HEADER TRANSFERASE 26-NOV-14 4X2E TITLE CLOSTRIDIUM DIFFICILE WILD TYPE FIC PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIC FAMILY PROTEIN PUTATIVE FILAMENTATION INDUCED BY CAMP COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 645463; SOURCE 4 STRAIN: R20291; SOURCE 5 GENE: CDR20291_0569; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.JORGENSEN,E.DEDIC REVDAT 2 10-JAN-24 4X2E 1 REMARK REVDAT 1 23-DEC-15 4X2E 0 JRNL AUTH R.JORGENSEN,E.DEDIC,H.ALSARRAF,D.WELNER,H.C.VAN LEEUWEN, JRNL AUTH 2 O.OESTERGAARD JRNL TITL STRUCTURE OF WILD TYPE CLOSTRIDIUM DIFFICILE FIC_0569 AT 3.1 JRNL TITL 2 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 20454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9457 - 5.8937 1.00 3131 164 0.1981 0.2188 REMARK 3 2 5.8937 - 4.6981 1.00 3007 158 0.2238 0.2804 REMARK 3 3 4.6981 - 4.1102 1.00 2969 157 0.2278 0.2887 REMARK 3 4 4.1102 - 3.7371 1.00 2972 156 0.2578 0.2754 REMARK 3 5 3.7371 - 3.4707 1.00 2955 156 0.2785 0.3417 REMARK 3 6 3.4707 - 3.2670 1.00 2927 154 0.2918 0.3617 REMARK 3 7 3.2670 - 3.1040 0.50 1467 81 0.3516 0.3639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6700 REMARK 3 ANGLE : 0.733 9075 REMARK 3 CHIRALITY : 0.030 1035 REMARK 3 PLANARITY : 0.003 1142 REMARK 3 DIHEDRAL : 12.123 2442 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6747 -18.1285 -18.7580 REMARK 3 T TENSOR REMARK 3 T11: 0.3268 T22: -0.0269 REMARK 3 T33: 0.4824 T12: 0.0463 REMARK 3 T13: -0.0195 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.5583 L22: 4.0551 REMARK 3 L33: 1.7182 L12: -1.3305 REMARK 3 L13: 0.6434 L23: -0.7196 REMARK 3 S TENSOR REMARK 3 S11: 0.0796 S12: 0.0221 S13: 0.3306 REMARK 3 S21: -0.0265 S22: -0.0804 S23: -0.1399 REMARK 3 S31: -0.2640 S32: -0.0877 S33: -0.0371 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3124 -17.8798 10.2936 REMARK 3 T TENSOR REMARK 3 T11: 0.3299 T22: 0.0847 REMARK 3 T33: 0.6011 T12: -0.0399 REMARK 3 T13: -0.1170 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.0861 L22: 2.7341 REMARK 3 L33: 2.5642 L12: 0.3071 REMARK 3 L13: 0.2161 L23: 0.2729 REMARK 3 S TENSOR REMARK 3 S11: -0.1127 S12: -0.0854 S13: 0.5192 REMARK 3 S21: 0.0398 S22: -0.2248 S23: 0.3443 REMARK 3 S31: -0.4504 S32: -0.1691 S33: -0.1011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 4 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1594 -20.7621 35.0592 REMARK 3 T TENSOR REMARK 3 T11: 0.5514 T22: 0.2742 REMARK 3 T33: 0.4976 T12: -0.3608 REMARK 3 T13: -0.1508 T23: 0.0816 REMARK 3 L TENSOR REMARK 3 L11: 1.7434 L22: 3.1744 REMARK 3 L33: 1.1012 L12: 1.2154 REMARK 3 L13: -0.1452 L23: -1.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.0912 S12: -0.3854 S13: -0.0215 REMARK 3 S21: 0.5524 S22: -0.3452 S23: -0.5782 REMARK 3 S31: -0.1123 S32: 0.1445 S33: -0.1789 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 7 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8411 -51.3601 44.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.8526 T22: 0.7752 REMARK 3 T33: 0.5108 T12: -0.5068 REMARK 3 T13: 0.1981 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 1.7695 L22: 1.9240 REMARK 3 L33: 1.2231 L12: 1.1033 REMARK 3 L13: 1.1027 L23: 0.4373 REMARK 3 S TENSOR REMARK 3 S11: 0.3243 S12: -0.5885 S13: 0.0819 REMARK 3 S21: 0.8423 S22: -0.4857 S23: 0.5146 REMARK 3 S31: -0.0673 S32: -0.3120 S33: 0.0387 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3753 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 3753 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 3753 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8729 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22213 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.020 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.41 REMARK 200 R MERGE FOR SHELL (I) : 1.06900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 4X2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % (W/V) PEG 8000, 0.2 M MGCL2, 0.1 REMARK 280 M HEPES PH 7.5., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.34500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 131.34500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.71000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.68500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.71000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.68500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 131.34500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.71000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.68500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 131.34500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.71000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.68500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -28.71000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -78.68500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 28.71000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -78.68500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 57.42000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -57.42000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 SER A 103 REMARK 465 ARG A 104 REMARK 465 GLY A 105 REMARK 465 MET A 106 REMARK 465 ALA A 107 REMARK 465 GLY A 108 REMARK 465 ILE A 109 REMARK 465 TYR A 110 REMARK 465 LYS A 111 REMARK 465 THR A 112 REMARK 465 ILE A 113 REMARK 465 PRO A 114 REMARK 465 ASN A 115 REMARK 465 MET A 116 REMARK 465 ILE A 117 REMARK 465 LEU A 118 REMARK 465 GLY A 119 REMARK 465 THR A 120 REMARK 465 ASP A 121 REMARK 465 VAL A 122 REMARK 465 SER A 123 REMARK 465 ILE A 124 REMARK 465 ALA A 125 REMARK 465 GLN A 126 REMARK 465 PRO A 127 REMARK 465 PHE A 128 REMARK 465 LEU A 231 REMARK 465 TRP A 232 REMARK 465 LYS A 233 REMARK 465 LEU A 234 REMARK 465 GLU A 235 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 SER B 103 REMARK 465 ARG B 104 REMARK 465 GLY B 105 REMARK 465 MET B 106 REMARK 465 ALA B 107 REMARK 465 GLY B 108 REMARK 465 ILE B 109 REMARK 465 TYR B 110 REMARK 465 LYS B 111 REMARK 465 THR B 112 REMARK 465 ILE B 113 REMARK 465 PRO B 114 REMARK 465 ASN B 115 REMARK 465 MET B 116 REMARK 465 ILE B 117 REMARK 465 LEU B 118 REMARK 465 GLY B 119 REMARK 465 THR B 120 REMARK 465 ASP B 121 REMARK 465 VAL B 122 REMARK 465 SER B 123 REMARK 465 ILE B 124 REMARK 465 ALA B 125 REMARK 465 GLN B 126 REMARK 465 PRO B 127 REMARK 465 PHE B 128 REMARK 465 GLU B 129 REMARK 465 VAL B 130 REMARK 465 GLU B 235 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 ASN C 3 REMARK 465 THR C 100 REMARK 465 LEU C 101 REMARK 465 HIS C 102 REMARK 465 SER C 103 REMARK 465 ARG C 104 REMARK 465 GLY C 105 REMARK 465 MET C 106 REMARK 465 ALA C 107 REMARK 465 GLY C 108 REMARK 465 ILE C 109 REMARK 465 TYR C 110 REMARK 465 LYS C 111 REMARK 465 THR C 112 REMARK 465 ILE C 113 REMARK 465 PRO C 114 REMARK 465 ASN C 115 REMARK 465 MET C 116 REMARK 465 ILE C 117 REMARK 465 LEU C 118 REMARK 465 GLY C 119 REMARK 465 THR C 120 REMARK 465 ASP C 121 REMARK 465 VAL C 122 REMARK 465 SER C 123 REMARK 465 ILE C 124 REMARK 465 ALA C 125 REMARK 465 GLN C 126 REMARK 465 PRO C 127 REMARK 465 PHE C 128 REMARK 465 LYS C 233 REMARK 465 LEU C 234 REMARK 465 GLU C 235 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 ASN D 3 REMARK 465 SER D 4 REMARK 465 PHE D 5 REMARK 465 LEU D 6 REMARK 465 SER D 103 REMARK 465 ARG D 104 REMARK 465 GLY D 105 REMARK 465 MET D 106 REMARK 465 ALA D 107 REMARK 465 GLY D 108 REMARK 465 ILE D 109 REMARK 465 TYR D 110 REMARK 465 LYS D 111 REMARK 465 THR D 112 REMARK 465 ILE D 113 REMARK 465 PRO D 114 REMARK 465 ASN D 115 REMARK 465 MET D 116 REMARK 465 ILE D 117 REMARK 465 LEU D 118 REMARK 465 GLY D 119 REMARK 465 THR D 120 REMARK 465 ASP D 121 REMARK 465 VAL D 122 REMARK 465 SER D 123 REMARK 465 ILE D 124 REMARK 465 ALA D 125 REMARK 465 GLN D 126 REMARK 465 PRO D 127 REMARK 465 PHE D 128 REMARK 465 GLU D 129 REMARK 465 VAL D 130 REMARK 465 TYR D 228 REMARK 465 LYS D 229 REMARK 465 MET D 230 REMARK 465 LEU D 231 REMARK 465 TRP D 232 REMARK 465 LYS D 233 REMARK 465 LEU D 234 REMARK 465 GLU D 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 102 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 131 CG CD OE1 OE2 REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 LYS C 229 CG CD CE NZ REMARK 470 MET C 230 CG SD CE REMARK 470 LYS D 8 CG CD CE NZ REMARK 470 LYS D 13 CG CD CE NZ REMARK 470 HIS D 102 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 189 CG CD CE NZ REMARK 470 GLU D 196 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR B 217 OG SER B 220 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 80 -3.21 73.27 REMARK 500 ASP A 197 61.51 67.78 REMARK 500 TYR A 228 52.38 -116.84 REMARK 500 LYS B 80 -6.32 70.16 REMARK 500 THR B 100 7.26 -67.80 REMARK 500 TYR B 228 52.48 -113.81 REMARK 500 LYS B 233 -177.55 -67.73 REMARK 500 LYS C 80 -3.56 73.27 REMARK 500 TYR C 228 50.16 -112.97 REMARK 500 LYS D 80 -6.31 71.30 REMARK 500 GLU D 196 -14.52 -49.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 4X2E A 1 233 UNP C9YJ22 C9YJ22_PEPDR 1 233 DBREF 4X2E B 1 233 UNP C9YJ22 C9YJ22_PEPDR 1 233 DBREF 4X2E C 1 233 UNP C9YJ22 C9YJ22_PEPDR 1 233 DBREF 4X2E D 1 233 UNP C9YJ22 C9YJ22_PEPDR 1 233 SEQADV 4X2E LEU A 234 UNP C9YJ22 EXPRESSION TAG SEQADV 4X2E GLU A 235 UNP C9YJ22 EXPRESSION TAG SEQADV 4X2E LEU B 234 UNP C9YJ22 EXPRESSION TAG SEQADV 4X2E GLU B 235 UNP C9YJ22 EXPRESSION TAG SEQADV 4X2E LEU C 234 UNP C9YJ22 EXPRESSION TAG SEQADV 4X2E GLU C 235 UNP C9YJ22 EXPRESSION TAG SEQADV 4X2E LEU D 234 UNP C9YJ22 EXPRESSION TAG SEQADV 4X2E GLU D 235 UNP C9YJ22 EXPRESSION TAG SEQRES 1 A 235 MET ASN ASN SER PHE LEU ASP LYS LEU ILE GLU THR LYS SEQRES 2 A 235 GLU LEU LYS ASN SER LEU TYR ASN VAL LEU LYS HIS ASN SEQRES 3 A 235 PHE LEU TYR HIS SER ASN LYS ILE GLU GLY SER THR PHE SEQRES 4 A 235 THR THR GLU ALA LEU ALA LEU LEU LEU ASP LYS ASN VAL SEQRES 5 A 235 VAL THR GLY ARG HIS THR LEU ASP ASP VAL GLN GLU THR SEQRES 6 A 235 VAL ASN SER SER TYR VAL PHE ASP THR VAL ILE ASP SER SEQRES 7 A 235 LEU LYS GLU LYS ILE THR HIS ASN PHE LEU ARG ASN LEU SEQRES 8 A 235 HIS SER SER LEU ILE PHE ASN THR THR LEU HIS SER ARG SEQRES 9 A 235 GLY MET ALA GLY ILE TYR LYS THR ILE PRO ASN MET ILE SEQRES 10 A 235 LEU GLY THR ASP VAL SER ILE ALA GLN PRO PHE GLU VAL SEQRES 11 A 235 GLU PRO LYS LEU ASP GLU LEU ILE GLU TRP TYR TYR SER SEQRES 12 A 235 GLN SER GLU VAL SER ILE LYS VAL ILE ALA GLU PHE HIS SEQRES 13 A 235 TYR ARG PHE GLU LEU ILE HIS PRO PHE GLN ASP GLY ASN SEQRES 14 A 235 GLY ARG ILE GLY ARG PHE VAL MET LEU LYS GLN MET LEU SEQRES 15 A 235 GLU ASN ASN LEU PRO ILE LYS ILE VAL SER TRP ASP SER SEQRES 16 A 235 GLU ASP LEU TYR ARG ASN SER LEU ASN SER CYS SER LEU SEQRES 17 A 235 GLY ASN TYR VAL PRO LEU ILE GLU TYR LEU SER SER LEU SEQRES 18 A 235 GLU ASP PHE ARG GLU VAL TYR LYS MET LEU TRP LYS LEU SEQRES 19 A 235 GLU SEQRES 1 B 235 MET ASN ASN SER PHE LEU ASP LYS LEU ILE GLU THR LYS SEQRES 2 B 235 GLU LEU LYS ASN SER LEU TYR ASN VAL LEU LYS HIS ASN SEQRES 3 B 235 PHE LEU TYR HIS SER ASN LYS ILE GLU GLY SER THR PHE SEQRES 4 B 235 THR THR GLU ALA LEU ALA LEU LEU LEU ASP LYS ASN VAL SEQRES 5 B 235 VAL THR GLY ARG HIS THR LEU ASP ASP VAL GLN GLU THR SEQRES 6 B 235 VAL ASN SER SER TYR VAL PHE ASP THR VAL ILE ASP SER SEQRES 7 B 235 LEU LYS GLU LYS ILE THR HIS ASN PHE LEU ARG ASN LEU SEQRES 8 B 235 HIS SER SER LEU ILE PHE ASN THR THR LEU HIS SER ARG SEQRES 9 B 235 GLY MET ALA GLY ILE TYR LYS THR ILE PRO ASN MET ILE SEQRES 10 B 235 LEU GLY THR ASP VAL SER ILE ALA GLN PRO PHE GLU VAL SEQRES 11 B 235 GLU PRO LYS LEU ASP GLU LEU ILE GLU TRP TYR TYR SER SEQRES 12 B 235 GLN SER GLU VAL SER ILE LYS VAL ILE ALA GLU PHE HIS SEQRES 13 B 235 TYR ARG PHE GLU LEU ILE HIS PRO PHE GLN ASP GLY ASN SEQRES 14 B 235 GLY ARG ILE GLY ARG PHE VAL MET LEU LYS GLN MET LEU SEQRES 15 B 235 GLU ASN ASN LEU PRO ILE LYS ILE VAL SER TRP ASP SER SEQRES 16 B 235 GLU ASP LEU TYR ARG ASN SER LEU ASN SER CYS SER LEU SEQRES 17 B 235 GLY ASN TYR VAL PRO LEU ILE GLU TYR LEU SER SER LEU SEQRES 18 B 235 GLU ASP PHE ARG GLU VAL TYR LYS MET LEU TRP LYS LEU SEQRES 19 B 235 GLU SEQRES 1 C 235 MET ASN ASN SER PHE LEU ASP LYS LEU ILE GLU THR LYS SEQRES 2 C 235 GLU LEU LYS ASN SER LEU TYR ASN VAL LEU LYS HIS ASN SEQRES 3 C 235 PHE LEU TYR HIS SER ASN LYS ILE GLU GLY SER THR PHE SEQRES 4 C 235 THR THR GLU ALA LEU ALA LEU LEU LEU ASP LYS ASN VAL SEQRES 5 C 235 VAL THR GLY ARG HIS THR LEU ASP ASP VAL GLN GLU THR SEQRES 6 C 235 VAL ASN SER SER TYR VAL PHE ASP THR VAL ILE ASP SER SEQRES 7 C 235 LEU LYS GLU LYS ILE THR HIS ASN PHE LEU ARG ASN LEU SEQRES 8 C 235 HIS SER SER LEU ILE PHE ASN THR THR LEU HIS SER ARG SEQRES 9 C 235 GLY MET ALA GLY ILE TYR LYS THR ILE PRO ASN MET ILE SEQRES 10 C 235 LEU GLY THR ASP VAL SER ILE ALA GLN PRO PHE GLU VAL SEQRES 11 C 235 GLU PRO LYS LEU ASP GLU LEU ILE GLU TRP TYR TYR SER SEQRES 12 C 235 GLN SER GLU VAL SER ILE LYS VAL ILE ALA GLU PHE HIS SEQRES 13 C 235 TYR ARG PHE GLU LEU ILE HIS PRO PHE GLN ASP GLY ASN SEQRES 14 C 235 GLY ARG ILE GLY ARG PHE VAL MET LEU LYS GLN MET LEU SEQRES 15 C 235 GLU ASN ASN LEU PRO ILE LYS ILE VAL SER TRP ASP SER SEQRES 16 C 235 GLU ASP LEU TYR ARG ASN SER LEU ASN SER CYS SER LEU SEQRES 17 C 235 GLY ASN TYR VAL PRO LEU ILE GLU TYR LEU SER SER LEU SEQRES 18 C 235 GLU ASP PHE ARG GLU VAL TYR LYS MET LEU TRP LYS LEU SEQRES 19 C 235 GLU SEQRES 1 D 235 MET ASN ASN SER PHE LEU ASP LYS LEU ILE GLU THR LYS SEQRES 2 D 235 GLU LEU LYS ASN SER LEU TYR ASN VAL LEU LYS HIS ASN SEQRES 3 D 235 PHE LEU TYR HIS SER ASN LYS ILE GLU GLY SER THR PHE SEQRES 4 D 235 THR THR GLU ALA LEU ALA LEU LEU LEU ASP LYS ASN VAL SEQRES 5 D 235 VAL THR GLY ARG HIS THR LEU ASP ASP VAL GLN GLU THR SEQRES 6 D 235 VAL ASN SER SER TYR VAL PHE ASP THR VAL ILE ASP SER SEQRES 7 D 235 LEU LYS GLU LYS ILE THR HIS ASN PHE LEU ARG ASN LEU SEQRES 8 D 235 HIS SER SER LEU ILE PHE ASN THR THR LEU HIS SER ARG SEQRES 9 D 235 GLY MET ALA GLY ILE TYR LYS THR ILE PRO ASN MET ILE SEQRES 10 D 235 LEU GLY THR ASP VAL SER ILE ALA GLN PRO PHE GLU VAL SEQRES 11 D 235 GLU PRO LYS LEU ASP GLU LEU ILE GLU TRP TYR TYR SER SEQRES 12 D 235 GLN SER GLU VAL SER ILE LYS VAL ILE ALA GLU PHE HIS SEQRES 13 D 235 TYR ARG PHE GLU LEU ILE HIS PRO PHE GLN ASP GLY ASN SEQRES 14 D 235 GLY ARG ILE GLY ARG PHE VAL MET LEU LYS GLN MET LEU SEQRES 15 D 235 GLU ASN ASN LEU PRO ILE LYS ILE VAL SER TRP ASP SER SEQRES 16 D 235 GLU ASP LEU TYR ARG ASN SER LEU ASN SER CYS SER LEU SEQRES 17 D 235 GLY ASN TYR VAL PRO LEU ILE GLU TYR LEU SER SER LEU SEQRES 18 D 235 GLU ASP PHE ARG GLU VAL TYR LYS MET LEU TRP LYS LEU SEQRES 19 D 235 GLU HELIX 1 AA1 SER A 4 THR A 12 1 9 HELIX 2 AA2 SER A 18 GLU A 35 1 18 HELIX 3 AA3 THR A 40 ASN A 51 1 12 HELIX 4 AA4 THR A 58 SER A 78 1 21 HELIX 5 AA5 THR A 84 ILE A 96 1 13 HELIX 6 AA6 VAL A 130 TYR A 142 1 13 HELIX 7 AA7 SER A 148 HIS A 163 1 16 HELIX 8 AA8 GLY A 168 ASN A 184 1 17 HELIX 9 AA9 ASP A 197 CYS A 206 1 10 HELIX 10 AB1 TYR A 211 LEU A 221 1 11 HELIX 11 AB2 ASP A 223 TYR A 228 1 6 HELIX 12 AB3 PHE B 5 THR B 12 1 8 HELIX 13 AB4 SER B 18 GLU B 35 1 18 HELIX 14 AB5 THR B 40 ASN B 51 1 12 HELIX 15 AB6 THR B 58 SER B 78 1 21 HELIX 16 AB7 THR B 84 ILE B 96 1 13 HELIX 17 AB8 PRO B 132 TYR B 142 1 11 HELIX 18 AB9 SER B 148 HIS B 163 1 16 HELIX 19 AC1 GLY B 168 ASN B 184 1 17 HELIX 20 AC2 SER B 195 CYS B 206 1 12 HELIX 21 AC3 TYR B 211 LEU B 221 1 11 HELIX 22 AC4 ASP B 223 TYR B 228 1 6 HELIX 23 AC5 TYR B 228 LYS B 233 1 6 HELIX 24 AC6 PHE C 5 THR C 12 1 8 HELIX 25 AC7 SER C 18 GLU C 35 1 18 HELIX 26 AC8 THR C 40 ASN C 51 1 12 HELIX 27 AC9 THR C 58 SER C 78 1 21 HELIX 28 AD1 THR C 84 ILE C 96 1 13 HELIX 29 AD2 VAL C 130 TYR C 142 1 13 HELIX 30 AD3 SER C 148 HIS C 163 1 16 HELIX 31 AD4 GLY C 168 ASN C 184 1 17 HELIX 32 AD5 ASP C 197 CYS C 206 1 10 HELIX 33 AD6 TYR C 211 LEU C 221 1 11 HELIX 34 AD7 ASP C 223 TYR C 228 1 6 HELIX 35 AD8 LYS D 8 THR D 12 1 5 HELIX 36 AD9 SER D 18 GLU D 35 1 18 HELIX 37 AE1 THR D 40 ASN D 51 1 12 HELIX 38 AE2 THR D 58 SER D 78 1 21 HELIX 39 AE3 THR D 84 ILE D 96 1 13 HELIX 40 AE4 PRO D 132 TYR D 142 1 11 HELIX 41 AE5 SER D 148 HIS D 163 1 16 HELIX 42 AE6 GLY D 168 ASN D 184 1 17 HELIX 43 AE7 SER D 195 CYS D 206 1 12 HELIX 44 AE8 TYR D 211 LEU D 221 1 11 HELIX 45 AE9 ASP D 223 VAL D 227 5 5 CRYST1 57.420 157.370 262.690 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006354 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003807 0.00000