HEADER VIRAL PROTEIN 25-NOV-14 4X1X TITLE CRYSTAL STRUCTURE OF RHDVB P DOMAIN IN COMPLEX WITH LEWIS Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 236-569; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RABBIT HEMORRHAGIC DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: RHDV; SOURCE 4 ORGANISM_TAXID: 11976; SOURCE 5 GENE: VP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MAJOR CAPSID PROTEIN, CAPSID SPIKE, PROTRUDING DOMAIN, HBGA BINDING, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.M.LEUTHOLD,G.S.HANSMAN REVDAT 4 10-JAN-24 4X1X 1 HETSYN REVDAT 3 29-JUL-20 4X1X 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 04-FEB-15 4X1X 1 JRNL REVDAT 1 14-JAN-15 4X1X 0 JRNL AUTH M.M.LEUTHOLD,K.P.DALTON,G.S.HANSMAN JRNL TITL STRUCTURAL ANALYSIS OF A RABBIT HEMORRHAGIC DISEASE VIRUS JRNL TITL 2 BINDING TO HISTO-BLOOD GROUP ANTIGENS. JRNL REF J.VIROL. V. 89 2378 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25505081 JRNL DOI 10.1128/JVI.02832-14 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 140439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 7012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2427 - 4.9698 0.92 4405 230 0.1409 0.1571 REMARK 3 2 4.9698 - 3.9453 0.93 4445 233 0.1223 0.1552 REMARK 3 3 3.9453 - 3.4467 0.90 4281 228 0.1436 0.1581 REMARK 3 4 3.4467 - 3.1317 0.93 4427 230 0.1454 0.1828 REMARK 3 5 3.1317 - 2.9072 0.94 4476 233 0.1420 0.1833 REMARK 3 6 2.9072 - 2.7358 0.95 4534 235 0.1443 0.1762 REMARK 3 7 2.7358 - 2.5988 0.95 4484 243 0.1440 0.1584 REMARK 3 8 2.5988 - 2.4857 0.89 4304 228 0.1430 0.1702 REMARK 3 9 2.4857 - 2.3900 0.93 4405 226 0.1426 0.1743 REMARK 3 10 2.3900 - 2.3075 0.94 4526 243 0.1383 0.1739 REMARK 3 11 2.3075 - 2.2354 0.95 4489 235 0.1377 0.1590 REMARK 3 12 2.2354 - 2.1715 0.95 4575 247 0.1403 0.1647 REMARK 3 13 2.1715 - 2.1143 0.95 4520 238 0.1526 0.1973 REMARK 3 14 2.1143 - 2.0627 0.95 4496 237 0.1556 0.1966 REMARK 3 15 2.0627 - 2.0159 0.95 4554 241 0.1580 0.1922 REMARK 3 16 2.0159 - 1.9730 0.89 4262 226 0.1637 0.1958 REMARK 3 17 1.9730 - 1.9335 0.93 4452 233 0.1539 0.1748 REMARK 3 18 1.9335 - 1.8970 0.93 4401 231 0.1584 0.1641 REMARK 3 19 1.8970 - 1.8631 0.94 4493 235 0.1686 0.2059 REMARK 3 20 1.8631 - 1.8315 0.95 4549 231 0.1741 0.2121 REMARK 3 21 1.8315 - 1.8020 0.95 4476 236 0.1847 0.2205 REMARK 3 22 1.8020 - 1.7743 0.95 4520 237 0.1906 0.2522 REMARK 3 23 1.7743 - 1.7482 0.94 4438 238 0.2041 0.2285 REMARK 3 24 1.7482 - 1.7235 0.95 4613 240 0.1990 0.2285 REMARK 3 25 1.7235 - 1.7003 0.95 4474 235 0.2082 0.2213 REMARK 3 26 1.7003 - 1.6782 0.92 4414 231 0.2229 0.2565 REMARK 3 27 1.6782 - 1.6572 0.89 4157 224 0.2344 0.2829 REMARK 3 28 1.6572 - 1.6372 0.92 4389 232 0.2402 0.2782 REMARK 3 29 1.6372 - 1.6182 0.93 4446 235 0.2428 0.3154 REMARK 3 30 1.6182 - 1.6000 0.93 4422 221 0.2447 0.2961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5060 REMARK 3 ANGLE : 1.081 6954 REMARK 3 CHIRALITY : 0.042 788 REMARK 3 PLANARITY : 0.005 919 REMARK 3 DIHEDRAL : 10.920 1750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4833 27.1939 -33.1228 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.0934 REMARK 3 T33: 0.1100 T12: 0.0081 REMARK 3 T13: 0.0003 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.2623 L22: 5.8276 REMARK 3 L33: 5.0611 L12: -1.6137 REMARK 3 L13: -0.3246 L23: 4.4594 REMARK 3 S TENSOR REMARK 3 S11: -0.1192 S12: -0.0750 S13: -0.0360 REMARK 3 S21: 0.4284 S22: 0.1439 S23: -0.0357 REMARK 3 S31: 0.1889 S32: -0.0502 S33: -0.0336 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.0261 18.1286 -38.5683 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.1200 REMARK 3 T33: 0.1689 T12: 0.0035 REMARK 3 T13: -0.0104 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.0619 L22: 2.1741 REMARK 3 L33: 0.4728 L12: -0.2027 REMARK 3 L13: -0.2266 L23: 0.5220 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: 0.0453 S13: -0.1575 REMARK 3 S21: -0.0158 S22: 0.0602 S23: 0.3981 REMARK 3 S31: 0.0612 S32: -0.1034 S33: -0.0095 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0463 -0.8195 -47.4016 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.0932 REMARK 3 T33: 0.2179 T12: -0.0122 REMARK 3 T13: -0.0409 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 4.2600 L22: 1.8987 REMARK 3 L33: 3.9975 L12: -1.4108 REMARK 3 L13: -3.1233 L23: 1.5288 REMARK 3 S TENSOR REMARK 3 S11: -0.1583 S12: -0.0531 S13: -0.2657 REMARK 3 S21: 0.0244 S22: -0.0398 S23: 0.3720 REMARK 3 S31: 0.2260 S32: -0.0686 S33: 0.2146 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4542 11.8916 -53.8896 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.1582 REMARK 3 T33: 0.1782 T12: 0.0306 REMARK 3 T13: -0.0517 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 2.5412 L22: 5.4550 REMARK 3 L33: 2.9519 L12: 1.4817 REMARK 3 L13: 1.3833 L23: -1.6511 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: 0.4152 S13: -0.3356 REMARK 3 S21: -0.4648 S22: -0.0148 S23: -0.0661 REMARK 3 S31: 0.1580 S32: 0.2740 S33: -0.0504 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1474 5.2088 -49.8187 REMARK 3 T TENSOR REMARK 3 T11: 0.1071 T22: 0.1005 REMARK 3 T33: 0.1449 T12: -0.0159 REMARK 3 T13: -0.0311 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.7067 L22: 0.9521 REMARK 3 L33: 0.6025 L12: -0.5999 REMARK 3 L13: 0.0434 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.0265 S13: -0.1372 REMARK 3 S21: -0.1265 S22: -0.0547 S23: 0.2517 REMARK 3 S31: 0.0873 S32: -0.1112 S33: 0.0055 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 437 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.8295 23.9952 -46.8212 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.1005 REMARK 3 T33: 0.1619 T12: 0.0093 REMARK 3 T13: -0.0406 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.8727 L22: 1.0068 REMARK 3 L33: 1.0069 L12: -0.3057 REMARK 3 L13: -0.5409 L23: 0.2745 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: 0.0436 S13: -0.0212 REMARK 3 S21: -0.1484 S22: -0.0630 S23: 0.2331 REMARK 3 S31: -0.0981 S32: -0.1117 S33: 0.0166 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 477 THROUGH 510 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2954 25.4130 -35.5580 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.1227 REMARK 3 T33: 0.2094 T12: 0.0088 REMARK 3 T13: 0.0033 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.9146 L22: 1.1716 REMARK 3 L33: 1.3261 L12: -1.0590 REMARK 3 L13: -0.0099 L23: 0.4344 REMARK 3 S TENSOR REMARK 3 S11: 0.0986 S12: -0.1231 S13: 0.1145 REMARK 3 S21: 0.0660 S22: 0.1102 S23: 0.3282 REMARK 3 S31: -0.1870 S32: -0.3136 S33: -0.1716 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 511 THROUGH 569 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.8712 37.6912 -36.4818 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1107 REMARK 3 T33: 0.1811 T12: 0.0313 REMARK 3 T13: 0.0023 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.5205 L22: 1.7002 REMARK 3 L33: 2.6288 L12: -0.2974 REMARK 3 L13: 1.0215 L23: 0.6710 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.0147 S13: 0.1091 REMARK 3 S21: -0.0379 S22: 0.0261 S23: 0.2914 REMARK 3 S31: -0.2697 S32: -0.0790 S33: -0.0236 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 236 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3418 18.8495 -22.5556 REMARK 3 T TENSOR REMARK 3 T11: 0.0883 T22: 0.0794 REMARK 3 T33: 0.0808 T12: 0.0041 REMARK 3 T13: 0.0040 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.5767 L22: 0.5862 REMARK 3 L33: 2.0578 L12: 0.1276 REMARK 3 L13: -0.8049 L23: -0.1336 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.0435 S13: 0.0209 REMARK 3 S21: 0.0577 S22: -0.0158 S23: 0.0236 REMARK 3 S31: -0.0761 S32: -0.1216 S33: 0.0255 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 298 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8370 6.8453 -49.7145 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.1249 REMARK 3 T33: 0.0685 T12: 0.0080 REMARK 3 T13: 0.0344 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 4.9208 L22: 3.2066 REMARK 3 L33: 5.6184 L12: 0.1322 REMARK 3 L13: -0.0150 L23: 1.7548 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.1597 S13: 0.0278 REMARK 3 S21: -0.3921 S22: 0.0444 S23: -0.2313 REMARK 3 S31: 0.0704 S32: 0.1476 S33: 0.0085 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 315 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3556 10.6203 -38.7043 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.1012 REMARK 3 T33: 0.1069 T12: 0.0016 REMARK 3 T13: 0.0157 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.4341 L22: 0.7392 REMARK 3 L33: 1.3513 L12: 0.0240 REMARK 3 L13: -0.1892 L23: 0.0150 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0340 S13: 0.0157 REMARK 3 S21: -0.0138 S22: 0.0133 S23: -0.0273 REMARK 3 S31: 0.0084 S32: 0.0492 S33: -0.0135 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 437 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4059 8.9965 -20.8882 REMARK 3 T TENSOR REMARK 3 T11: 0.1042 T22: 0.0836 REMARK 3 T33: 0.0908 T12: 0.0031 REMARK 3 T13: 0.0254 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.8607 L22: 1.3375 REMARK 3 L33: 3.4961 L12: -0.0520 REMARK 3 L13: 0.5997 L23: 1.9501 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.1145 S13: -0.0288 REMARK 3 S21: 0.1391 S22: -0.0464 S23: 0.0604 REMARK 3 S31: 0.2337 S32: -0.0947 S33: 0.0700 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 477 THROUGH 551 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8403 15.8044 -13.5147 REMARK 3 T TENSOR REMARK 3 T11: 0.1079 T22: 0.1053 REMARK 3 T33: 0.0968 T12: -0.0137 REMARK 3 T13: 0.0177 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.0308 L22: 0.6264 REMARK 3 L33: 1.5207 L12: -0.4066 REMARK 3 L13: -0.4402 L23: 0.2289 REMARK 3 S TENSOR REMARK 3 S11: -0.1131 S12: -0.0585 S13: -0.1175 REMARK 3 S21: 0.0607 S22: -0.0199 S23: 0.1029 REMARK 3 S31: 0.1187 S32: -0.1073 S33: 0.1026 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 552 THROUGH 569 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2559 17.4053 -3.2979 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.1553 REMARK 3 T33: 0.0823 T12: 0.0298 REMARK 3 T13: 0.0444 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 4.5709 L22: 3.1787 REMARK 3 L33: 4.4436 L12: 1.6117 REMARK 3 L13: 0.7957 L23: -1.7264 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: -0.3453 S13: 0.0499 REMARK 3 S21: 0.2698 S22: -0.1559 S23: -0.0235 REMARK 3 S31: -0.0343 S32: -0.0997 S33: 0.1882 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3576 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984463 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 153487 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 48.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X1W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM CHLORIDE, PEG 6000, CITRIC REMARK 280 ACID, PH 4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.07500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER. THERE IS 1 BIOLOGICAL UNIT REMARK 300 IN THE ASYMMETRIC UNIT (CHAINS A & B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 236 REMARK 465 ILE A 237 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 347 OG1 CG2 REMARK 470 THR B 480 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 281 OG SER A 504 2.11 REMARK 500 O HOH A 1013 O HOH B 1038 2.15 REMARK 500 OG1 THR A 480 O HOH A 1019 2.18 REMARK 500 O HOH A 1011 O HOH A 1012 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 712 O HOH B 746 2444 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 293 -109.08 -124.23 REMARK 500 ASP A 338 49.56 -86.84 REMARK 500 ASN A 365 -4.46 -147.71 REMARK 500 ASN A 387 71.42 -153.84 REMARK 500 ASP A 472 81.89 -153.49 REMARK 500 ALA B 293 -107.63 -123.56 REMARK 500 ASP B 338 47.74 -86.98 REMARK 500 ASN B 365 -4.32 -147.66 REMARK 500 ASN B 387 68.23 -151.36 REMARK 500 ASP B 472 79.08 -150.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 4X1X A 236 569 UNP I7FLU3 I7FLU3_RHDV 7 340 DBREF 4X1X B 236 569 UNP I7FLU3 I7FLU3_RHDV 7 340 SEQRES 1 A 334 SER ILE SER PRO ALA ASP LEU LEU THR THR PRO VAL LEU SEQRES 2 A 334 THR GLY VAL GLY THR ASP ASN ARG TRP ASN GLY GLU ILE SEQRES 3 A 334 VAL GLY LEU GLN PRO VAL PRO GLY GLY PHE SER THR CYS SEQRES 4 A 334 ASN ARG HIS TRP ASN LEU ASN GLY SER THR PHE GLY TRP SEQRES 5 A 334 SER SER PRO ARG PHE ALA ALA ILE ASP HIS ASP ARG GLY SEQRES 6 A 334 ASN ALA SER TYR PRO GLY SER SER SER SER ASN VAL LEU SEQRES 7 A 334 GLU LEU TRP TYR ALA SER ALA GLY SER ALA ALA ASP ASN SEQRES 8 A 334 PRO ILE SER GLN ILE ALA PRO ASP GLY PHE PRO ASP MET SEQRES 9 A 334 SER PHE VAL PRO PHE SER GLY THR THR VAL PRO THR ALA SEQRES 10 A 334 GLY TRP VAL GLY PHE GLY GLY ILE TRP ASN SER SER ASN SEQRES 11 A 334 GLY ALA PRO PHE VAL THR THR VAL GLN ALA TYR GLU LEU SEQRES 12 A 334 GLY PHE ALA THR GLY ALA PRO SER ASN PRO GLN PRO THR SEQRES 13 A 334 THR THR THR SER GLY ALA GLN ILE VAL ALA LYS SER ILE SEQRES 14 A 334 TYR GLY VAL ALA THR GLY ILE ASN GLN ALA THR ALA GLY SEQRES 15 A 334 LEU PHE VAL MET ALA SER GLY VAL ILE SER THR PRO ASN SEQRES 16 A 334 SER SER ALA ILE THR TYR THR PRO GLN PRO ASN ARG ILE SEQRES 17 A 334 VAL ASN ALA PRO GLY THR PRO ALA ALA ALA PRO ILE GLY SEQRES 18 A 334 LYS ASN THR PRO ILE MET PHE ALA SER VAL VAL ARG ARG SEQRES 19 A 334 THR GLY ASP ILE ASN ALA GLU ALA GLY SER THR ASN GLY SEQRES 20 A 334 THR GLN TYR GLY ALA GLY SER GLN PRO LEU PRO VAL THR SEQRES 21 A 334 VAL GLY LEU SER LEU ASN ASN TYR SER SER ALA LEU MET SEQRES 22 A 334 PRO GLY GLN PHE PHE VAL TRP GLN LEU ASN PHE ALA SER SEQRES 23 A 334 GLY PHE MET GLU LEU GLY LEU SER VAL ASP GLY TYR PHE SEQRES 24 A 334 TYR ALA GLY THR GLY ALA SER ALA THR LEU ILE ASP LEU SEQRES 25 A 334 SER GLU LEU VAL ASP ILE ARG PRO VAL GLY PRO ARG PRO SEQRES 26 A 334 SER THR SER THR LEU VAL TYR ASN LEU SEQRES 1 B 334 SER ILE SER PRO ALA ASP LEU LEU THR THR PRO VAL LEU SEQRES 2 B 334 THR GLY VAL GLY THR ASP ASN ARG TRP ASN GLY GLU ILE SEQRES 3 B 334 VAL GLY LEU GLN PRO VAL PRO GLY GLY PHE SER THR CYS SEQRES 4 B 334 ASN ARG HIS TRP ASN LEU ASN GLY SER THR PHE GLY TRP SEQRES 5 B 334 SER SER PRO ARG PHE ALA ALA ILE ASP HIS ASP ARG GLY SEQRES 6 B 334 ASN ALA SER TYR PRO GLY SER SER SER SER ASN VAL LEU SEQRES 7 B 334 GLU LEU TRP TYR ALA SER ALA GLY SER ALA ALA ASP ASN SEQRES 8 B 334 PRO ILE SER GLN ILE ALA PRO ASP GLY PHE PRO ASP MET SEQRES 9 B 334 SER PHE VAL PRO PHE SER GLY THR THR VAL PRO THR ALA SEQRES 10 B 334 GLY TRP VAL GLY PHE GLY GLY ILE TRP ASN SER SER ASN SEQRES 11 B 334 GLY ALA PRO PHE VAL THR THR VAL GLN ALA TYR GLU LEU SEQRES 12 B 334 GLY PHE ALA THR GLY ALA PRO SER ASN PRO GLN PRO THR SEQRES 13 B 334 THR THR THR SER GLY ALA GLN ILE VAL ALA LYS SER ILE SEQRES 14 B 334 TYR GLY VAL ALA THR GLY ILE ASN GLN ALA THR ALA GLY SEQRES 15 B 334 LEU PHE VAL MET ALA SER GLY VAL ILE SER THR PRO ASN SEQRES 16 B 334 SER SER ALA ILE THR TYR THR PRO GLN PRO ASN ARG ILE SEQRES 17 B 334 VAL ASN ALA PRO GLY THR PRO ALA ALA ALA PRO ILE GLY SEQRES 18 B 334 LYS ASN THR PRO ILE MET PHE ALA SER VAL VAL ARG ARG SEQRES 19 B 334 THR GLY ASP ILE ASN ALA GLU ALA GLY SER THR ASN GLY SEQRES 20 B 334 THR GLN TYR GLY ALA GLY SER GLN PRO LEU PRO VAL THR SEQRES 21 B 334 VAL GLY LEU SER LEU ASN ASN TYR SER SER ALA LEU MET SEQRES 22 B 334 PRO GLY GLN PHE PHE VAL TRP GLN LEU ASN PHE ALA SER SEQRES 23 B 334 GLY PHE MET GLU LEU GLY LEU SER VAL ASP GLY TYR PHE SEQRES 24 B 334 TYR ALA GLY THR GLY ALA SER ALA THR LEU ILE ASP LEU SEQRES 25 B 334 SER GLU LEU VAL ASP ILE ARG PRO VAL GLY PRO ARG PRO SEQRES 26 B 334 SER THR SER THR LEU VAL TYR ASN LEU HET NDG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET EDO A 601 4 HET CL A 602 1 HET CL A 603 1 HET EDO B 601 4 HET EDO B 602 4 HET CL B 603 1 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NDG C8 H15 N O6 FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUC C6 H12 O5 FORMUL 4 EDO 3(C2 H6 O2) FORMUL 5 CL 3(CL 1-) FORMUL 10 HOH *662(H2 O) HELIX 1 AA1 PRO A 239 LEU A 243 5 5 HELIX 2 AA2 THR A 244 THR A 249 1 6 HELIX 3 AA3 PHE A 369 VAL A 373 5 5 HELIX 4 AA4 GLN A 439 ILE A 443 5 5 HELIX 5 AA5 ARG A 469 ILE A 473 5 5 HELIX 6 AA6 PRO A 491 ASN A 501 1 11 HELIX 7 AA7 SER B 238 LEU B 243 5 6 HELIX 8 AA8 THR B 244 THR B 249 1 6 HELIX 9 AA9 PHE B 369 VAL B 373 5 5 HELIX 10 AB1 GLN B 439 ILE B 443 5 5 HELIX 11 AB2 ARG B 469 ILE B 473 5 5 HELIX 12 AB3 PRO B 491 ASN B 501 1 11 SHEET 1 AA1 6 TYR A 485 GLY A 488 0 SHEET 2 AA1 6 THR A 459 VAL A 466 -1 N PHE A 463 O GLY A 488 SHEET 3 AA1 6 PHE A 534 ALA A 536 -1 O ALA A 536 N THR A 459 SHEET 4 AA1 6 GLY A 522 LEU A 528 -1 N GLY A 527 O TYR A 535 SHEET 5 AA1 6 GLN A 511 PHE A 519 -1 N LEU A 517 O MET A 524 SHEET 6 AA1 6 LEU A 550 PRO A 560 -1 O ARG A 554 N GLN A 516 SHEET 1 AA2 6 ILE A 545 ASP A 546 0 SHEET 2 AA2 6 ILE A 261 PRO A 266 -1 N LEU A 264 O ILE A 545 SHEET 3 AA2 6 THR A 459 VAL A 466 -1 O MET A 462 N GLN A 265 SHEET 4 AA2 6 PHE A 534 ALA A 536 -1 O ALA A 536 N THR A 459 SHEET 5 AA2 6 GLY A 522 LEU A 528 -1 N GLY A 527 O TYR A 535 SHEET 6 AA2 6 TYR A 567 ASN A 568 -1 O ASN A 568 N PHE A 523 SHEET 1 AA3 4 GLN A 389 PRO A 390 0 SHEET 2 AA3 4 GLN A 374 THR A 382 -1 N THR A 382 O GLN A 389 SHEET 3 AA3 4 TRP A 354 TRP A 361 -1 N GLY A 356 O TYR A 376 SHEET 4 AA3 4 VAL A 425 ILE A 426 -1 O VAL A 425 N VAL A 355 SHEET 1 AA4 8 GLN A 389 PRO A 390 0 SHEET 2 AA4 8 GLN A 374 THR A 382 -1 N THR A 382 O GLN A 389 SHEET 3 AA4 8 GLN A 398 SER A 403 -1 O GLN A 398 N ALA A 381 SHEET 4 AA4 8 LEU A 315 SER A 319 -1 N TRP A 316 O ALA A 401 SHEET 5 AA4 8 ALA A 294 SER A 303 -1 N SER A 303 O LEU A 315 SHEET 6 AA4 8 GLN A 413 MET A 421 -1 O VAL A 420 N ILE A 295 SHEET 7 AA4 8 TRP A 354 TRP A 361 -1 N TRP A 361 O GLY A 417 SHEET 8 AA4 8 VAL A 425 ILE A 426 -1 O VAL A 425 N VAL A 355 SHEET 1 AA5 2 SER A 310 VAL A 312 0 SHEET 2 AA5 2 VAL A 407 THR A 409 -1 O VAL A 407 N VAL A 312 SHEET 1 AA6 6 TYR B 485 GLY B 488 0 SHEET 2 AA6 6 THR B 459 VAL B 466 -1 N PHE B 463 O GLY B 488 SHEET 3 AA6 6 PHE B 534 ALA B 536 -1 O ALA B 536 N THR B 459 SHEET 4 AA6 6 PHE B 523 LEU B 528 -1 N GLY B 527 O TYR B 535 SHEET 5 AA6 6 GLN B 511 PHE B 519 -1 N LEU B 517 O MET B 524 SHEET 6 AA6 6 LEU B 550 PRO B 560 -1 O ARG B 554 N GLN B 516 SHEET 1 AA7 6 ILE B 545 ASP B 546 0 SHEET 2 AA7 6 ILE B 261 PRO B 266 -1 N LEU B 264 O ILE B 545 SHEET 3 AA7 6 THR B 459 VAL B 466 -1 O MET B 462 N GLN B 265 SHEET 4 AA7 6 PHE B 534 ALA B 536 -1 O ALA B 536 N THR B 459 SHEET 5 AA7 6 PHE B 523 LEU B 528 -1 N GLY B 527 O TYR B 535 SHEET 6 AA7 6 TYR B 567 ASN B 568 -1 O ASN B 568 N PHE B 523 SHEET 1 AA8 4 GLN B 389 PRO B 390 0 SHEET 2 AA8 4 GLN B 374 THR B 382 -1 N THR B 382 O GLN B 389 SHEET 3 AA8 4 TRP B 354 TRP B 361 -1 N GLY B 356 O TYR B 376 SHEET 4 AA8 4 VAL B 425 ILE B 426 -1 O VAL B 425 N VAL B 355 SHEET 1 AA9 8 GLN B 389 PRO B 390 0 SHEET 2 AA9 8 GLN B 374 THR B 382 -1 N THR B 382 O GLN B 389 SHEET 3 AA9 8 GLN B 398 SER B 403 -1 O LYS B 402 N GLU B 377 SHEET 4 AA9 8 LEU B 315 SER B 319 -1 N TRP B 316 O ALA B 401 SHEET 5 AA9 8 ALA B 294 SER B 303 -1 N SER B 303 O LEU B 315 SHEET 6 AA9 8 GLN B 413 MET B 421 -1 O VAL B 420 N ILE B 295 SHEET 7 AA9 8 TRP B 354 TRP B 361 -1 N TRP B 361 O GLY B 417 SHEET 8 AA9 8 VAL B 425 ILE B 426 -1 O VAL B 425 N VAL B 355 SHEET 1 AB1 2 SER B 310 VAL B 312 0 SHEET 2 AB1 2 VAL B 407 THR B 409 -1 O VAL B 407 N VAL B 312 LINK O4 NDG C 1 C1 GAL C 2 1555 1555 1.41 LINK O2 GAL C 2 C1 FUC C 3 1555 1555 1.41 CISPEP 1 ALA A 384 PRO A 385 0 4.35 CISPEP 2 THR A 437 PRO A 438 0 0.73 CISPEP 3 ALA B 384 PRO B 385 0 3.67 CISPEP 4 THR B 437 PRO B 438 0 0.55 CRYST1 59.440 84.150 62.660 90.00 110.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016824 0.000000 0.006160 0.00000 SCALE2 0.000000 0.011884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016995 0.00000