HEADER VIRAL PROTEIN 25-NOV-14 4X1Z TITLE CRYSTAL STRUCTURE OF RHDVB P DOMAIN IN COMPLEX WITH H TYPE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 238-569; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RABBIT HEMORRHAGIC DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: RHDV; SOURCE 4 ORGANISM_TAXID: 11976; SOURCE 5 GENE: VP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MAJOR CAPSID PROTEIN, CAPSID SPIKE, PROTRUDING DOMAIN, HBGA BINDING, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.M.LEUTHOLD,G.S.HANSMAN REVDAT 4 10-JAN-24 4X1Z 1 HETSYN REVDAT 3 29-JUL-20 4X1Z 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 04-FEB-15 4X1Z 1 JRNL REVDAT 1 14-JAN-15 4X1Z 0 JRNL AUTH M.M.LEUTHOLD,K.P.DALTON,G.S.HANSMAN JRNL TITL STRUCTURAL ANALYSIS OF A RABBIT HEMORRHAGIC DISEASE VIRUS JRNL TITL 2 BINDING TO HISTO-BLOOD GROUP ANTIGENS. JRNL REF J.VIROL. V. 89 2378 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25505081 JRNL DOI 10.1128/JVI.02832-14 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 134435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.109 REMARK 3 R VALUE (WORKING SET) : 0.108 REMARK 3 FREE R VALUE : 0.132 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9996 - 4.2131 1.00 4549 240 0.1231 0.1341 REMARK 3 2 4.2131 - 3.3491 1.00 4383 231 0.1317 0.1397 REMARK 3 3 3.3491 - 2.9273 1.00 4329 229 0.1392 0.1537 REMARK 3 4 2.9273 - 2.6603 1.00 4344 228 0.1306 0.1502 REMARK 3 5 2.6603 - 2.4700 1.00 4323 228 0.1192 0.1409 REMARK 3 6 2.4700 - 2.3246 1.00 4280 226 0.1107 0.1379 REMARK 3 7 2.3246 - 2.2083 1.00 4297 225 0.1015 0.1127 REMARK 3 8 2.2083 - 2.1123 1.00 4224 222 0.1039 0.1217 REMARK 3 9 2.1123 - 2.0311 1.00 4286 225 0.1021 0.1261 REMARK 3 10 2.0311 - 1.9610 1.00 4256 224 0.0993 0.1327 REMARK 3 11 1.9610 - 1.8998 1.00 4270 225 0.0944 0.1116 REMARK 3 12 1.8998 - 1.8455 1.00 4281 224 0.0920 0.1116 REMARK 3 13 1.8455 - 1.7970 1.00 4219 223 0.0904 0.1371 REMARK 3 14 1.7970 - 1.7531 1.00 4269 224 0.0861 0.1045 REMARK 3 15 1.7531 - 1.7133 1.00 4232 223 0.0843 0.1293 REMARK 3 16 1.7133 - 1.6769 1.00 4241 224 0.0832 0.1220 REMARK 3 17 1.6769 - 1.6433 1.00 4265 224 0.0800 0.1235 REMARK 3 18 1.6433 - 1.6123 1.00 4222 222 0.0821 0.1314 REMARK 3 19 1.6123 - 1.5836 1.00 4237 224 0.0810 0.1162 REMARK 3 20 1.5836 - 1.5567 1.00 4242 223 0.0781 0.1196 REMARK 3 21 1.5567 - 1.5316 1.00 4206 221 0.0799 0.1261 REMARK 3 22 1.5316 - 1.5081 1.00 4277 226 0.0787 0.1271 REMARK 3 23 1.5081 - 1.4859 1.00 4216 220 0.0774 0.1282 REMARK 3 24 1.4859 - 1.4650 1.00 4173 220 0.0782 0.1247 REMARK 3 25 1.4650 - 1.4452 1.00 4275 225 0.0799 0.1184 REMARK 3 26 1.4452 - 1.4264 1.00 4226 223 0.0798 0.1152 REMARK 3 27 1.4264 - 1.4086 1.00 4188 220 0.0902 0.1404 REMARK 3 28 1.4086 - 1.3916 1.00 4243 224 0.0914 0.1655 REMARK 3 29 1.3916 - 1.3755 0.99 4198 221 0.1026 0.1386 REMARK 3 30 1.3755 - 1.3600 0.96 3962 208 0.1151 0.1511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5076 REMARK 3 ANGLE : 1.246 6984 REMARK 3 CHIRALITY : 0.048 800 REMARK 3 PLANARITY : 0.007 916 REMARK 3 DIHEDRAL : 11.307 1768 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3610 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984463 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 151500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X1W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM CHLORIDE, PEG 6000, CITRIC REMARK 280 ACID, PH 4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.08500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.84000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.84000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.08500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER. THERE IS 1 BIOLOGICAL UNIT REMARK 300 IN THE ASYMMETRIC UNIT (CHAINS A & B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 293 -106.54 -129.47 REMARK 500 ARG A 299 86.30 -150.38 REMARK 500 ASP A 338 48.30 -84.97 REMARK 500 ASN A 365 -4.99 -149.03 REMARK 500 ASN A 387 64.76 -157.30 REMARK 500 GLU A 476 -169.12 -129.20 REMARK 500 ALA B 293 -106.47 -129.22 REMARK 500 ARG B 299 86.06 -150.73 REMARK 500 ASP B 338 48.58 -84.87 REMARK 500 ASN B 365 -4.60 -149.28 REMARK 500 ASN B 387 64.95 -157.11 REMARK 500 GLU B 476 -168.85 -129.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 928 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 942 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 991 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 992 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A1061 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1076 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH A1115 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B 982 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B1001 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B1004 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B1056 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B1061 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH B1078 DISTANCE = 6.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 607 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 373 O REMARK 620 2 HOH A1109 O 94.9 REMARK 620 3 HOH B1106 O 115.9 91.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 394 OG1 REMARK 620 2 HOH A 987 O 95.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 864 O REMARK 620 2 HOH B 826 O 133.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 818 O REMARK 620 2 HOH A 881 O 88.3 REMARK 620 3 HOH A 892 O 149.5 80.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 776 O REMARK 620 2 HOH A 783 O 92.8 REMARK 620 3 HOH A 784 O 87.2 76.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 606 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 824 O REMARK 620 2 HOH B 857 O 134.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 607 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1109 O REMARK 620 2 VAL B 373 O 115.7 REMARK 620 3 HOH B1106 O 90.7 94.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 394 OG1 REMARK 620 2 HOH B 736 O 135.0 REMARK 620 3 HOH B 981 O 95.3 99.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 782 O REMARK 620 2 HOH B 883 O 150.4 REMARK 620 3 HOH B 890 O 88.4 80.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 774 O REMARK 620 2 HOH B 778 O 86.5 REMARK 620 3 HOH B 779 O 93.2 75.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 816 O REMARK 620 2 HOH B 864 O 97.4 REMARK 620 3 HOH B1044 O 108.2 145.1 REMARK 620 N 1 2 DBREF 4X1Z A 238 569 UNP I7FLU3 I7FLU3_RHDV 9 340 DBREF 4X1Z B 238 569 UNP I7FLU3 I7FLU3_RHDV 9 340 SEQRES 1 A 332 SER PRO ALA ASP LEU LEU THR THR PRO VAL LEU THR GLY SEQRES 2 A 332 VAL GLY THR ASP ASN ARG TRP ASN GLY GLU ILE VAL GLY SEQRES 3 A 332 LEU GLN PRO VAL PRO GLY GLY PHE SER THR CYS ASN ARG SEQRES 4 A 332 HIS TRP ASN LEU ASN GLY SER THR PHE GLY TRP SER SER SEQRES 5 A 332 PRO ARG PHE ALA ALA ILE ASP HIS ASP ARG GLY ASN ALA SEQRES 6 A 332 SER TYR PRO GLY SER SER SER SER ASN VAL LEU GLU LEU SEQRES 7 A 332 TRP TYR ALA SER ALA GLY SER ALA ALA ASP ASN PRO ILE SEQRES 8 A 332 SER GLN ILE ALA PRO ASP GLY PHE PRO ASP MET SER PHE SEQRES 9 A 332 VAL PRO PHE SER GLY THR THR VAL PRO THR ALA GLY TRP SEQRES 10 A 332 VAL GLY PHE GLY GLY ILE TRP ASN SER SER ASN GLY ALA SEQRES 11 A 332 PRO PHE VAL THR THR VAL GLN ALA TYR GLU LEU GLY PHE SEQRES 12 A 332 ALA THR GLY ALA PRO SER ASN PRO GLN PRO THR THR THR SEQRES 13 A 332 THR SER GLY ALA GLN ILE VAL ALA LYS SER ILE TYR GLY SEQRES 14 A 332 VAL ALA THR GLY ILE ASN GLN ALA THR ALA GLY LEU PHE SEQRES 15 A 332 VAL MET ALA SER GLY VAL ILE SER THR PRO ASN SER SER SEQRES 16 A 332 ALA ILE THR TYR THR PRO GLN PRO ASN ARG ILE VAL ASN SEQRES 17 A 332 ALA PRO GLY THR PRO ALA ALA ALA PRO ILE GLY LYS ASN SEQRES 18 A 332 THR PRO ILE MET PHE ALA SER VAL VAL ARG ARG THR GLY SEQRES 19 A 332 ASP ILE ASN ALA GLU ALA GLY SER THR ASN GLY THR GLN SEQRES 20 A 332 TYR GLY ALA GLY SER GLN PRO LEU PRO VAL THR VAL GLY SEQRES 21 A 332 LEU SER LEU ASN ASN TYR SER SER ALA LEU MET PRO GLY SEQRES 22 A 332 GLN PHE PHE VAL TRP GLN LEU ASN PHE ALA SER GLY PHE SEQRES 23 A 332 MET GLU LEU GLY LEU SER VAL ASP GLY TYR PHE TYR ALA SEQRES 24 A 332 GLY THR GLY ALA SER ALA THR LEU ILE ASP LEU SER GLU SEQRES 25 A 332 LEU VAL ASP ILE ARG PRO VAL GLY PRO ARG PRO SER THR SEQRES 26 A 332 SER THR LEU VAL TYR ASN LEU SEQRES 1 B 332 SER PRO ALA ASP LEU LEU THR THR PRO VAL LEU THR GLY SEQRES 2 B 332 VAL GLY THR ASP ASN ARG TRP ASN GLY GLU ILE VAL GLY SEQRES 3 B 332 LEU GLN PRO VAL PRO GLY GLY PHE SER THR CYS ASN ARG SEQRES 4 B 332 HIS TRP ASN LEU ASN GLY SER THR PHE GLY TRP SER SER SEQRES 5 B 332 PRO ARG PHE ALA ALA ILE ASP HIS ASP ARG GLY ASN ALA SEQRES 6 B 332 SER TYR PRO GLY SER SER SER SER ASN VAL LEU GLU LEU SEQRES 7 B 332 TRP TYR ALA SER ALA GLY SER ALA ALA ASP ASN PRO ILE SEQRES 8 B 332 SER GLN ILE ALA PRO ASP GLY PHE PRO ASP MET SER PHE SEQRES 9 B 332 VAL PRO PHE SER GLY THR THR VAL PRO THR ALA GLY TRP SEQRES 10 B 332 VAL GLY PHE GLY GLY ILE TRP ASN SER SER ASN GLY ALA SEQRES 11 B 332 PRO PHE VAL THR THR VAL GLN ALA TYR GLU LEU GLY PHE SEQRES 12 B 332 ALA THR GLY ALA PRO SER ASN PRO GLN PRO THR THR THR SEQRES 13 B 332 THR SER GLY ALA GLN ILE VAL ALA LYS SER ILE TYR GLY SEQRES 14 B 332 VAL ALA THR GLY ILE ASN GLN ALA THR ALA GLY LEU PHE SEQRES 15 B 332 VAL MET ALA SER GLY VAL ILE SER THR PRO ASN SER SER SEQRES 16 B 332 ALA ILE THR TYR THR PRO GLN PRO ASN ARG ILE VAL ASN SEQRES 17 B 332 ALA PRO GLY THR PRO ALA ALA ALA PRO ILE GLY LYS ASN SEQRES 18 B 332 THR PRO ILE MET PHE ALA SER VAL VAL ARG ARG THR GLY SEQRES 19 B 332 ASP ILE ASN ALA GLU ALA GLY SER THR ASN GLY THR GLN SEQRES 20 B 332 TYR GLY ALA GLY SER GLN PRO LEU PRO VAL THR VAL GLY SEQRES 21 B 332 LEU SER LEU ASN ASN TYR SER SER ALA LEU MET PRO GLY SEQRES 22 B 332 GLN PHE PHE VAL TRP GLN LEU ASN PHE ALA SER GLY PHE SEQRES 23 B 332 MET GLU LEU GLY LEU SER VAL ASP GLY TYR PHE TYR ALA SEQRES 24 B 332 GLY THR GLY ALA SER ALA THR LEU ILE ASP LEU SER GLU SEQRES 25 B 332 LEU VAL ASP ILE ARG PRO VAL GLY PRO ARG PRO SER THR SEQRES 26 B 332 SER THR LEU VAL TYR ASN LEU HET NDG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET NDG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET NA A 601 1 HET NA A 602 1 HET NA A 603 1 HET NA A 604 1 HET NA A 605 1 HET NA A 606 1 HET NA A 607 1 HET NA B 601 1 HET NA B 602 1 HET NA B 603 1 HET NA B 604 1 HET NA B 605 1 HET NA B 606 1 HET NA B 607 1 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM NA SODIUM ION HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NDG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 NA 14(NA 1+) FORMUL 19 HOH *828(H2 O) HELIX 1 AA1 SER A 238 LEU A 243 5 6 HELIX 2 AA2 THR A 244 THR A 249 1 6 HELIX 3 AA3 PHE A 369 VAL A 373 5 5 HELIX 4 AA4 GLN A 439 ILE A 443 5 5 HELIX 5 AA5 ARG A 469 ILE A 473 5 5 HELIX 6 AA6 PRO A 491 ASN A 501 1 11 HELIX 7 AA7 SER B 238 LEU B 243 5 6 HELIX 8 AA8 THR B 244 THR B 249 1 6 HELIX 9 AA9 PHE B 369 VAL B 373 5 5 HELIX 10 AB1 GLN B 439 ILE B 443 5 5 HELIX 11 AB2 ARG B 469 ILE B 473 5 5 HELIX 12 AB3 PRO B 491 ASN B 501 1 11 SHEET 1 AA1 6 TYR A 485 GLY A 488 0 SHEET 2 AA1 6 THR A 459 VAL A 466 -1 N PHE A 463 O GLY A 488 SHEET 3 AA1 6 PHE A 534 ALA A 536 -1 O ALA A 536 N THR A 459 SHEET 4 AA1 6 PHE A 523 LEU A 528 -1 N GLY A 527 O TYR A 535 SHEET 5 AA1 6 GLN A 511 PHE A 519 -1 N LEU A 517 O MET A 524 SHEET 6 AA1 6 LEU A 550 PRO A 560 -1 O ARG A 554 N GLN A 516 SHEET 1 AA2 6 ILE A 545 ASP A 546 0 SHEET 2 AA2 6 ILE A 261 PRO A 266 -1 N LEU A 264 O ILE A 545 SHEET 3 AA2 6 THR A 459 VAL A 466 -1 O MET A 462 N GLN A 265 SHEET 4 AA2 6 PHE A 534 ALA A 536 -1 O ALA A 536 N THR A 459 SHEET 5 AA2 6 PHE A 523 LEU A 528 -1 N GLY A 527 O TYR A 535 SHEET 6 AA2 6 TYR A 567 ASN A 568 -1 O ASN A 568 N PHE A 523 SHEET 1 AA3 4 GLN A 389 PRO A 390 0 SHEET 2 AA3 4 GLN A 374 THR A 382 -1 N THR A 382 O GLN A 389 SHEET 3 AA3 4 TRP A 354 TRP A 361 -1 N GLY A 356 O TYR A 376 SHEET 4 AA3 4 VAL A 425 ILE A 426 -1 O VAL A 425 N VAL A 355 SHEET 1 AA4 8 GLN A 389 PRO A 390 0 SHEET 2 AA4 8 GLN A 374 THR A 382 -1 N THR A 382 O GLN A 389 SHEET 3 AA4 8 GLN A 398 SER A 403 -1 O GLN A 398 N ALA A 381 SHEET 4 AA4 8 LEU A 315 SER A 319 -1 N TRP A 316 O ALA A 401 SHEET 5 AA4 8 ALA A 294 SER A 303 -1 N SER A 303 O LEU A 315 SHEET 6 AA4 8 GLN A 413 MET A 421 -1 O VAL A 420 N ILE A 295 SHEET 7 AA4 8 TRP A 354 TRP A 361 -1 N TRP A 361 O GLY A 417 SHEET 8 AA4 8 VAL A 425 ILE A 426 -1 O VAL A 425 N VAL A 355 SHEET 1 AA5 2 SER A 310 VAL A 312 0 SHEET 2 AA5 2 VAL A 407 THR A 409 -1 O VAL A 407 N VAL A 312 SHEET 1 AA6 6 TYR B 485 GLY B 488 0 SHEET 2 AA6 6 THR B 459 VAL B 466 -1 N PHE B 463 O GLY B 488 SHEET 3 AA6 6 PHE B 534 ALA B 536 -1 O ALA B 536 N THR B 459 SHEET 4 AA6 6 PHE B 523 LEU B 528 -1 N GLY B 527 O TYR B 535 SHEET 5 AA6 6 GLN B 511 PHE B 519 -1 N LEU B 517 O MET B 524 SHEET 6 AA6 6 LEU B 550 PRO B 560 -1 O ARG B 554 N GLN B 516 SHEET 1 AA7 6 ILE B 545 ASP B 546 0 SHEET 2 AA7 6 ILE B 261 PRO B 266 -1 N LEU B 264 O ILE B 545 SHEET 3 AA7 6 THR B 459 VAL B 466 -1 O MET B 462 N GLN B 265 SHEET 4 AA7 6 PHE B 534 ALA B 536 -1 O ALA B 536 N THR B 459 SHEET 5 AA7 6 PHE B 523 LEU B 528 -1 N GLY B 527 O TYR B 535 SHEET 6 AA7 6 TYR B 567 ASN B 568 -1 O ASN B 568 N PHE B 523 SHEET 1 AA8 4 GLN B 389 PRO B 390 0 SHEET 2 AA8 4 GLN B 374 THR B 382 -1 N THR B 382 O GLN B 389 SHEET 3 AA8 4 TRP B 354 TRP B 361 -1 N GLY B 356 O TYR B 376 SHEET 4 AA8 4 VAL B 425 ILE B 426 -1 O VAL B 425 N VAL B 355 SHEET 1 AA9 8 GLN B 389 PRO B 390 0 SHEET 2 AA9 8 GLN B 374 THR B 382 -1 N THR B 382 O GLN B 389 SHEET 3 AA9 8 GLN B 398 SER B 403 -1 O GLN B 398 N ALA B 381 SHEET 4 AA9 8 LEU B 315 SER B 319 -1 N TRP B 316 O ALA B 401 SHEET 5 AA9 8 ALA B 294 SER B 303 -1 N SER B 303 O LEU B 315 SHEET 6 AA9 8 GLN B 413 MET B 421 -1 O VAL B 420 N ILE B 295 SHEET 7 AA9 8 TRP B 354 TRP B 361 -1 N TRP B 361 O GLY B 417 SHEET 8 AA9 8 VAL B 425 ILE B 426 -1 O VAL B 425 N VAL B 355 SHEET 1 AB1 2 SER B 310 VAL B 312 0 SHEET 2 AB1 2 VAL B 407 THR B 409 -1 O VAL B 407 N VAL B 312 LINK O4 NDG C 1 C1 GAL C 2 1555 1555 1.41 LINK O2 GAL C 2 C1 FUC C 3 1555 1555 1.41 LINK O4 NDG D 1 C1 GAL D 2 1555 1555 1.41 LINK O2 GAL D 2 C1 FUC D 3 1555 1555 1.41 LINK O VAL A 373 NA NA A 607 1555 1555 2.72 LINK OG1 THR A 394 NA NA A 605 1555 1555 2.99 LINK NA NA A 601 O HOH A 864 1555 1555 3.20 LINK NA NA A 601 O HOH B 826 1555 1555 3.00 LINK NA NA A 602 O HOH A 818 1555 1555 3.18 LINK NA NA A 602 O HOH A 881 1555 1555 3.15 LINK NA NA A 602 O HOH A 892 1555 1555 3.09 LINK NA NA A 603 O HOH A 776 1555 1555 3.00 LINK NA NA A 603 O HOH A 783 1555 1555 3.14 LINK NA NA A 603 O HOH A 784 1555 1555 3.10 LINK NA NA A 604 O HOH A 900 1555 1555 3.17 LINK NA NA A 605 O HOH A 987 1555 1555 3.11 LINK NA NA A 606 O HOH B 724 1555 3747 3.16 LINK NA NA A 607 O HOH A1109 1555 1555 2.86 LINK NA NA A 607 O HOH B1106 1555 1555 2.62 LINK O HOH A 824 NA NA B 606 1555 1555 3.01 LINK O HOH A1109 NA NA B 607 1555 1555 2.63 LINK O VAL B 373 NA NA B 607 1555 1555 2.69 LINK OG1 THR B 394 NA NA B 603 1555 1555 2.98 LINK NA NA B 601 O HOH B 782 1555 1555 3.15 LINK NA NA B 601 O HOH B 883 1555 1555 3.09 LINK NA NA B 601 O HOH B 890 1555 1555 3.12 LINK NA NA B 602 O HOH B 774 1555 1555 3.00 LINK NA NA B 602 O HOH B 778 1555 1555 3.11 LINK NA NA B 602 O HOH B 779 1555 1555 3.13 LINK NA NA B 603 O HOH B 736 1555 1555 3.07 LINK NA NA B 603 O HOH B 981 1555 1555 3.13 LINK NA NA B 604 O HOH B 895 1555 1555 3.19 LINK NA NA B 605 O HOH B 816 1555 1555 3.15 LINK NA NA B 605 O HOH B 864 1555 1555 3.14 LINK NA NA B 605 O HOH B1044 1555 1555 2.91 LINK NA NA B 606 O HOH B 857 1555 1555 3.18 LINK NA NA B 607 O HOH B1106 1555 1555 2.90 CISPEP 1 ALA A 384 PRO A 385 0 7.90 CISPEP 2 THR A 437 PRO A 438 0 -2.53 CISPEP 3 ALA B 384 PRO B 385 0 7.65 CISPEP 4 THR B 437 PRO B 438 0 -2.41 CRYST1 76.170 76.210 107.680 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009287 0.00000