HEADER TRANSPORT PROTEIN 20-NOV-14 4WZZ TITLE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN TITLE 2 (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTAS (CPHY_0583, TARGET EFI- TITLE 3 511148) WITH BOUND L-RHAMNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SUGAR ABC TRANSPORTER, SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ABC TRANSPORTER SOLUTE BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PHYTOFERMENTANS; SOURCE 3 ORGANISM_TAXID: 357809; SOURCE 4 STRAIN: ATCC 700394 / DSM 18823 / ISDG; SOURCE 5 GENE: CPHY_0583; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ABC TRANSPORTER SOLUTE BINDING PROTEIN, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH,S.R.WASSERMAN, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA,S.CHOWDHURY,J.LAFLEUR,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 3 29-JUL-20 4WZZ 1 COMPND REMARK HETNAM SITE REVDAT 2 15-MAR-17 4WZZ 1 REMARK REVDAT 1 17-DEC-14 4WZZ 0 JRNL AUTH M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH, JRNL AUTH 2 S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA, JRNL AUTH 3 S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL,K.L.WHALEN, JRNL AUTH 4 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING JRNL TITL 2 PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTAS JRNL TITL 3 (CPHY_0583, TARGET EFI-511148) WITH BOUND L-RHAMNOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6695 - 3.9932 1.00 2899 127 0.1489 0.1655 REMARK 3 2 3.9932 - 3.1712 1.00 2730 152 0.1327 0.1746 REMARK 3 3 3.1712 - 2.7708 1.00 2674 159 0.1524 0.1884 REMARK 3 4 2.7708 - 2.5177 1.00 2670 152 0.1496 0.1812 REMARK 3 5 2.5177 - 2.3373 1.00 2653 147 0.1471 0.2030 REMARK 3 6 2.3373 - 2.1996 1.00 2648 145 0.1371 0.1544 REMARK 3 7 2.1996 - 2.0895 1.00 2657 133 0.1367 0.1827 REMARK 3 8 2.0895 - 1.9986 1.00 2634 127 0.1367 0.1665 REMARK 3 9 1.9986 - 1.9216 1.00 2658 132 0.1489 0.1786 REMARK 3 10 1.9216 - 1.8553 1.00 2641 132 0.1506 0.1965 REMARK 3 11 1.8553 - 1.7973 1.00 2627 133 0.1632 0.2108 REMARK 3 12 1.7973 - 1.7460 1.00 2614 156 0.1579 0.2162 REMARK 3 13 1.7460 - 1.7000 1.00 2632 132 0.1608 0.1966 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2446 REMARK 3 ANGLE : 1.225 3333 REMARK 3 CHIRALITY : 0.072 390 REMARK 3 PLANARITY : 0.006 437 REMARK 3 DIHEDRAL : 13.562 872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.5506 34.4682 32.4707 REMARK 3 T TENSOR REMARK 3 T11: 0.2239 T22: 0.1718 REMARK 3 T33: 0.1730 T12: -0.0994 REMARK 3 T13: -0.0339 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 0.9082 L22: 1.3847 REMARK 3 L33: 1.5203 L12: -0.1577 REMARK 3 L13: -0.0184 L23: -0.8048 REMARK 3 S TENSOR REMARK 3 S11: 0.1478 S12: -0.2588 S13: -0.2458 REMARK 3 S21: 0.3202 S22: -0.1220 S23: 0.0603 REMARK 3 S31: -0.0093 S32: -0.1068 S33: -0.0343 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.8628 49.8822 27.3400 REMARK 3 T TENSOR REMARK 3 T11: 0.2087 T22: 0.1370 REMARK 3 T33: 0.1231 T12: -0.0764 REMARK 3 T13: -0.0389 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.0373 L22: 1.0111 REMARK 3 L33: 0.9203 L12: 0.1488 REMARK 3 L13: 0.2748 L23: 0.1650 REMARK 3 S TENSOR REMARK 3 S11: 0.1914 S12: -0.2278 S13: 0.0860 REMARK 3 S21: 0.4206 S22: -0.1969 S23: -0.0341 REMARK 3 S31: -0.1797 S32: -0.0630 S33: 0.0478 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8334 55.9891 13.1853 REMARK 3 T TENSOR REMARK 3 T11: 0.0862 T22: 0.0683 REMARK 3 T33: 0.1079 T12: 0.0227 REMARK 3 T13: -0.0045 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.7081 L22: 1.2417 REMARK 3 L33: 1.7170 L12: 0.1238 REMARK 3 L13: 0.3513 L23: -0.2259 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: 0.0954 S13: 0.1587 REMARK 3 S21: -0.0005 S22: -0.0269 S23: 0.0772 REMARK 3 S31: -0.1872 S32: -0.1382 S33: 0.0268 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.2495 44.3215 12.1466 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.0726 REMARK 3 T33: 0.1110 T12: -0.0047 REMARK 3 T13: -0.0096 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.2024 L22: 1.3087 REMARK 3 L33: 1.4226 L12: 0.2443 REMARK 3 L13: 0.2845 L23: -0.3880 REMARK 3 S TENSOR REMARK 3 S11: 0.0887 S12: 0.0544 S13: -0.0891 REMARK 3 S21: -0.1403 S22: -0.0614 S23: -0.0878 REMARK 3 S31: 0.1425 S32: -0.0469 S33: -0.0212 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.9558 33.7076 37.2115 REMARK 3 T TENSOR REMARK 3 T11: 0.4301 T22: 0.5578 REMARK 3 T33: 0.4577 T12: -0.1820 REMARK 3 T13: -0.3931 T23: 0.2290 REMARK 3 L TENSOR REMARK 3 L11: 0.3816 L22: 0.2869 REMARK 3 L33: 0.1149 L12: -0.2133 REMARK 3 L13: -0.0151 L23: -0.0203 REMARK 3 S TENSOR REMARK 3 S11: 0.1408 S12: -0.0897 S13: -0.2401 REMARK 3 S21: 0.0308 S22: -0.1391 S23: -0.2331 REMARK 3 S31: 0.0745 S32: 0.1743 S33: -0.1315 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.2358 40.0356 22.5242 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.1634 REMARK 3 T33: 0.1380 T12: -0.1048 REMARK 3 T13: -0.1554 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.7869 L22: 1.3090 REMARK 3 L33: 0.7745 L12: 0.5003 REMARK 3 L13: 0.2603 L23: -0.2710 REMARK 3 S TENSOR REMARK 3 S11: 0.2613 S12: -0.1290 S13: -0.2630 REMARK 3 S21: 0.2196 S22: -0.5533 S23: -0.6390 REMARK 3 S31: 0.0805 S32: 0.4385 S33: -0.3120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36564 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 87.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.60 REMARK 200 R MERGE (I) : 0.19600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45540 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (51.24 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM L-RHAMNOSE); RESERVOIR (0.1 M SODIUM HEPES REMARK 280 PH 7.5, 1.4 M SODIUM CITRATE); CRYOPROTECTION (80% RESERVOIR + REMARK 280 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.99100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.81250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.81250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.98650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.81250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.81250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.99550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.81250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.81250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.98650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.81250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.81250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.99550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.99100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 549 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 GLY A 10 REMARK 465 THR A 11 REMARK 465 GLU A 12 REMARK 465 ASN A 13 REMARK 465 LEU A 14 REMARK 465 TYR A 15 REMARK 465 PHE A 16 REMARK 465 GLN A 17 REMARK 465 SER A 18 REMARK 465 MSE A 19 REMARK 465 GLY A 20 REMARK 465 CYS A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 LYS A 24 REMARK 465 THR A 25 REMARK 465 ASP A 26 REMARK 465 ASN A 27 REMARK 465 THR A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 ASN A 31 REMARK 465 LYS A 32 REMARK 465 ALA A 33 REMARK 465 LYS A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 THR A 37 REMARK 465 THR A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 THR A 41 REMARK 465 THR A 42 REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 ASP A 45 REMARK 465 GLY A 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 82 O HOH A 503 1.59 REMARK 500 O HOH A 512 O HOH A 605 2.18 REMARK 500 O HOH A 752 O HOH A 768 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 521 O HOH A 521 8665 1.87 REMARK 500 O HOH A 547 O HOH A 574 3644 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 139 -55.18 72.76 REMARK 500 ALA A 182 -130.12 -97.02 REMARK 500 ASP A 281 66.44 -105.52 REMARK 500 LEU A 292 -138.74 -158.92 REMARK 500 ASP A 319 -2.81 79.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511148 RELATED DB: TARGETTRACK DBREF 4WZZ A 20 367 UNP A9KIX1 A9KIX1_CLOPH 20 367 SEQADV 4WZZ MSE A -3 UNP A9KIX1 INITIATING METHIONINE SEQADV 4WZZ HIS A -2 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ HIS A -1 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ HIS A 0 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ HIS A 1 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ HIS A 2 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ HIS A 3 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ SER A 4 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ SER A 5 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ GLY A 6 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ VAL A 7 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ ASP A 8 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ LEU A 9 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ GLY A 10 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ THR A 11 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ GLU A 12 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ ASN A 13 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ LEU A 14 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ TYR A 15 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ PHE A 16 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ GLN A 17 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ SER A 18 UNP A9KIX1 EXPRESSION TAG SEQADV 4WZZ MSE A 19 UNP A9KIX1 EXPRESSION TAG SEQRES 1 A 371 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 371 GLY THR GLU ASN LEU TYR PHE GLN SER MSE GLY CYS SER SEQRES 3 A 371 SER LYS THR ASP ASN THR SER SER ASN LYS ALA LYS THR SEQRES 4 A 371 PRO THR THR ALA ALA THR THR GLY GLY ASP GLY TYR ALA SEQRES 5 A 371 THR THR ALA THR TYR ALA ILE ILE VAL LYS SER ALA GLY SEQRES 6 A 371 ASN PRO TYR ASN GLN LYS GLU SER GLU GLY TYR LYS GLN SEQRES 7 A 371 VAL ILE GLU ALA ASN GLY GLY LYS CYS VAL ILE GLN GLU SEQRES 8 A 371 PRO LYS SER ALA THR ALA GLU ASP GLN ILE THR CYS ILE SEQRES 9 A 371 ASN ASN ALA ILE SER GLN GLY VAL ASP CYS ILE ALA ILE SEQRES 10 A 371 ALA ALA ASN ASP THR ASP ALA LEU GLU PRO ALA LEU THR SEQRES 11 A 371 GLU ALA LYS ASN GLN GLY ILE HIS VAL LEU SER LEU ASP SEQRES 12 A 371 SER ALA THR ASN ALA ASN SER ARG LYS VAL PHE VAL ASN SEQRES 13 A 371 GLN ALA GLY THR THR GLN ILE ALA GLN ALA LEU MSE ASP SEQRES 14 A 371 ALA ILE LEU ASP ILE SER GLY GLY SER GLY ASP TRP ALA SEQRES 15 A 371 VAL LEU SER ALA ALA SER THR ALA THR ASN GLN ASN ALA SEQRES 16 A 371 TRP ILE ASP GLY MSE LYS THR VAL MSE GLN ASP SER LYS SEQRES 17 A 371 TYR SER LYS LEU ASN LEU ILE GLY VAL TYR TYR GLY ASP SEQRES 18 A 371 ASP GLU TYR GLN ALA SER CYS ASP GLN THR GLU ALA ILE SEQRES 19 A 371 LEU ALA ALA ASP PRO ASN ILE LYS VAL ILE CYS ALA PRO SEQRES 20 A 371 THR THR VAL GLY ILE MSE ALA ALA ALA LYS VAL LEU GLN SEQRES 21 A 371 ASP LYS GLY LEU SER GLY LYS VAL LYS LEU THR GLY LEU SEQRES 22 A 371 GLY LEU PRO SER GLU MSE ALA ASP TYR ILE GLY ASP ASP SEQRES 23 A 371 ASP GLN HIS SER CYS PRO TYR MSE PHE LEU TRP ASN PRO SEQRES 24 A 371 ILE GLN LEU GLY ASN LEU ALA ALA TYR ALA SER ILE SER SEQRES 25 A 371 LEU VAL ASN GLY THR ILE THR GLY ALA ALA ASP GLN SER SEQRES 26 A 371 PHE THR VAL PRO ASP LYS THR LEU GLY ASP ASN GLY SER SEQRES 27 A 371 TYR LYS ILE THR ALA ALA ALA ASP GLY GLY THR GLU ILE SEQRES 28 A 371 ILE LEU GLY ALA PRO PHE LYS PHE GLU PRO SER ASN ILE SEQRES 29 A 371 ALA GLU TRP ALA LYS VAL TYR MODRES 4WZZ MSE A 164 MET MODIFIED RESIDUE MODRES 4WZZ MSE A 196 MET MODIFIED RESIDUE MODRES 4WZZ MSE A 200 MET MODIFIED RESIDUE MODRES 4WZZ MSE A 249 MET MODIFIED RESIDUE MODRES 4WZZ MSE A 275 MET MODIFIED RESIDUE MODRES 4WZZ MSE A 290 MET MODIFIED RESIDUE HET MSE A 164 17 HET MSE A 196 17 HET MSE A 200 17 HET MSE A 249 34 HET MSE A 275 17 HET MSE A 290 17 HET RAM A 401 23 HET EDO A 402 10 HET EDO A 403 10 HETNAM MSE SELENOMETHIONINE HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 RAM C6 H12 O5 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *305(H2 O) HELIX 1 AA1 ASN A 62 ASN A 79 1 18 HELIX 2 AA2 THR A 92 GLY A 107 1 16 HELIX 3 AA3 LEU A 121 GLN A 131 1 11 HELIX 4 AA4 ASN A 143 ARG A 147 5 5 HELIX 5 AA5 GLY A 155 SER A 171 1 17 HELIX 6 AA6 ALA A 186 MSE A 200 1 15 HELIX 7 AA7 GLN A 201 SER A 206 5 6 HELIX 8 AA8 GLU A 219 ASP A 234 1 16 HELIX 9 AA9 THR A 244 LYS A 258 1 15 HELIX 10 AB1 LEU A 271 ALA A 276 1 6 HELIX 11 AB2 ASP A 277 ILE A 279 5 3 HELIX 12 AB3 ASN A 294 ASN A 311 1 18 HELIX 13 AB4 ASN A 359 LYS A 365 1 7 SHEET 1 AA1 7 LYS A 82 GLN A 86 0 SHEET 2 AA1 7 THR A 52 ILE A 56 1 N TYR A 53 O LYS A 82 SHEET 3 AA1 7 CYS A 110 ILE A 113 1 O ALA A 112 N ALA A 54 SHEET 4 AA1 7 HIS A 134 LEU A 138 1 O LEU A 136 N ILE A 111 SHEET 5 AA1 7 PHE A 150 ASN A 152 1 O VAL A 151 N SER A 137 SHEET 6 AA1 7 THR A 345 ILE A 348 1 O ILE A 347 N ASN A 152 SHEET 7 AA1 7 THR A 338 ALA A 339 -1 N THR A 338 O GLU A 346 SHEET 1 AA2 4 LEU A 208 TYR A 215 0 SHEET 2 AA2 4 GLY A 175 SER A 181 1 N SER A 181 O TYR A 214 SHEET 3 AA2 4 VAL A 239 ALA A 242 1 O CYS A 241 N ALA A 178 SHEET 4 AA2 4 LYS A 265 GLY A 268 1 O THR A 267 N ALA A 242 SHEET 1 AA3 2 MSE A 290 LEU A 292 0 SHEET 2 AA3 2 PHE A 353 PHE A 355 -1 O PHE A 355 N MSE A 290 SHEET 1 AA4 2 SER A 321 THR A 323 0 SHEET 2 AA4 2 SER A 334 LYS A 336 -1 O TYR A 335 N PHE A 322 LINK C LEU A 163 N MSE A 164 1555 1555 1.33 LINK C MSE A 164 N ASP A 165 1555 1555 1.33 LINK C GLY A 195 N MSE A 196 1555 1555 1.33 LINK C MSE A 196 N LYS A 197 1555 1555 1.32 LINK C VAL A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N GLN A 201 1555 1555 1.34 LINK C ILE A 248 N AMSE A 249 1555 1555 1.33 LINK C ILE A 248 N BMSE A 249 1555 1555 1.32 LINK C AMSE A 249 N ALA A 250 1555 1555 1.33 LINK C BMSE A 249 N ALA A 250 1555 1555 1.33 LINK C GLU A 274 N MSE A 275 1555 1555 1.33 LINK C MSE A 275 N ALA A 276 1555 1555 1.33 LINK C TYR A 289 N MSE A 290 1555 1555 1.33 LINK C MSE A 290 N PHE A 291 1555 1555 1.33 CRYST1 87.625 87.625 83.982 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011907 0.00000