HEADER TRANSCRIPTION 24-NOV-14 4X1E TITLE CRYSTAL STRUCTURE OF UNLIGANDED E. COLI TRANSCRIPTIONAL REGULATOR TITLE 2 RUTR, W167A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RUT OPERON REPRESSOR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O6:H1; SOURCE 3 ORGANISM_TAXID: 199310; SOURCE 4 STRAIN: CFT073 / ATCC 700928 / UPEC; SOURCE 5 GENE: RUTR, C1150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS TRANSCRIPTIONAL REGULATOR, TETR FAMILY MEMBER, ARGININE AND KEYWDS 2 PYRIMIDINE BIOSYNTHESIS, DNA BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.NGUYEN LE MINH,S.DE CIMA,I.BERVOETS,D.MAES,V.RUBIO,D.CHARLIER REVDAT 3 10-JAN-24 4X1E 1 REMARK REVDAT 2 04-MAR-15 4X1E 1 JRNL REVDAT 1 21-JAN-15 4X1E 0 JRNL AUTH P.NGUYEN LE MINH,S.DE CIMA,I.BERVOETS,D.MAES,V.RUBIO, JRNL AUTH 2 D.CHARLIER JRNL TITL LIGAND BINDING SPECIFICITY OF RUTR, A MEMBER OF THE TETR JRNL TITL 2 FAMILY OF TRANSCRIPTION REGULATORS IN ESCHERICHIA COLI. JRNL REF FEBS OPEN BIO V. 5 76 2015 JRNL REFN ESSN 2211-5463 JRNL PMID 25685666 JRNL DOI 10.1016/J.FOB.2015.01.002 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 16147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 865 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.465 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.792 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3160 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3132 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4283 ; 1.312 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7192 ; 1.030 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 4.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;32.568 ;23.676 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;15.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3526 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 711 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1567 ; 1.791 ; 1.350 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1566 ; 1.788 ; 1.347 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1957 ; 2.772 ; 2.015 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 21 211 B 21 211 11039 0.140 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3550 27.4170 -20.4720 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.0615 REMARK 3 T33: 0.5723 T12: 0.0163 REMARK 3 T13: 0.0031 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 8.7262 L22: 4.9963 REMARK 3 L33: 6.0805 L12: 0.3816 REMARK 3 L13: -2.6945 L23: 0.9713 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: 0.4659 S13: 0.7800 REMARK 3 S21: -0.0364 S22: -0.0310 S23: 0.3056 REMARK 3 S31: -0.2987 S32: -0.5711 S33: -0.0838 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9210 3.1580 -5.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.0779 T22: 0.2326 REMARK 3 T33: 0.6615 T12: -0.0272 REMARK 3 T13: -0.0182 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 4.4513 L22: 10.7529 REMARK 3 L33: 7.5707 L12: 3.6798 REMARK 3 L13: -3.3579 L23: -6.0737 REMARK 3 S TENSOR REMARK 3 S11: 0.2315 S12: -0.5149 S13: -0.1860 REMARK 3 S21: -0.2463 S22: -0.1928 S23: -0.6145 REMARK 3 S31: 0.0303 S32: 0.5708 S33: -0.0387 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1020 13.7630 -16.0400 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.2586 REMARK 3 T33: 0.6848 T12: -0.0572 REMARK 3 T13: 0.0267 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 3.2645 L22: 4.4878 REMARK 3 L33: 12.6427 L12: 1.9485 REMARK 3 L13: 0.9755 L23: 0.4778 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.4335 S13: 0.1516 REMARK 3 S21: -0.4470 S22: 0.2215 S23: -0.1308 REMARK 3 S31: -0.5547 S32: 0.8974 S33: -0.2181 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1770 -6.7080 -11.4950 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.0500 REMARK 3 T33: 0.6253 T12: 0.0472 REMARK 3 T13: -0.0597 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 9.4856 L22: 8.3844 REMARK 3 L33: 10.4922 L12: 2.8235 REMARK 3 L13: -4.0531 L23: -4.6069 REMARK 3 S TENSOR REMARK 3 S11: -0.0901 S12: 0.0195 S13: -0.3823 REMARK 3 S21: -0.3591 S22: -0.1923 S23: -0.6030 REMARK 3 S31: 0.2490 S32: 0.5404 S33: 0.2824 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6710 9.1390 -3.0720 REMARK 3 T TENSOR REMARK 3 T11: 0.0150 T22: 0.1300 REMARK 3 T33: 0.6090 T12: 0.0002 REMARK 3 T13: -0.0089 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 2.4210 L22: 5.6180 REMARK 3 L33: 3.8006 L12: -0.4768 REMARK 3 L13: -0.1918 L23: 0.4097 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: -0.3483 S13: 0.1082 REMARK 3 S21: 0.1697 S22: 0.0617 S23: 0.0361 REMARK 3 S31: -0.1517 S32: -0.1491 S33: -0.0287 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 43 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3830 18.9300 -35.9720 REMARK 3 T TENSOR REMARK 3 T11: 1.9743 T22: 0.7379 REMARK 3 T33: 1.3462 T12: 0.9854 REMARK 3 T13: 0.8315 T23: 0.5379 REMARK 3 L TENSOR REMARK 3 L11: 20.7172 L22: 32.6416 REMARK 3 L33: 39.7550 L12: -3.0486 REMARK 3 L13: 21.3736 L23: -26.2769 REMARK 3 S TENSOR REMARK 3 S11: 1.8791 S12: 1.7377 S13: 1.2477 REMARK 3 S21: -6.4602 S22: -4.0339 S23: -2.7075 REMARK 3 S31: 6.3781 S32: 4.2655 S33: 2.1548 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 56 REMARK 3 ORIGIN FOR THE GROUP (A): -29.3840 23.0290 -43.2230 REMARK 3 T TENSOR REMARK 3 T11: 2.8623 T22: 1.4512 REMARK 3 T33: 1.2847 T12: 0.7756 REMARK 3 T13: -0.0682 T23: 0.4629 REMARK 3 L TENSOR REMARK 3 L11: 3.2569 L22: 1.2840 REMARK 3 L33: 10.3262 L12: 0.7802 REMARK 3 L13: -5.6455 L23: -2.1109 REMARK 3 S TENSOR REMARK 3 S11: -0.7187 S12: 0.5417 S13: -0.3504 REMARK 3 S21: -0.6923 S22: 0.8608 S23: 0.8916 REMARK 3 S31: 1.4977 S32: -1.4467 S33: -0.1420 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): -29.0620 20.3770 -27.9470 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.2941 REMARK 3 T33: 0.6653 T12: 0.2528 REMARK 3 T13: 0.0515 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.6189 L22: 37.3770 REMARK 3 L33: 24.1727 L12: 1.5662 REMARK 3 L13: 1.2718 L23: -15.5969 REMARK 3 S TENSOR REMARK 3 S11: 0.4727 S12: 0.5493 S13: 0.0819 REMARK 3 S21: -0.2022 S22: -0.4022 S23: -0.7751 REMARK 3 S31: -0.4969 S32: -0.1689 S33: -0.0705 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2300 1.5420 -9.7160 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.2590 REMARK 3 T33: 0.9132 T12: 0.0139 REMARK 3 T13: -0.0957 T23: 0.0988 REMARK 3 L TENSOR REMARK 3 L11: 3.9650 L22: 5.4584 REMARK 3 L33: 15.6444 L12: 1.4844 REMARK 3 L13: -6.7005 L23: -4.2468 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.1230 S13: 0.2233 REMARK 3 S21: -0.0655 S22: -0.0533 S23: 0.5226 REMARK 3 S31: -0.4077 S32: -0.7640 S33: 0.0766 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 97 B 211 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9850 5.1070 -13.7280 REMARK 3 T TENSOR REMARK 3 T11: 0.0452 T22: 0.0447 REMARK 3 T33: 0.6443 T12: -0.0010 REMARK 3 T13: -0.0788 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.1761 L22: 3.6126 REMARK 3 L33: 2.3166 L12: -0.6044 REMARK 3 L13: 0.1683 L23: -0.6668 REMARK 3 S TENSOR REMARK 3 S11: 0.1376 S12: -0.1009 S13: -0.0987 REMARK 3 S21: -0.2956 S22: -0.1027 S23: 0.2681 REMARK 3 S31: -0.0933 S32: -0.0165 S33: -0.0349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4X1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000203939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.0.9 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17045 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 66.893 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : 0.33200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 3LOC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % (W/V) METHANOL, 10 MM CACL2 AND REMARK 280 0.1 M TRIS-HCL PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.21000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.85500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.85500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.21000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 GLY A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 LEU A 213 REMARK 465 GLY A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLN B 3 REMARK 465 GLY B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 6 REMARK 465 LYS B 7 REMARK 465 THR B 8 REMARK 465 THR B 9 REMARK 465 GLY B 10 REMARK 465 LYS B 11 REMARK 465 ARG B 12 REMARK 465 SER B 13 REMARK 465 ARG B 14 REMARK 465 ALA B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 LYS B 19 REMARK 465 LYS B 20 REMARK 465 LEU B 213 REMARK 465 GLY B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 121 16.87 -140.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JYK RELATED DB: PDB REMARK 900 4JYK CONTAINS THE SAME PROTEIN (WILD TYPE) COMPLEXED WITH URACIL REMARK 900 RELATED ID: 3LOC RELATED DB: PDB REMARK 900 3LOC CONTAINS THE SAME PROTEIN (WILD TYPE) COMPLEXED WITH URACIL DBREF 4X1E A 1 212 UNP P0ACU3 RUTR_ECOL6 1 212 DBREF 4X1E B 1 212 UNP P0ACU3 RUTR_ECOL6 1 212 SEQADV 4X1E ALA A 167 UNP P0ACU3 TRP 167 ENGINEERED MUTATION SEQADV 4X1E LEU A 213 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E GLY A 214 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS A 215 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS A 216 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS A 217 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS A 218 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS A 219 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS A 220 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E ALA B 167 UNP P0ACU3 TRP 167 ENGINEERED MUTATION SEQADV 4X1E LEU B 213 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E GLY B 214 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS B 215 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS B 216 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS B 217 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS B 218 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS B 219 UNP P0ACU3 EXPRESSION TAG SEQADV 4X1E HIS B 220 UNP P0ACU3 EXPRESSION TAG SEQRES 1 A 220 MET THR GLN GLY ALA VAL LYS THR THR GLY LYS ARG SER SEQRES 2 A 220 ARG ALA VAL SER ALA LYS LYS LYS ALA ILE LEU SER ALA SEQRES 3 A 220 ALA LEU ASP THR PHE SER GLN PHE GLY PHE HIS GLY THR SEQRES 4 A 220 ARG LEU GLU GLN ILE ALA GLU LEU ALA GLY VAL SER LYS SEQRES 5 A 220 THR ASN LEU LEU TYR TYR PHE PRO SER LYS GLU ALA LEU SEQRES 6 A 220 TYR ILE ALA VAL LEU ARG GLN ILE LEU ASP ILE TRP LEU SEQRES 7 A 220 ALA PRO LEU LYS ALA PHE ARG GLU ASP PHE ALA PRO LEU SEQRES 8 A 220 ALA ALA ILE LYS GLU TYR ILE ARG LEU LYS LEU GLU VAL SEQRES 9 A 220 SER ARG ASP TYR PRO GLN ALA SER ARG LEU PHE CYS MET SEQRES 10 A 220 GLU MET LEU ALA GLY ALA PRO LEU LEU MET ASP GLU LEU SEQRES 11 A 220 THR GLY ASP LEU LYS ALA LEU ILE ASP GLU LYS SER ALA SEQRES 12 A 220 LEU ILE ALA GLY TRP VAL LYS SER GLY LYS LEU ALA PRO SEQRES 13 A 220 ILE ASP PRO GLN HIS LEU ILE PHE MET ILE ALA ALA SER SEQRES 14 A 220 THR GLN HIS TYR ALA ASP PHE ALA PRO GLN VAL GLU ALA SEQRES 15 A 220 VAL THR GLY ALA THR LEU ARG ASP GLU VAL PHE PHE ASN SEQRES 16 A 220 GLN THR VAL GLU ASN VAL GLN ARG ILE ILE ILE GLU GLY SEQRES 17 A 220 ILE ARG PRO ARG LEU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 220 MET THR GLN GLY ALA VAL LYS THR THR GLY LYS ARG SER SEQRES 2 B 220 ARG ALA VAL SER ALA LYS LYS LYS ALA ILE LEU SER ALA SEQRES 3 B 220 ALA LEU ASP THR PHE SER GLN PHE GLY PHE HIS GLY THR SEQRES 4 B 220 ARG LEU GLU GLN ILE ALA GLU LEU ALA GLY VAL SER LYS SEQRES 5 B 220 THR ASN LEU LEU TYR TYR PHE PRO SER LYS GLU ALA LEU SEQRES 6 B 220 TYR ILE ALA VAL LEU ARG GLN ILE LEU ASP ILE TRP LEU SEQRES 7 B 220 ALA PRO LEU LYS ALA PHE ARG GLU ASP PHE ALA PRO LEU SEQRES 8 B 220 ALA ALA ILE LYS GLU TYR ILE ARG LEU LYS LEU GLU VAL SEQRES 9 B 220 SER ARG ASP TYR PRO GLN ALA SER ARG LEU PHE CYS MET SEQRES 10 B 220 GLU MET LEU ALA GLY ALA PRO LEU LEU MET ASP GLU LEU SEQRES 11 B 220 THR GLY ASP LEU LYS ALA LEU ILE ASP GLU LYS SER ALA SEQRES 12 B 220 LEU ILE ALA GLY TRP VAL LYS SER GLY LYS LEU ALA PRO SEQRES 13 B 220 ILE ASP PRO GLN HIS LEU ILE PHE MET ILE ALA ALA SER SEQRES 14 B 220 THR GLN HIS TYR ALA ASP PHE ALA PRO GLN VAL GLU ALA SEQRES 15 B 220 VAL THR GLY ALA THR LEU ARG ASP GLU VAL PHE PHE ASN SEQRES 16 B 220 GLN THR VAL GLU ASN VAL GLN ARG ILE ILE ILE GLU GLY SEQRES 17 B 220 ILE ARG PRO ARG LEU GLY HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *91(H2 O) HELIX 1 AA1 ARG A 14 THR A 39 1 26 HELIX 2 AA2 ARG A 40 GLY A 49 1 10 HELIX 3 AA3 SER A 51 PHE A 59 1 9 HELIX 4 AA4 SER A 61 ALA A 79 1 19 HELIX 5 AA5 PRO A 80 PHE A 84 5 5 HELIX 6 AA6 ALA A 89 TYR A 108 1 20 HELIX 7 AA7 TYR A 108 ALA A 121 1 14 HELIX 8 AA8 LEU A 126 GLY A 132 1 7 HELIX 9 AA9 GLY A 132 SER A 151 1 20 HELIX 10 AB1 ASP A 158 PHE A 176 1 19 HELIX 11 AB2 PHE A 176 GLY A 185 1 10 HELIX 12 AB3 ASP A 190 GLY A 208 1 19 HELIX 13 AB4 ALA B 22 THR B 39 1 18 HELIX 14 AB5 ARG B 40 GLY B 49 1 10 HELIX 15 AB6 SER B 51 PHE B 59 1 9 HELIX 16 AB7 SER B 61 ALA B 79 1 19 HELIX 17 AB8 PRO B 80 PHE B 84 5 5 HELIX 18 AB9 ALA B 89 TYR B 108 1 20 HELIX 19 AC1 TYR B 108 GLY B 122 1 15 HELIX 20 AC2 ALA B 123 SER B 151 1 29 HELIX 21 AC3 ASP B 158 PHE B 176 1 19 HELIX 22 AC4 PHE B 176 GLY B 185 1 10 HELIX 23 AC5 ASP B 190 GLY B 208 1 19 CRYST1 48.420 91.770 97.710 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020653 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010234 0.00000