HEADER HYDROLASE 27-NOV-14 4X2W TITLE CRYSTAL STRUCTURE OF THE MURINE NOROVIRUS NS6 PROTEASE (INACTIVE C139A TITLE 2 MUTANT) WITH A C-TERMINAL EXTENSION TO INCLUDE RESIDUES P1 PRIME - P2 TITLE 3 PRIME OF NS7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS6 PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 997-1175; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURINE NOROVIRUS 1; SOURCE 3 ORGANISM_TAXID: 223997; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: CODONPLUS KEYWDS MURINE NOROVIRUS PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.FERNANDES,E.N.LEEN,S.CURRY REVDAT 4 10-JAN-24 4X2W 1 REMARK REVDAT 3 18-MAR-15 4X2W 1 JRNL REVDAT 2 25-FEB-15 4X2W 1 JRNL REVDAT 1 18-FEB-15 4X2W 0 JRNL AUTH H.FERNANDES,E.N.LEEN,H.CROMWELL,M.P.PFEIL,S.CURRY JRNL TITL STRUCTURE DETERMINATION OF MURINE NOROVIRUS NS6 PROTEASES JRNL TITL 2 WITH C-TERMINAL EXTENSIONS DESIGNED TO PROBE JRNL TITL 3 PROTEASE-SUBSTRATE INTERACTIONS. JRNL REF PEERJ V. 3 E798 2015 JRNL REFN ESSN 2167-8359 JRNL PMID 25755927 JRNL DOI 10.7717/PEERJ.798 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.N.LEEN,G.BAEZA,S.CURRY REMARK 1 TITL STRUCTURE OF A MURINE NOROVIRUS NS6 PROTEASE-PRODUCT COMPLEX REMARK 1 TITL 2 REVEALED BY ADVENTITIOUS CRYSTALLISATION. REMARK 1 REF PLOS ONE V. 7 38723 2012 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 22685603 REMARK 1 DOI 10.1371/JOURNAL.PONE.0038723 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 117.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.4 REMARK 3 NUMBER OF REFLECTIONS : 8555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 469 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 139 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 16.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3950 REMARK 3 BIN FREE R VALUE SET COUNT : 11 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -3.21000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.487 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.534 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 67.360 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2622 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2520 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3565 ; 1.608 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5785 ; 1.129 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 8.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;28.317 ;22.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;15.731 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2958 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 594 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1379 ; 1.178 ; 2.465 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1378 ; 1.178 ; 2.464 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1718 ; 2.166 ; 3.688 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 181 B 4 181 8802 0.170 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2926 95.0973 87.4157 REMARK 3 T TENSOR REMARK 3 T11: 0.6323 T22: 0.0463 REMARK 3 T33: 0.3524 T12: -0.1315 REMARK 3 T13: -0.0849 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 6.4118 L22: 5.8139 REMARK 3 L33: 7.8662 L12: 1.3608 REMARK 3 L13: -0.6724 L23: -0.1496 REMARK 3 S TENSOR REMARK 3 S11: -0.3530 S12: 0.1345 S13: -0.0139 REMARK 3 S21: 0.1825 S22: 0.1922 S23: -0.2696 REMARK 3 S31: 0.5666 S32: -0.3947 S33: 0.1608 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0722 114.9208 107.1030 REMARK 3 T TENSOR REMARK 3 T11: 0.8080 T22: 0.2898 REMARK 3 T33: 0.6194 T12: 0.2141 REMARK 3 T13: 0.0357 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 4.1189 L22: 7.6535 REMARK 3 L33: 7.9747 L12: -0.4909 REMARK 3 L13: 2.0457 L23: -0.1924 REMARK 3 S TENSOR REMARK 3 S11: 0.0841 S12: 0.4669 S13: -0.0165 REMARK 3 S21: 0.0355 S22: 0.0826 S23: 0.7932 REMARK 3 S31: -0.5622 S32: -1.0079 S33: -0.1667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4X2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 117.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.91500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ASH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (V/V) PEG 3350, 0.1 M GLYCINE, 0.1 REMARK 280 M NA-CITRATE PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.46000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.92000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.19000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.65000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.73000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.46000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.92000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.65000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 41.19000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.73000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 ASN A 126 REMARK 465 ALA A 127 REMARK 465 LYS A 128 REMARK 465 ALA A 129 REMARK 465 VAL B 3 REMARK 465 ASN B 126 REMARK 465 ALA B 127 REMARK 465 LYS B 128 REMARK 465 ALA B 129 REMARK 465 GLN B 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 75 O HIS B 172 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O MET B 94 O MET B 94 8678 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 107 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 86.70 -165.12 REMARK 500 ALA A 105 130.57 -174.38 REMARK 500 TRP B 6 -6.41 81.28 REMARK 500 GLN B 104 53.71 -95.25 REMARK 500 ILE B 107 138.39 -175.83 REMARK 500 LYS B 108 42.30 70.34 REMARK 500 ARG B 162 -71.25 -57.44 REMARK 500 THR B 176 54.30 -96.03 REMARK 500 GLU B 178 -125.12 54.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 108 ILE A 109 144.16 REMARK 500 ILE B 107 LYS B 108 142.42 REMARK 500 LEU B 132 GLY B 133 149.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ASH RELATED DB: PDB REMARK 900 THIS ENTRY CONTAINS C TERMINAL EXTENSION TO INCLUDE RESIDUE P1 REMARK 900 PRIME AND P2 PRIME OF NS7 IN ADDITION TO 4ASH REMARK 900 RELATED ID: 4X2V RELATED DB: PDB DBREF 4X2W A 3 181 UNP Q80J95 Q80J95_9CALI 997 1175 DBREF 4X2W B 3 181 UNP Q80J95 Q80J95_9CALI 997 1175 SEQADV 4X2W ALA A 139 UNP Q80J95 CYS 1133 ENGINEERED MUTATION SEQADV 4X2W ALA B 139 UNP Q80J95 CYS 1133 ENGINEERED MUTATION SEQRES 1 A 179 VAL SER ILE TRP SER ARG VAL VAL GLN PHE GLY THR GLY SEQRES 2 A 179 TRP GLY PHE TRP VAL SER GLY HIS VAL PHE ILE THR ALA SEQRES 3 A 179 LYS HIS VAL ALA PRO PRO LYS GLY THR GLU ILE PHE GLY SEQRES 4 A 179 ARG LYS PRO GLY ASP PHE THR VAL THR SER SER GLY ASP SEQRES 5 A 179 PHE LEU LYS TYR TYR PHE THR SER ALA VAL ARG PRO ASP SEQRES 6 A 179 ILE PRO ALA MET VAL LEU GLU ASN GLY CYS GLN GLU GLY SEQRES 7 A 179 VAL VAL ALA SER VAL LEU VAL LYS ARG ALA SER GLY GLU SEQRES 8 A 179 MET LEU ALA LEU ALA VAL ARG MET GLY SER GLN ALA ALA SEQRES 9 A 179 ILE LYS ILE GLY SER ALA VAL VAL HIS GLY GLN THR GLY SEQRES 10 A 179 MET LEU LEU THR GLY SER ASN ALA LYS ALA GLN ASP LEU SEQRES 11 A 179 GLY THR ILE PRO GLY ASP ALA GLY CYS PRO TYR VAL TYR SEQRES 12 A 179 LYS LYS GLY ASN THR TRP VAL VAL ILE GLY VAL HIS VAL SEQRES 13 A 179 ALA ALA THR ARG SER GLY ASN THR VAL ILE ALA ALA THR SEQRES 14 A 179 HIS GLY GLU PRO THR LEU GLU ALA LEU GLU SEQRES 1 B 179 VAL SER ILE TRP SER ARG VAL VAL GLN PHE GLY THR GLY SEQRES 2 B 179 TRP GLY PHE TRP VAL SER GLY HIS VAL PHE ILE THR ALA SEQRES 3 B 179 LYS HIS VAL ALA PRO PRO LYS GLY THR GLU ILE PHE GLY SEQRES 4 B 179 ARG LYS PRO GLY ASP PHE THR VAL THR SER SER GLY ASP SEQRES 5 B 179 PHE LEU LYS TYR TYR PHE THR SER ALA VAL ARG PRO ASP SEQRES 6 B 179 ILE PRO ALA MET VAL LEU GLU ASN GLY CYS GLN GLU GLY SEQRES 7 B 179 VAL VAL ALA SER VAL LEU VAL LYS ARG ALA SER GLY GLU SEQRES 8 B 179 MET LEU ALA LEU ALA VAL ARG MET GLY SER GLN ALA ALA SEQRES 9 B 179 ILE LYS ILE GLY SER ALA VAL VAL HIS GLY GLN THR GLY SEQRES 10 B 179 MET LEU LEU THR GLY SER ASN ALA LYS ALA GLN ASP LEU SEQRES 11 B 179 GLY THR ILE PRO GLY ASP ALA GLY CYS PRO TYR VAL TYR SEQRES 12 B 179 LYS LYS GLY ASN THR TRP VAL VAL ILE GLY VAL HIS VAL SEQRES 13 B 179 ALA ALA THR ARG SER GLY ASN THR VAL ILE ALA ALA THR SEQRES 14 B 179 HIS GLY GLU PRO THR LEU GLU ALA LEU GLU HELIX 1 AA1 VAL A 3 SER A 7 5 5 SHEET 1 AA1 5 VAL A 9 PHE A 12 0 SHEET 2 AA1 5 GLY A 15 TRP A 19 -1 O GLY A 17 N VAL A 10 SHEET 3 AA1 5 VAL A 24 ALA A 28 -1 O ILE A 26 N PHE A 18 SHEET 4 AA1 5 PHE A 55 PHE A 60 -1 O TYR A 58 N PHE A 25 SHEET 5 AA1 5 PHE A 47 SER A 52 -1 N THR A 48 O TYR A 59 SHEET 1 AA211 VAL A 72 LEU A 73 0 SHEET 2 AA211 THR A 150 ALA A 160 1 O VAL A 153 N VAL A 72 SHEET 3 AA211 PRO A 142 LYS A 147 -1 N LYS A 147 O THR A 150 SHEET 4 AA211 VAL A 82 LYS A 88 -1 N SER A 84 O VAL A 144 SHEET 5 AA211 MET A 94 ILE A 109 -1 O LEU A 97 N VAL A 85 SHEET 6 AA211 ALA A 112 LEU A 121 -1 O THR A 118 N GLY A 102 SHEET 7 AA211 PHE B 47 SER B 52 1 O SER B 51 N VAL A 113 SHEET 8 AA211 PHE B 55 PHE B 60 -1 O TYR B 59 N THR B 48 SHEET 9 AA211 VAL B 24 ALA B 28 -1 N PHE B 25 O TYR B 58 SHEET 10 AA211 GLY B 15 TRP B 19 -1 N PHE B 18 O ILE B 26 SHEET 11 AA211 VAL B 10 PHE B 12 -1 N PHE B 12 O GLY B 15 SHEET 1 AA3 9 VAL A 72 LEU A 73 0 SHEET 2 AA3 9 THR A 150 ALA A 160 1 O VAL A 153 N VAL A 72 SHEET 3 AA3 9 THR A 166 ALA A 170 -1 O ILE A 168 N ALA A 159 SHEET 4 AA3 9 ALA A 112 LEU A 121 -1 N GLY A 119 O VAL A 167 SHEET 5 AA3 9 PHE B 47 SER B 52 1 O SER B 51 N VAL A 113 SHEET 6 AA3 9 PHE B 55 PHE B 60 -1 O TYR B 59 N THR B 48 SHEET 7 AA3 9 VAL B 24 ALA B 28 -1 N PHE B 25 O TYR B 58 SHEET 8 AA3 9 GLY B 15 TRP B 19 -1 N PHE B 18 O ILE B 26 SHEET 9 AA3 9 VAL B 10 PHE B 12 -1 N PHE B 12 O GLY B 15 SHEET 1 AA4 8 VAL B 72 LEU B 73 0 SHEET 2 AA4 8 THR B 150 ALA B 160 1 O VAL B 153 N VAL B 72 SHEET 3 AA4 8 THR B 166 ALA B 170 -1 O ALA B 170 N VAL B 156 SHEET 4 AA4 8 GLN B 117 LEU B 121 -1 N GLY B 119 O VAL B 167 SHEET 5 AA4 8 MET B 94 MET B 101 -1 N ARG B 100 O MET B 120 SHEET 6 AA4 8 VAL B 82 LYS B 88 -1 N VAL B 85 O LEU B 97 SHEET 7 AA4 8 PRO B 142 LYS B 147 -1 O PRO B 142 N LEU B 86 SHEET 8 AA4 8 THR B 150 ALA B 160 -1 O ILE B 154 N TYR B 143 CRYST1 135.940 135.940 82.380 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007356 0.004247 0.000000 0.00000 SCALE2 0.000000 0.008494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012139 0.00000