILY FOR PRE-RRNA JRNL TITL 2 PROCESSING AND MRNA LOCALIZATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 18554 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 25512524 JRNL DOI 10.1073/PNAS.1407634112 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 14395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1225 - 6.3547 0.99 1462 164 0.1958 0.2179 REMARK 3 2 6.3547 - 5.0457 1.00 1382 153 0.2332 0.2704 REMARK 3 3 5.0457 - 4.4084 0.99 1330 148 0.1907 0.2397 REMARK 3 4 4.4084 - 4.0055 0.99 1329 149 0.2106 0.2396 REMARK 3 5 4.0055 - 3.7185 0.99 1300 146 0.2199 0.3064 REMARK 3 6 3.7185 - 3.4994 0.99 1290 142 0.2334 0.2778 REMARK 3 7 3.4994 - 3.3242 0.98 1284 144 0.2610 0.3341 REMARK 3 8 3.3242 - 3.1795 0.97 1264 139 0.2575 0.3621 REMARK 3 9 3.1795 - 3.0571 0.93 1204 132 0.3072 0.3333 REMARK 3 10 3.0571 - 2.9516 0.85 1107 126 0.3274 0.4015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4778 REMARK 3 ANGLE : 0.641 6562 REMARK 3 CHIRALITY : 0.041 759 REMARK 3 PLANARITY : 0.003 720 REMARK 3 DIHEDRAL : 15.976 1868 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2651 18.6553 -15.1776 REMARK 3 T TENSOR REMARK 3 T11: 0.3823 T22: 1.0454 REMARK 3 T33: 0.7055 T12: 0.1416 REMARK 3 T13: -0.0632 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 8.7189 L22: 2.5674 REMARK 3 L33: 2.6704 L12: -1.1377 REMARK 3 L13: 1.5719 L23: -0.9101 REMARK 3 S TENSOR REMARK 3 S11: 0.2238 S12: 0.2207 S13: 0.3048 REMARK 3 S21: -0.0668 S22: -0.3305 S23: 0.3330 REMARK 3 S31: -0.1157 S32: -0.5743 S33: 0.0849 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 553 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2903 19.7955 -34.3571 REMARK 3 T TENSOR REMARK 3 T11: 0.3540 T22: 0.9771 REMARK 3 T33: 0.6207 T12: 0.2641 REMARK 3 T13: -0.0074 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 0.9868 L22: 0.7940 REMARK 3 L33: 5.4899 L12: 0.4897 REMARK 3 L13: 0.0333 L23: -1.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.1624 S13: -0.0966 REMARK 3 S21: -0.1700 S22: -0.2954 S23: -0.2311 REMARK 3 S31: 0.1508 S32: 0.7877 S33: 0.2063 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 554 THROUGH 645 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9230 48.3437 -59.1542 REMARK 3 T TENSOR REMARK 3 T11: 1.2035 T22: 1.4449 REMARK 3 T33: 0.7321 T12: -0.4649 REMARK 3 T13: -0.2951 T23: 0.2407 REMARK 3 L TENSOR REMARK 3 L11: 5.5704 L22: 5.6037 REMARK 3 L33: 8.2262 L12: -0.5922 REMARK 3 L13: 1.7202 L23: -2.4040 REMARK 3 S TENSOR REMARK 3 S11: -0.6181 S12: -0.4449 S13: 0.3503 REMARK 3 S21: 1.1251 S22: -0.3006 S23: -0.9927 REMARK 3 S31: -1.9025 S32: 1.3311 S33: 1.0358 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2047 37.7846 -30.5460 REMARK 3 T TENSOR REMARK 3 T11: 1.3412 T22: 1.3282 REMARK 3 T33: 2.9361 T12: -0.0089 REMARK 3 T13: 0.1084 T23: 0.2300 REMARK 3 L TENSOR REMARK 3 L11: 6.3921 L22: 3.2721 REMARK 3 L33: 4.2701 L12: 1.1360 REMARK 3 L13: -1.8422 L23: -1.2671 REMARK 3 S TENSOR REMARK 3 S11: -0.3511 S12: 0.7222 S13: 1.9549 REMARK 3 S21: -0.4998 S22: 0.4944 S23: 0.9890 REMARK 3 S31: -1.4266 S32: -0.2791 S33: -0.1689 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9002 35.8957 -31.4412 REMARK 3 T TENSOR REMARK 3 T11: 1.6119 T22: 1.3190 REMARK 3 T33: 1.7794 T12: 0.0920 REMARK 3 T13: 0.2526 T23: -0.2134 REMARK 3 L TENSOR REMARK 3 L11: 5.8223 L22: 1.5726 REMARK 3 L33: 1.6599 L12: 2.2646 REMARK 3 L13: 0.5427 L23: -0.1129 REMARK 3 S TENSOR REMARK 3 S11: -0.8626 S12: 0.2720 S13: -0.7030 REMARK 3 S21: -0.1584 S22: -0.1646 S23: 0.3588 REMARK 3 S31: 0.1172 S32: 0.3395 S33: 0.8562 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4WZR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG3350, 0.2 M NH4OAC, 0.1 M BIS REMARK 280 -TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.91550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 205.37325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.45775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 136.91550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.45775 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 205.37325 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE ACTUAL DNA SEQUENCE USED FOR CRYSTALLIZATION IS: MOL.B: 5'- REMARK 400 AAGGGCATGTCCGGGCATGTCCAA AND MOL.C: 5'-TTGGACATGCCCGGACATGCCCTT. REMARK 400 THE PROTEIN-DNA INTERACTIONS ARE SEQUENCE NON-SPECIFIC AND MEDIATED REMARK 400 THROUGH THE DNA PHOSPHATE BACKBONE. THE AUTHORS HAVE MODELED POLYG REMARK 400 FOR ONE STRAND AND POLYC FOR THE OTHER STRAND DUE TO POOR ELECTRON REMARK 400 DENSITY OF BASES. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 128 REMARK 465 GLY A 540 REMARK 465 GLY A 541 REMARK 465 LYS A 542 REMARK 465 ASP A 543 REMARK 465 GLY A 544 REMARK 465 GLU A 545 REMARK 465 LYS A 631 REMARK 465 THR A 632 REMARK 465 LYS A 633 REMARK 465 SER A 634 REMARK 465 THR A 635 REMARK 465 SER A 636 REMARK 465 LEU A 646 REMARK 465 SER A 647 REMARK 465 THR A 648 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 1 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC C 11 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 262 -50.94 -127.25 REMARK 500 ASP A 413 76.99 -67.51 REMARK 500 ILE A 420 -60.25 -94.56 REMARK 500 ASN A 434 31.28 -97.22 REMARK 500 SER A 517 -20.84 -147.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WZR RELATED DB: PDB REMARK 900 APO PROTEIN STRUCTURE. DBREF 4WZW A 129 648 UNP Q15397 K0020_HUMAN 129 648 DBREF 4WZW B 1 14 PDB 4WZW 4WZW 1 14 DBREF 4WZW C 1 16 PDB 4WZW 4WZW 1 16 SEQADV 4WZW SER A 128 UNP Q15397 EXPRESSION TAG SEQADV 4WZW PRO A 289 UNP Q15397 ARG 289 VARIANT SEQRES 1 A 521 SER LYS THR ASN TYR ASP ILE VAL VAL ARG ALA LYS GLN SEQRES 2 A 521 MET TRP GLU ILE LEU ARG ARG LYS ASP CYS ASP LYS GLU SEQRES 3 A 521 LYS ARG VAL LYS LEU MET SER ASP LEU GLN LYS LEU ILE SEQRES 4 A 521 GLN GLY LYS ILE LYS THR ILE ALA PHE ALA HIS ASP SER SEQRES 5 A 521 THR ARG VAL ILE GLN CYS TYR ILE GLN TYR GLY ASN GLU SEQRES 6 A 521 GLU GLN ARG LYS GLN ALA PHE GLU GLU LEU ARG ASP ASP SEQRES 7 A 521 LEU VAL GLU LEU SER LYS ALA LYS TYR SER ARG ASN ILE SEQRES 8 A 521 VAL LYS LYS PHE LEU MET TYR GLY SER LYS PRO GLN ILE SEQRES 9 A 521 ALA GLU ILE ILE ARG SER PHE LYS GLY HIS VAL ARG LYS SEQRES 10 A 521 MET LEU ARG HIS ALA GLU ALA SER ALA ILE VAL GLU TYR SEQRES 11 A 521 ALA TYR ASN ASP LYS ALA ILE LEU GLU GLN ARG ASN MET SEQRES 12 A 521 LEU THR GLU GLU LEU TYR GLY ASN THR PHE GLN LEU TYR SEQRES 13 A 521 LYS SER ALA ASP HIS PRO THR LEU ASP LYS VAL LEU GLU SEQRES 14 A 521 VAL GLN PRO GLU LYS LEU GLU LEU ILE MET ASP GLU MET SEQRES 15 A 521 LYS GLN ILE LEU THR PRO MET ALA GLN LYS GLU ALA VAL SEQRES 16 A 521 ILE LYS HIS SER LEU VAL HIS LYS VAL PHE LEU ASP PHE SEQRES 17 A 521 PHE THR TYR ALA PRO PRO LYS LEU ARG SER GLU MET ILE SEQRES 18 A 521 GLU ALA ILE ARG GLU ALA VAL VAL TYR LEU ALA HIS THR SEQRES 19 A 521 HIS ASP GLY ALA ARG VAL ALA MET HIS CYS LEU TRP HIS SEQRES 20 A 521 GLY THR PRO LYS ASP ARG LYS VAL ILE VAL LYS THR MET SEQRES 21 A 521 LYS THR TYR VAL GLU LYS VAL ALA ASN GLY GLN TYR SER SEQRES 22 A 521 HIS LEU VAL LEU LEU ALA ALA PHE ASP CYS ILE ASP ASP SEQRES 23 A 521 THR LYS LEU VAL LYS GLN ILE ILE ILE SER GLU ILE ILE SEQRES 24 A 521 SER SER LEU PRO SER ILE VAL ASN ASP LYS TYR GLY ARG SEQRES 25 A 521 LYS VAL LEU LEU TYR LEU LEU SER PRO ARG ASP PRO ALA SEQRES 26 A 521 HIS THR VAL ARG GLU ILE ILE GLU VAL LEU GLN LYS GLY SEQRES 27 A 521 ASP GLY ASN ALA HIS SER LYS LYS ASP THR GLU VAL ARG SEQRES 28 A 521 ARG ARG GLU LEU LEU GLU SER ILE SER PRO ALA LEU LEU SEQRES 29 A 521 SER TYR LEU GLN GLU HIS ALA GLN GLU VAL VAL LEU ASP SEQRES 30 A 521 LYS SER ALA CYS VAL LEU VAL SER ASP ILE LEU GLY SER SEQRES 31 A 521 ALA THR GLY ASP VAL GLN PRO THR MET ASN ALA ILE ALA SEQRES 32 A 521 SER LEU ALA ALA THR GLY LEU HIS PRO GLY GLY LYS ASP SEQRES 33 A 521 GLY GLU LEU HIS ILE ALA GLU HIS PRO ALA GLY HIS LEU SEQRES 34 A 521 VAL LEU LYS TRP LEU ILE GLU GLN ASP LYS LYS MET LYS SEQRES 35 A 521 GLU ASN GLY ARG GLU GLY CYS PHE ALA LYS THR LEU VAL SEQRES 36 A 521 GLU HIS VAL GLY MET LYS ASN LEU LYS SER TRP ALA SER SEQRES 37 A 521 VAL ASN ARG GLY ALA ILE ILE LEU SER SER LEU LEU GLN SEQRES 38 A 521 SER CYS ASP LEU GLU VAL ALA ASN LYS VAL LYS ALA ALA SEQRES 39 A 521 LEU LYS SER LEU ILE PRO THR LEU GLU LYS THR LYS SER SEQRES 40 A 521 THR SER LYS GLY ILE GLU ILE LEU LEU GLU LYS LEU SER SEQRES 41 A 521 THR SEQRES 1 B 14 DG DG DG DG DG DG DG DG DG DG DG DG DG SEQRES 2 B 14 DG SEQRES 1 C 16 DC DC DC DC DC DC DC DC DC DC DC DC DC SEQRES 2 C 16 DC DC DC HELIX 1 AA1 THR A 130 ARG A 146 1 17 HELIX 2 AA2 ASP A 151 GLN A 167 1 17 HELIX 3 AA3 LYS A 169 ALA A 176 1 8 HELIX 4 AA4 SER A 179 GLY A 190 1 12 HELIX 5 AA5 ASN A 191 GLU A 201 1 11 HELIX 6 AA6 ASP A 205 ALA A 212 1 8 HELIX 7 AA7 SER A 215 GLY A 226 1 12 HELIX 8 AA8 SER A 227 LYS A 239 1 13 HELIX 9 AA9 HIS A 241 LEU A 246 1 6 HELIX 10 AB1 HIS A 248 LYS A 262 1 15 HELIX 11 AB2 ILE A 264 THR A 272 1 9 HELIX 12 AB3 GLU A 273 LEU A 275 5 3 HELIX 13 AB4 TYR A 276 LYS A 284 1 9 HELIX 14 AB5 THR A 290 GLN A 298 1 9 HELIX 15 AB6 LYS A 301 GLN A 318 1 18 HELIX 16 AB7 VAL A 328 ALA A 339 1 12 HELIX 17 AB8 PRO A 340 ARG A 352 1 13 HELIX 18 AB9 ALA A 354 LEU A 358 5 5 HELIX 19 AC1 THR A 361 HIS A 374 1 14 HELIX 20 AC2 THR A 376 THR A 386 1 11 HELIX 21 AC3 TYR A 390 ASN A 396 1 7 HELIX 22 AC4 SER A 400 ILE A 411 1 12 HELIX 23 AC5 ASP A 413 SER A 428 1 16 HELIX 24 AC6 SER A 428 ASN A 434 1 7 HELIX 25 AC7 TYR A 437 SER A 447 1 11 HELIX 26 AC8 VAL A 455 GLN A 463 1 9 HELIX 27 AC9 LYS A 464 ASP A 466 5 3 HELIX 28 AD1 ASP A 474 HIS A 497 1 24 HELIX 29 AD2 HIS A 497 ASP A 504 1 8 HELIX 30 AD3 SER A 506 CYS A 508 5 3 HELIX 31 AD4 VAL A 509 GLY A 516 1 8 HELIX 32 AD5 VAL A 522 LEU A 532 1 11 HELIX 33 AD6 ALA A 553 GLN A 564 1 12 HELIX 34 AD7 GLN A 564 GLY A 572 1 9 HELIX 35 AD8 CYS A 576 GLY A 586 1 11 HELIX 36 AD9 GLY A 586 TRP A 593 1 8 HELIX 37 AE1 VAL A 596 GLN A 608 1 13 HELIX 38 AE2 ASP A 611 LEU A 622 1 12 HELIX 39 AE3 LYS A 623 LEU A 629 5 7 HELIX 40 AE4 GLY A 638 LYS A 645 1 8 CRYST1 69.122 69.122 273.831 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014467 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003652 0.00000