HEADER LIGASE 28-NOV-14 4X3G TITLE CRYSTAL STRUCTURE OF SIAH1 SINA DOMAIN IN COMPLEX WITH A USP19 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE SIAH1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SINA DOMAIN, RESIDUES 91-282; COMPND 5 SYNONYM: SEVEN IN ABSENTIA HOMOLOG 1,SIAH-1,SIAH-1A; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: SIAH1 BINDING MOTIF (SBM), RESIDUES 461-474; COMPND 12 SYNONYM: DEUBIQUITINATING ENZYME 19,UBIQUITIN THIOESTERASE 19, COMPND 13 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 19,ZINC FINGER MYND DOMAIN- COMPND 14 CONTAINING PROTEIN 9; COMPND 15 EC: 3.4.19.12; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIAH1, HUMSIAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: V2R-PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS LIGASE, UBIQUITIN-PROTEIN LIGASE, HYDROLASE, UBIQUITIN SPECIFIC KEYWDS 2 PROTEASE, PROTEIN-PEPTIDE COMPLEX, SGC EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,A.DONG,Q.ZHANG,X.HUANG,Y.LI,C.BOUNTRA,A.M.EDWARDS, AUTHOR 2 C.H.ARROWSMITH,Y.TONG,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 27-SEP-23 4X3G 1 REMARK REVDAT 3 24-JAN-18 4X3G 1 JRNL REMARK REVDAT 2 27-APR-16 4X3G 1 REMARK DBREF1 SHEET ATOM REVDAT 1 31-DEC-14 4X3G 0 JRNL AUTH J.R.WALKER,A.DONG,Q.ZHANG,X.HUANG,Y.LI,C.BOUNTRA, JRNL AUTH 2 A.M.EDWARDS,C.H.ARROWSMITH,Y.TONG, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF SIAH1 SINA DOMAIN IN COMPLEX WITH A JRNL TITL 2 USP19 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 15802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 780 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2173 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2350 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2074 REMARK 3 BIN R VALUE (WORKING SET) : 0.2334 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.56 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 99 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3079 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.77680 REMARK 3 B22 (A**2) : -19.35440 REMARK 3 B33 (A**2) : 14.57760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.85720 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.500 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.508 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.265 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.540 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.271 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3190 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4335 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1068 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 77 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 464 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3190 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 4 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 429 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3399 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.97 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.94 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|91 - A|602 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.1113 1.3490 8.9114 REMARK 3 T TENSOR REMARK 3 T11: -0.1890 T22: 0.2088 REMARK 3 T33: -0.2220 T12: 0.0877 REMARK 3 T13: 0.0554 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.5397 L22: 3.5326 REMARK 3 L33: 1.0883 L12: 0.7306 REMARK 3 L13: -0.1151 L23: -0.9236 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: 0.5033 S13: 0.1379 REMARK 3 S21: -0.1022 S22: 0.3811 S23: -0.0983 REMARK 3 S31: -0.0781 S32: -0.3051 S33: -0.2917 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|93 - B|602 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.6407 -32.1396 20.7236 REMARK 3 T TENSOR REMARK 3 T11: -0.1227 T22: 0.0658 REMARK 3 T33: -0.2069 T12: -0.2242 REMARK 3 T13: 0.0648 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.8854 L22: 3.7359 REMARK 3 L33: 2.9621 L12: 1.0955 REMARK 3 L13: 0.9953 L23: -1.2797 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.1945 S13: -0.2247 REMARK 3 S21: -0.3883 S22: 0.0574 S23: -0.4302 REMARK 3 S31: 0.7702 S32: -0.6147 S33: -0.0322 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15818 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4I7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SIAH1 AT 17.6 MG/ML WAS MIXED WITH A REMARK 280 TWO-FOLD EXCESS OF USP19 PEPTIDE ON ICE FOR 30 MIN. BEFORE REMARK 280 SETTING UP FOR CRYSTALLIZATION. CRYSTALS WERE GROWN AT 298K REMARK 280 USING THE SITTING DROP METHOD BY MIXING 0.5 UL PROTEIN:PEPTIDE REMARK 280 MIX WITH 0.5 UL WELL SOLUTION CONSISTING OF 20% PEG6000, 0.1 M REMARK 280 BICINE PH 9.0. THE CRYSTALS WERE CRYOPROTECTED BY FIRST REMARK 280 IMMERSION IN WELL SOLUTION MIXED WITH 15% (FINAL) ETHYLENE REMARK 280 GLYCOL, THEN IMMERSION IN N-PARATONE., VAPOR DIFFUSION, SITTING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.04600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 90 REMARK 465 GLY A 132 REMARK 465 ASP A 200 REMARK 465 GLY A 201 REMARK 465 HIS A 202 REMARK 465 GLY B 90 REMARK 465 ALA B 91 REMARK 465 ASN B 92 REMARK 465 SER C 461 REMARK 465 HIS C 473 REMARK 465 SER C 474 REMARK 465 SER D 461 REMARK 465 PRO D 462 REMARK 465 HIS D 473 REMARK 465 SER D 474 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 92 CG OD1 ND2 REMARK 470 LYS A 99 CD CE NZ REMARK 470 LYS A 136 NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 TYR A 199 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 HIS B 150 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 200 CG OD1 OD2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 HIS B 230 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 231 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 92 -11.66 62.68 REMARK 500 CYS A 256 -178.33 -170.28 REMARK 500 ASP A 260 -164.38 -107.74 REMARK 500 TYR B 100 33.53 -98.10 REMARK 500 ASP B 255 55.56 -91.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 98 SG REMARK 620 2 CYS A 105 SG 111.1 REMARK 620 3 HIS A 117 NE2 117.2 99.6 REMARK 620 4 CYS A 121 SG 108.4 119.2 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 CYS A 135 SG 109.7 REMARK 620 3 HIS A 147 NE2 90.9 109.3 REMARK 620 4 HIS A 152 NE2 115.7 127.9 94.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 98 SG REMARK 620 2 CYS B 105 SG 111.0 REMARK 620 3 HIS B 117 NE2 112.4 101.9 REMARK 620 4 CYS B 121 SG 126.7 105.5 95.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 128 SG REMARK 620 2 CYS B 135 SG 101.8 REMARK 620 3 HIS B 147 NE2 110.3 101.6 REMARK 620 4 HIS B 152 NE2 112.1 104.5 123.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C9Z RELATED DB: PDB REMARK 900 SAME PROTEIN DOMAIN AS CHAINS A AND B. DBREF 4X3G A 91 282 UNP Q8IUQ4 SIAH1_HUMAN 91 282 DBREF 4X3G B 91 282 UNP Q8IUQ4 SIAH1_HUMAN 91 282 DBREF 4X3G C 461 474 UNP O94966 UBP19_HUMAN 461 474 DBREF 4X3G D 461 474 UNP O94966 UBP19_HUMAN 461 474 SEQADV 4X3G GLY A 90 UNP Q8IUQ4 EXPRESSION TAG SEQADV 4X3G GLY B 90 UNP Q8IUQ4 EXPRESSION TAG SEQRES 1 A 193 GLY ALA ASN SER VAL LEU PHE PRO CYS LYS TYR ALA SER SEQRES 2 A 193 SER GLY CYS GLU ILE THR LEU PRO HIS THR GLU LYS ALA SEQRES 3 A 193 ASP HIS GLU GLU LEU CYS GLU PHE ARG PRO TYR SER CYS SEQRES 4 A 193 PRO CYS PRO GLY ALA SER CYS LYS TRP GLN GLY SER LEU SEQRES 5 A 193 ASP ALA VAL MET PRO HIS LEU MET HIS GLN HIS LYS SER SEQRES 6 A 193 ILE THR THR LEU GLN GLY GLU ASP ILE VAL PHE LEU ALA SEQRES 7 A 193 THR ASP ILE ASN LEU PRO GLY ALA VAL ASP TRP VAL MET SEQRES 8 A 193 MET GLN SER CYS PHE GLY PHE HIS PHE MET LEU VAL LEU SEQRES 9 A 193 GLU LYS GLN GLU LYS TYR ASP GLY HIS GLN GLN PHE PHE SEQRES 10 A 193 ALA ILE VAL GLN LEU ILE GLY THR ARG LYS GLN ALA GLU SEQRES 11 A 193 ASN PHE ALA TYR ARG LEU GLU LEU ASN GLY HIS ARG ARG SEQRES 12 A 193 ARG LEU THR TRP GLU ALA THR PRO ARG SER ILE HIS GLU SEQRES 13 A 193 GLY ILE ALA THR ALA ILE MET ASN SER ASP CYS LEU VAL SEQRES 14 A 193 PHE ASP THR SER ILE ALA GLN LEU PHE ALA GLU ASN GLY SEQRES 15 A 193 ASN LEU GLY ILE ASN VAL THR ILE SER MET CYS SEQRES 1 B 193 GLY ALA ASN SER VAL LEU PHE PRO CYS LYS TYR ALA SER SEQRES 2 B 193 SER GLY CYS GLU ILE THR LEU PRO HIS THR GLU LYS ALA SEQRES 3 B 193 ASP HIS GLU GLU LEU CYS GLU PHE ARG PRO TYR SER CYS SEQRES 4 B 193 PRO CYS PRO GLY ALA SER CYS LYS TRP GLN GLY SER LEU SEQRES 5 B 193 ASP ALA VAL MET PRO HIS LEU MET HIS GLN HIS LYS SER SEQRES 6 B 193 ILE THR THR LEU GLN GLY GLU ASP ILE VAL PHE LEU ALA SEQRES 7 B 193 THR ASP ILE ASN LEU PRO GLY ALA VAL ASP TRP VAL MET SEQRES 8 B 193 MET GLN SER CYS PHE GLY PHE HIS PHE MET LEU VAL LEU SEQRES 9 B 193 GLU LYS GLN GLU LYS TYR ASP GLY HIS GLN GLN PHE PHE SEQRES 10 B 193 ALA ILE VAL GLN LEU ILE GLY THR ARG LYS GLN ALA GLU SEQRES 11 B 193 ASN PHE ALA TYR ARG LEU GLU LEU ASN GLY HIS ARG ARG SEQRES 12 B 193 ARG LEU THR TRP GLU ALA THR PRO ARG SER ILE HIS GLU SEQRES 13 B 193 GLY ILE ALA THR ALA ILE MET ASN SER ASP CYS LEU VAL SEQRES 14 B 193 PHE ASP THR SER ILE ALA GLN LEU PHE ALA GLU ASN GLY SEQRES 15 B 193 ASN LEU GLY ILE ASN VAL THR ILE SER MET CYS SEQRES 1 C 14 SER PRO LYS PRO THR CYS MET VAL PRO PRO MET PRO HIS SEQRES 2 C 14 SER SEQRES 1 D 14 SER PRO LYS PRO THR CYS MET VAL PRO PRO MET PRO HIS SEQRES 2 D 14 SER HET ZN A 601 1 HET ZN A 602 1 HET ZN B 601 1 HET ZN B 602 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *56(H2 O) HELIX 1 AA1 HIS A 111 CYS A 121 1 11 HELIX 2 AA2 SER A 140 ASP A 142 5 3 HELIX 3 AA3 ALA A 143 HIS A 152 1 10 HELIX 4 AA4 THR A 214 GLU A 219 1 6 HELIX 5 AA5 ILE A 247 ASN A 253 1 7 HELIX 6 AA6 THR A 261 PHE A 267 1 7 HELIX 7 AA7 PRO B 110 GLU B 119 1 10 HELIX 8 AA8 SER B 140 ASP B 142 5 3 HELIX 9 AA9 ALA B 143 GLN B 151 1 9 HELIX 10 AB1 THR B 214 GLU B 219 1 6 HELIX 11 AB2 ILE B 247 ASN B 253 1 7 HELIX 12 AB3 THR B 261 ALA B 268 1 8 SHEET 1 AA1 2 LEU A 95 PRO A 97 0 SHEET 2 AA1 2 THR A 108 PRO A 110 -1 O LEU A 109 N PHE A 96 SHEET 1 AA2 2 TYR A 126 SER A 127 0 SHEET 2 AA2 2 GLN A 138 GLY A 139 -1 O GLY A 139 N TYR A 126 SHEET 1 AA3 5 THR A 157 GLN A 159 0 SHEET 2 AA3 5 ASP A 177 CYS A 184 1 O SER A 183 N LEU A 158 SHEET 3 AA3 5 PHE A 187 GLN A 196 -1 O LEU A 193 N TRP A 178 SHEET 4 AA3 5 GLN A 204 LEU A 211 -1 O GLN A 204 N GLN A 196 SHEET 5 AA3 5 ARG A 241 SER A 242 1 O ARG A 241 N LEU A 211 SHEET 1 AA4 5 THR A 157 GLN A 159 0 SHEET 2 AA4 5 ASP A 177 CYS A 184 1 O SER A 183 N LEU A 158 SHEET 3 AA4 5 PHE A 187 GLN A 196 -1 O LEU A 193 N TRP A 178 SHEET 4 AA4 5 GLN A 204 LEU A 211 -1 O GLN A 204 N GLN A 196 SHEET 5 AA4 5 LEU A 257 ASP A 260 -1 O PHE A 259 N PHE A 205 SHEET 1 AA5 4 ALA A 268 GLU A 269 0 SHEET 2 AA5 4 ASN A 272 MET A 281 -1 O ASN A 272 N GLU A 269 SHEET 3 AA5 4 ASP A 162 THR A 168 -1 N PHE A 165 O ILE A 275 SHEET 4 AA5 4 THR C 465 VAL C 468 1 O VAL C 468 N LEU A 166 SHEET 1 AA6 9 ALA A 268 GLU A 269 0 SHEET 2 AA6 9 ASN A 272 MET A 281 -1 O ASN A 272 N GLU A 269 SHEET 3 AA6 9 PHE A 221 GLY A 229 -1 N GLU A 226 O ASN A 276 SHEET 4 AA6 9 ARG A 232 ALA A 238 -1 O TRP A 236 N LEU A 225 SHEET 5 AA6 9 ARG B 232 ALA B 238 -1 O THR B 235 N THR A 235 SHEET 6 AA6 9 PHE B 221 ASN B 228 -1 N LEU B 225 O TRP B 236 SHEET 7 AA6 9 LEU B 273 MET B 281 -1 O SER B 280 N ALA B 222 SHEET 8 AA6 9 ASP B 162 ALA B 167 -1 N PHE B 165 O ILE B 275 SHEET 9 AA6 9 THR D 465 VAL D 468 1 O VAL D 468 N LEU B 166 SHEET 1 AA7 2 PHE B 96 PRO B 97 0 SHEET 2 AA7 2 THR B 108 LEU B 109 -1 O LEU B 109 N PHE B 96 SHEET 1 AA8 2 TYR B 126 SER B 127 0 SHEET 2 AA8 2 GLN B 138 GLY B 139 -1 O GLY B 139 N TYR B 126 SHEET 1 AA9 5 THR B 157 GLN B 159 0 SHEET 2 AA9 5 VAL B 176 CYS B 184 1 O SER B 183 N LEU B 158 SHEET 3 AA9 5 PHE B 187 TYR B 199 -1 O LYS B 195 N VAL B 176 SHEET 4 AA9 5 HIS B 202 LEU B 211 -1 O GLN B 204 N GLN B 196 SHEET 5 AA9 5 ARG B 241 SER B 242 1 O ARG B 241 N LEU B 211 SHEET 1 AB1 5 THR B 157 GLN B 159 0 SHEET 2 AB1 5 VAL B 176 CYS B 184 1 O SER B 183 N LEU B 158 SHEET 3 AB1 5 PHE B 187 TYR B 199 -1 O LYS B 195 N VAL B 176 SHEET 4 AB1 5 HIS B 202 LEU B 211 -1 O GLN B 204 N GLN B 196 SHEET 5 AB1 5 LEU B 257 ASP B 260 -1 O PHE B 259 N PHE B 205 LINK SG CYS A 98 ZN ZN A 602 1555 1555 2.46 LINK SG CYS A 105 ZN ZN A 602 1555 1555 2.17 LINK NE2 HIS A 117 ZN ZN A 602 1555 1555 2.66 LINK SG CYS A 121 ZN ZN A 602 1555 1555 2.19 LINK SG CYS A 128 ZN ZN A 601 1555 1555 2.17 LINK SG CYS A 135 ZN ZN A 601 1555 1555 2.40 LINK NE2 HIS A 147 ZN ZN A 601 1555 1555 2.29 LINK NE2 HIS A 152 ZN ZN A 601 1555 1555 1.92 LINK SG CYS B 98 ZN ZN B 602 1555 1555 2.32 LINK SG CYS B 105 ZN ZN B 602 1555 1555 2.34 LINK NE2 HIS B 117 ZN ZN B 602 1555 1555 2.58 LINK SG CYS B 121 ZN ZN B 602 1555 1555 2.33 LINK SG CYS B 128 ZN ZN B 601 1555 1555 2.46 LINK SG CYS B 135 ZN ZN B 601 1555 1555 2.27 LINK NE2 HIS B 147 ZN ZN B 601 1555 1555 2.23 LINK NE2 HIS B 152 ZN ZN B 601 1555 1555 1.93 SITE 1 AC1 4 CYS A 128 CYS A 135 HIS A 147 HIS A 152 SITE 1 AC2 4 CYS A 98 CYS A 105 HIS A 117 CYS A 121 SITE 1 AC3 4 CYS B 128 CYS B 135 HIS B 147 HIS B 152 SITE 1 AC4 4 CYS B 98 CYS B 105 HIS B 117 CYS B 121 CRYST1 41.343 88.092 59.590 90.00 103.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024188 0.000000 0.005691 0.00000 SCALE2 0.000000 0.011352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017240 0.00000