HEADER TRANSFERASE 02-DEC-14 4X46 TITLE X-RAY STRUCTURE THYMIDINE PHOSPHORYLASE FROM SALMONELLA TYPHIMURIUM TITLE 2 COMPLEX WITH SO4 AT 2.19 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE PHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TDRPASE; COMPND 5 EC: 2.4.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: DEOA, STM4568; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THYMIDINE PHOSPHORYLASE, NUCLEOSIDE, METABOLISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.V.BALAEV,A.A.LASHKOV,I.I.PROKOFEV,A.G.GABDOULKHAKOV,C.BETZEL, AUTHOR 2 A.M.MIKHAILOV REVDAT 3 10-JAN-24 4X46 1 REMARK REVDAT 2 21-NOV-18 4X46 1 SOURCE REVDAT 1 23-DEC-15 4X46 0 JRNL AUTH V.V.BALAEV,A.A.LASHKOV,I.I.PROKOFEV,A.G.GABDOULKHAKOV, JRNL AUTH 2 C.BETZEL,A.M.MIKHAILOV JRNL TITL X-RAY STRUCTURE THYMIDINE PHOSPHORYLASE FROM SALMONELLA JRNL TITL 2 TYPHIMURIUM COMPLEX WITH SO4 AT 2.19 A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 47158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3451 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 573 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.283 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.308 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6845 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9258 ; 1.234 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 893 ; 5.694 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 279 ;37.533 ;24.122 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1169 ;15.352 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;20.764 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1077 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5071 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3569 ; 2.994 ; 5.121 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4460 ; 4.541 ; 7.667 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3276 ; 3.721 ; 5.504 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4X46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47158 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EAF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE, 1.6 AMMONIUM SULFATE, PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 94.96350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 94.96350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.97900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 94.96350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 94.96350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.97900 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 94.96350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 94.96350 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.97900 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 94.96350 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 94.96350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.97900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 -176.03 62.33 REMARK 500 LEU A 75 -20.51 91.99 REMARK 500 ASN A 252 -75.44 -119.66 REMARK 500 LYS A 321 10.42 80.70 REMARK 500 TYR A 435 -126.09 -103.91 REMARK 500 PHE B 2 44.50 78.07 REMARK 500 LEU B 3 -169.23 175.80 REMARK 500 ALA B 4 58.71 -91.15 REMARK 500 SER B 113 -164.67 -110.60 REMARK 500 PHE B 136 74.86 -118.22 REMARK 500 MET B 242 37.68 -151.54 REMARK 500 ASN B 252 -79.34 -121.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 759 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 881 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 844 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B 848 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 861 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH B 863 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 864 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH B 867 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 869 DISTANCE = 9.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 506 DBREF 4X46 A 1 440 UNP Q7CP66 TYPH_SALTY 1 440 DBREF 4X46 B 1 440 UNP Q7CP66 TYPH_SALTY 1 440 SEQRES 1 A 440 MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS ARG ASP SEQRES 2 A 440 GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE PHE ILE SEQRES 3 A 440 ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY GLN ILE SEQRES 4 A 440 ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP MET THR SEQRES 5 A 440 MET PRO GLU ARG VAL SER LEU THR MET ALA MET ARG ASP SEQRES 6 A 440 SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN LEU ASN SEQRES 7 A 440 GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 A 440 ASP VAL THR SER LEU MET LEU GLY PRO MET VAL ALA ALA SEQRES 9 A 440 CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG GLY LEU SEQRES 10 A 440 GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU ALA ILE SEQRES 11 A 440 PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG PHE ARG SEQRES 12 A 440 GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE GLY GLN SEQRES 13 A 440 THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE TYR ALA SEQRES 14 A 440 THR ARG ASP ILE THR ALA THR VAL ASP SER ILE PRO LEU SEQRES 15 A 440 ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA GLU GLY SEQRES 16 A 440 LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SER GLY SEQRES 17 A 440 ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA LEU ALA SEQRES 18 A 440 GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY VAL ARG SEQRES 19 A 440 THR THR ALA LEU LEU THR ASP MET ASN GLN VAL LEU ALA SEQRES 20 A 440 SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU ALA VAL SEQRES 21 A 440 GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG LEU PHE SEQRES 22 A 440 ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU ILE SER SEQRES 23 A 440 GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG ALA LYS SEQRES 24 A 440 LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA GLU VAL SEQRES 25 A 440 PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SER ASP SEQRES 26 A 440 PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR ALA MET SEQRES 27 A 440 LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY PHE ILE SEQRES 28 A 440 SER ALA MET ASP THR ARG ALA LEU GLY MET ALA VAL VAL SEQRES 29 A 440 SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP THR ILE SEQRES 30 A 440 ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG LEU GLY SEQRES 31 A 440 ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL ILE HIS SEQRES 32 A 440 ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA LYS ALA SEQRES 33 A 440 VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA PRO ALA SEQRES 34 A 440 SER THR PRO SER VAL TYR ARG ARG ILE THR GLU SEQRES 1 B 440 MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS ARG ASP SEQRES 2 B 440 GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE PHE ILE SEQRES 3 B 440 ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY GLN ILE SEQRES 4 B 440 ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP MET THR SEQRES 5 B 440 MET PRO GLU ARG VAL SER LEU THR MET ALA MET ARG ASP SEQRES 6 B 440 SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN LEU ASN SEQRES 7 B 440 GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 B 440 ASP VAL THR SER LEU MET LEU GLY PRO MET VAL ALA ALA SEQRES 9 B 440 CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG GLY LEU SEQRES 10 B 440 GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU ALA ILE SEQRES 11 B 440 PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG PHE ARG SEQRES 12 B 440 GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE GLY GLN SEQRES 13 B 440 THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE TYR ALA SEQRES 14 B 440 THR ARG ASP ILE THR ALA THR VAL ASP SER ILE PRO LEU SEQRES 15 B 440 ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA GLU GLY SEQRES 16 B 440 LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SER GLY SEQRES 17 B 440 ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA LEU ALA SEQRES 18 B 440 GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY VAL ARG SEQRES 19 B 440 THR THR ALA LEU LEU THR ASP MET ASN GLN VAL LEU ALA SEQRES 20 B 440 SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU ALA VAL SEQRES 21 B 440 GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG LEU PHE SEQRES 22 B 440 ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU ILE SER SEQRES 23 B 440 GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG ALA LYS SEQRES 24 B 440 LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA GLU VAL SEQRES 25 B 440 PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SER ASP SEQRES 26 B 440 PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR ALA MET SEQRES 27 B 440 LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY PHE ILE SEQRES 28 B 440 SER ALA MET ASP THR ARG ALA LEU GLY MET ALA VAL VAL SEQRES 29 B 440 SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP THR ILE SEQRES 30 B 440 ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG LEU GLY SEQRES 31 B 440 ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL ILE HIS SEQRES 32 B 440 ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA LYS ALA SEQRES 33 B 440 VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA PRO ALA SEQRES 34 B 440 SER THR PRO SER VAL TYR ARG ARG ILE THR GLU HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET SO4 B 505 5 HET SO4 B 506 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 SO4 12(O4 S 2-) FORMUL 18 HOH *573(H2 O) HELIX 1 AA1 ALA A 4 ASP A 13 1 10 HELIX 2 AA2 SER A 18 ASP A 31 1 14 HELIX 3 AA3 SER A 35 ASP A 50 1 16 HELIX 4 AA4 THR A 52 SER A 66 1 15 HELIX 5 AA5 VAL A 93 CYS A 105 1 13 HELIX 6 AA6 GLY A 122 GLU A 128 1 7 HELIX 7 AA7 ASP A 138 VAL A 149 1 12 HELIX 8 AA8 ALA A 163 ASP A 172 1 10 HELIX 9 AA9 SER A 179 ALA A 193 1 15 HELIX 10 AB1 THR A 213 ALA A 231 1 19 HELIX 11 AB2 ASN A 252 GLY A 265 1 14 HELIX 12 AB3 ASN A 269 GLY A 287 1 19 HELIX 13 AB4 ASP A 292 ASN A 306 1 15 HELIX 14 AB5 GLY A 307 GLN A 320 1 14 HELIX 15 AB6 ASN A 329 LEU A 334 1 6 HELIX 16 AB7 ASP A 355 GLY A 367 1 13 HELIX 17 AB8 ASP A 406 ALA A 420 1 15 HELIX 18 AB9 GLN B 5 ASP B 13 1 9 HELIX 19 AC1 SER B 18 ASP B 31 1 14 HELIX 20 AC2 SER B 35 HIS B 49 1 15 HELIX 21 AC3 THR B 52 ASP B 65 1 14 HELIX 22 AC4 THR B 94 ALA B 104 1 11 HELIX 23 AC5 GLY B 122 GLU B 128 1 7 HELIX 24 AC6 ASP B 138 VAL B 149 1 12 HELIX 25 AC7 PRO B 162 ASP B 172 1 11 HELIX 26 AC8 SER B 179 ALA B 193 1 15 HELIX 27 AC9 THR B 213 ALA B 231 1 19 HELIX 28 AD1 ASN B 252 GLY B 265 1 14 HELIX 29 AD2 ASN B 269 GLY B 287 1 19 HELIX 30 AD3 ASP B 292 ASN B 306 1 15 HELIX 31 AD4 GLY B 307 GLN B 320 1 14 HELIX 32 AD5 ASP B 325 LEU B 334 1 10 HELIX 33 AD6 ASP B 355 MET B 366 1 12 HELIX 34 AD7 ASP B 406 ALA B 420 1 15 SHEET 1 AA1 4 VAL A 82 SER A 86 0 SHEET 2 AA1 4 ALA A 198 VAL A 205 1 O ASP A 202 N HIS A 85 SHEET 3 AA1 4 ARG A 234 ASP A 241 1 O LEU A 238 N VAL A 203 SHEET 4 AA1 4 VAL A 434 ILE A 438 -1 O TYR A 435 N LEU A 239 SHEET 1 AA2 2 VAL A 109 ILE A 112 0 SHEET 2 AA2 2 VAL A 151 ILE A 154 1 O ILE A 154 N MET A 111 SHEET 1 AA3 4 ALA A 250 GLY A 251 0 SHEET 2 AA3 4 GLY A 382 THR A 384 -1 O PHE A 383 N ALA A 250 SHEET 3 AA3 4 ALA A 400 ALA A 404 -1 O HIS A 403 N GLY A 382 SHEET 4 AA3 4 LEU A 339 VAL A 343 -1 N LEU A 339 O ALA A 404 SHEET 1 AA4 3 SER A 392 ILE A 393 0 SHEET 2 AA4 3 GLY A 349 MET A 354 -1 N GLY A 349 O ILE A 393 SHEET 3 AA4 3 ILE A 421 ASP A 424 -1 O ILE A 422 N SER A 352 SHEET 1 AA5 4 VAL B 82 SER B 86 0 SHEET 2 AA5 4 ALA B 198 VAL B 205 1 O ASP B 202 N HIS B 85 SHEET 3 AA5 4 ARG B 234 ASP B 241 1 O LEU B 238 N MET B 201 SHEET 4 AA5 4 VAL B 434 ILE B 438 -1 O TYR B 435 N LEU B 239 SHEET 1 AA6 2 VAL B 109 ILE B 112 0 SHEET 2 AA6 2 VAL B 151 ILE B 154 1 O ILE B 154 N MET B 111 SHEET 1 AA7 4 ALA B 250 GLY B 251 0 SHEET 2 AA7 4 GLY B 382 THR B 384 -1 O PHE B 383 N ALA B 250 SHEET 3 AA7 4 ALA B 400 ALA B 404 -1 O HIS B 403 N GLY B 382 SHEET 4 AA7 4 LEU B 339 VAL B 343 -1 N LEU B 339 O ALA B 404 SHEET 1 AA8 2 PHE B 350 MET B 354 0 SHEET 2 AA8 2 ILE B 421 ASP B 424 -1 O ASP B 424 N PHE B 350 SITE 1 AC1 3 HIS A 15 ASP A 138 LYS A 321 SITE 1 AC2 2 ARG A 23 ASN A 27 SITE 1 AC3 1 ARG A 115 SITE 1 AC4 5 ARG A 271 ARG A 388 HOH A 626 HOH A 741 SITE 2 AC4 5 HOH A 897 SITE 1 AC5 7 ALA A 175 THR A 176 VAL A 177 ASP A 178 SITE 2 AC5 7 HOH A 629 ARG B 9 ARG B 12 SITE 1 AC6 2 HIS A 15 ALA A 16 SITE 1 AC7 5 ASP A 292 ASP A 293 ARG A 437 HOH A 627 SITE 2 AC7 5 HOH A 808 SITE 1 AC8 4 GLN A 5 ARG A 9 HOH A 778 HOH B 622 SITE 1 AC9 8 LYS A 84 SER A 86 SER A 95 THR A 123 SITE 2 AC9 8 HOH A 682 HOH A 693 HOH A 723 HOH A 769 SITE 1 AD1 8 LYS B 84 SER B 86 SER B 95 SER B 113 SITE 2 AD1 8 THR B 123 HOH B 656 HOH B 688 HOH B 761 SITE 1 AD2 6 ARG B 271 ARG B 388 HOH B 693 HOH B 698 SITE 2 AD2 6 HOH B 833 HOH B 862 SITE 1 AD3 4 TYR B 267 PRO B 270 ARG B 388 HOH B 780 SITE 1 AD4 10 GLN A 5 ARG A 9 ARG A 12 ALA B 175 SITE 2 AD4 10 THR B 176 VAL B 177 ASP B 178 HOH B 603 SITE 3 AD4 10 HOH B 617 HOH B 827 SITE 1 AD5 5 LEU B 423 ASP B 424 ASP B 425 HOH B 705 SITE 2 AD5 5 HOH B 716 SITE 1 AD6 2 ASP B 292 ASP B 293 CRYST1 189.927 189.927 57.958 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017254 0.00000