HEADER TRANSFERASE 04-DEC-14 4X59 TITLE ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE VARIANT P180A FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH PRPP AND MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.18; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: TRPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, ANTHRANILIC ACIDS, KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS, MAGNESIUM, TRYPTOPHAN, MUTATION, KEYWDS 3 TRANSFERASE, MAGNESIUM BINDING, PHOSPHORIBOSYL PYROPHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR T.V.M.COOKSON,G.L.EVANS,E.J.PARKER,J.S.LOTT REVDAT 3 27-SEP-23 4X59 1 HETSYN REVDAT 2 29-JUL-20 4X59 1 COMPND JRNL REMARK HETNAM REVDAT 2 2 1 LINK SITE REVDAT 1 25-NOV-15 4X59 0 JRNL AUTH T.V.COOKSON,G.L.EVANS,A.CASTELL,E.N.BAKER,J.S.LOTT, JRNL AUTH 2 E.J.PARKER JRNL TITL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS ANTHRANILATE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE VARIANTS REVEAL THE CONFORMATIONAL JRNL TITL 3 CHANGES THAT FACILITATE DELIVERY OF THE SUBSTRATE TO THE JRNL TITL 4 ACTIVE SITE. JRNL REF BIOCHEMISTRY V. 54 6082 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26356348 JRNL DOI 10.1021/ACS.BIOCHEM.5B00612 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 61332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3271 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4922 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -1.10000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.69000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5130 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4894 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7009 ; 1.439 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11144 ; 0.777 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 690 ; 5.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;34.417 ;22.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 692 ;12.125 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;15.418 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 825 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5915 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1157 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8683 -47.4611 39.8180 REMARK 3 T TENSOR REMARK 3 T11: 0.0188 T22: 0.0413 REMARK 3 T33: 0.0102 T12: 0.0175 REMARK 3 T13: 0.0068 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.2791 L22: 0.9007 REMARK 3 L33: 0.2851 L12: -0.1040 REMARK 3 L13: 0.2364 L23: -0.3552 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0267 S13: -0.0398 REMARK 3 S21: -0.0639 S22: 0.0183 S23: -0.0377 REMARK 3 S31: 0.0117 S32: -0.0308 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6537 -11.8025 8.8955 REMARK 3 T TENSOR REMARK 3 T11: 0.0095 T22: 0.0441 REMARK 3 T33: 0.0234 T12: 0.0048 REMARK 3 T13: 0.0022 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0439 L22: 1.0384 REMARK 3 L33: 0.3067 L12: -0.1654 REMARK 3 L13: 0.1071 L23: -0.3063 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.0106 S13: -0.0039 REMARK 3 S21: 0.0780 S22: 0.0481 S23: -0.0533 REMARK 3 S31: -0.0227 S32: -0.0533 S33: -0.0333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4X59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 58.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.70 REMARK 200 R MERGE (I) : 0.23900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 23.60 REMARK 200 R MERGE FOR SHELL (I) : 3.74900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE MALATE, PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.61700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.16950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.61700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.16950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 510 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 ASP A 111 REMARK 465 GLY A 112 REMARK 465 VAL A 113 REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 LYS B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 24 CG1 CG2 REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 SER A 142 OG REMARK 470 LEU A 144 CG CD1 CD2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 287 CG OD1 OD2 REMARK 470 ARG A 309 CD NE CZ NH1 NH2 REMARK 470 SER A 332 OG REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 365 NE CZ NH1 NH2 REMARK 470 ILE A 370 CG1 CG2 CD1 REMARK 470 VAL B 24 CG1 CG2 REMARK 470 ARG B 58 NE CZ NH1 NH2 REMARK 470 ASN B 114 CG OD1 ND2 REMARK 470 SER B 143 OG REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 ASP B 159 CG OD1 OD2 REMARK 470 ARG B 193 CD NE CZ NH1 NH2 REMARK 470 ARG B 194 CD NE CZ NH1 NH2 REMARK 470 SER B 332 OG REMARK 470 ARG B 333 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 335 CG CD OE1 OE2 REMARK 470 ARG B 365 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 115 O1B PRP A 401 1.62 REMARK 500 O HOH B 599 O HOH B 642 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 526 O HOH B 526 2655 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 251 44.59 -91.59 REMARK 500 THR A 257 -163.87 -173.58 REMARK 500 GLN A 369 48.97 -105.81 REMARK 500 ALA B 73 103.51 96.27 REMARK 500 ALA B 140 141.69 -35.13 REMARK 500 SER B 142 18.94 -149.54 REMARK 500 ASP B 159 48.97 -105.05 REMARK 500 ASP B 251 49.52 -92.16 REMARK 500 THR B 257 -165.25 -174.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 119 OG REMARK 620 2 GLU B 252 OE1 103.6 REMARK 620 3 PRP B 401 O1A 84.2 172.1 REMARK 620 4 PRP B 401 O1A 99.4 156.8 15.3 REMARK 620 5 PRP B 401 O1B 90.1 89.4 90.1 88.0 REMARK 620 6 PRP B 401 O1B 90.1 94.6 84.8 82.8 5.3 REMARK 620 7 HOH B 627 O 81.6 86.8 94.9 99.1 169.8 171.6 REMARK 620 8 HOH B 628 O 171.4 84.1 88.1 73.1 93.9 93.2 95.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 251 OD1 REMARK 620 2 GLU B 252 OE1 94.5 REMARK 620 3 HOH B 628 O 87.4 81.6 REMARK 620 4 HOH B 629 O 173.1 92.2 94.7 REMARK 620 5 HOH B 630 O 86.1 173.7 92.1 87.3 REMARK 620 6 HOH B 631 O 83.9 104.0 169.9 93.3 82.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X58 RELATED DB: PDB REMARK 900 RELATED ID: 4X5A RELATED DB: PDB REMARK 900 RELATED ID: 4X5B RELATED DB: PDB REMARK 900 RELATED ID: 4X5C RELATED DB: PDB REMARK 900 RELATED ID: 4X5D RELATED DB: PDB REMARK 900 RELATED ID: 4X5E RELATED DB: PDB DBREF 4X59 A 1 370 UNP A5U4M0 TRPD_MYCTA 1 370 DBREF 4X59 B 1 370 UNP A5U4M0 TRPD_MYCTA 1 370 SEQADV 4X59 ALA A 180 UNP A5U4M0 PRO 180 ENGINEERED MUTATION SEQADV 4X59 LEU A 371 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 GLU A 372 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS A 373 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS A 374 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS A 375 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS A 376 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS A 377 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS A 378 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 ALA B 180 UNP A5U4M0 PRO 180 ENGINEERED MUTATION SEQADV 4X59 LEU B 371 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 GLU B 372 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS B 373 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS B 374 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS B 375 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS B 376 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS B 377 UNP A5U4M0 EXPRESSION TAG SEQADV 4X59 HIS B 378 UNP A5U4M0 EXPRESSION TAG SEQRES 1 A 378 MET ALA LEU SER ALA GLU GLY SER SER GLY GLY SER ARG SEQRES 2 A 378 GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SER SEQRES 3 A 378 TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG ASP SEQRES 4 A 378 LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN ILE SEQRES 5 A 378 MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA PHE SEQRES 6 A 378 ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP GLU SEQRES 7 A 378 VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA HIS SEQRES 8 A 378 PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL ASP SEQRES 9 A 378 VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL ASN SEQRES 10 A 378 LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA GLY SEQRES 11 A 378 VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SER SEQRES 12 A 378 LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY VAL SEQRES 13 A 378 ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER LEU SEQRES 14 A 378 ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA ALA ARG PHE SEQRES 15 A 378 HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG GLU SEQRES 16 A 378 ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO LEU SEQRES 17 A 378 THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY CYS SEQRES 18 A 378 ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL PHE SEQRES 19 A 378 ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY ASP SEQRES 20 A 378 ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER THR SEQRES 21 A 378 ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU THR SEQRES 22 A 378 PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN LEU SEQRES 23 A 378 ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA ALA SEQRES 24 A 378 ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO VAL SEQRES 25 A 378 ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE VAL SEQRES 26 A 378 ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU PRO SEQRES 27 A 378 ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA ILE SEQRES 28 A 378 ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP VAL SEQRES 29 A 378 ARG PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS HIS SEQRES 30 A 378 HIS SEQRES 1 B 378 MET ALA LEU SER ALA GLU GLY SER SER GLY GLY SER ARG SEQRES 2 B 378 GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SER SEQRES 3 B 378 TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG ASP SEQRES 4 B 378 LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN ILE SEQRES 5 B 378 MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA PHE SEQRES 6 B 378 ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP GLU SEQRES 7 B 378 VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA HIS SEQRES 8 B 378 PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL ASP SEQRES 9 B 378 VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL ASN SEQRES 10 B 378 LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA GLY SEQRES 11 B 378 VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SER SEQRES 12 B 378 LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY VAL SEQRES 13 B 378 ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER LEU SEQRES 14 B 378 ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA ALA ARG PHE SEQRES 15 B 378 HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ARG ARG GLU SEQRES 16 B 378 ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO LEU SEQRES 17 B 378 THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY CYS SEQRES 18 B 378 ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL PHE SEQRES 19 B 378 ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY ASP SEQRES 20 B 378 ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER THR SEQRES 21 B 378 ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU THR SEQRES 22 B 378 PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN LEU SEQRES 23 B 378 ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA ALA SEQRES 24 B 378 ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO VAL SEQRES 25 B 378 ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE VAL SEQRES 26 B 378 ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU PRO SEQRES 27 B 378 ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA ILE SEQRES 28 B 378 ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP VAL SEQRES 29 B 378 ARG PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS HIS SEQRES 30 B 378 HIS HET PRP A 401 22 HET GOL A 402 6 HET GOL A 403 6 HET PRP B 401 44 HET MG B 402 1 HET MG B 403 1 HET IMD B 404 5 HET IMD B 405 5 HET GOL B 406 6 HET GOL B 407 6 HET GOL B 408 6 HET GOL B 409 6 HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM IMD IMIDAZOLE HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PRP 2(C5 H13 O14 P3) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 7 MG 2(MG 2+) FORMUL 9 IMD 2(C3 H5 N2 1+) FORMUL 15 HOH *236(H2 O) HELIX 1 AA1 SER A 26 ASP A 36 1 11 HELIX 2 AA2 GLY A 43 THR A 54 1 12 HELIX 3 AA3 ARG A 58 LYS A 72 1 15 HELIX 4 AA4 THR A 75 ALA A 90 1 16 HELIX 5 AA5 THR A 115 ALA A 129 1 15 HELIX 6 AA6 GLY A 146 LEU A 154 1 9 HELIX 7 AA7 GLY A 161 GLY A 173 1 13 HELIX 8 AA8 ALA A 179 HIS A 183 1 5 HELIX 9 AA9 TYR A 186 GLY A 197 1 12 HELIX 10 AB1 THR A 200 THR A 209 5 10 HELIX 11 AB2 LEU A 226 ARG A 237 1 12 HELIX 12 AB3 ASP A 275 GLY A 280 5 6 HELIX 13 AB4 GLN A 285 LEU A 289 5 5 HELIX 14 AB5 ASP A 293 GLY A 306 1 14 HELIX 15 AB6 GLY A 310 GLY A 329 1 20 HELIX 16 AB7 GLU A 335 THR A 353 1 19 HELIX 17 AB8 GLY A 354 GLN A 369 1 16 HELIX 18 AB9 SER B 26 ASP B 36 1 11 HELIX 19 AC1 GLY B 43 THR B 54 1 12 HELIX 20 AC2 ARG B 58 ALA B 73 1 16 HELIX 21 AC3 THR B 75 ALA B 90 1 16 HELIX 22 AC4 ASN B 117 ALA B 129 1 13 HELIX 23 AC5 GLY B 146 LEU B 154 1 9 HELIX 24 AC6 GLY B 161 GLY B 173 1 13 HELIX 25 AC7 ALA B 179 HIS B 183 1 5 HELIX 26 AC8 TYR B 186 GLY B 197 1 12 HELIX 27 AC9 THR B 200 ASN B 203 5 4 HELIX 28 AD1 LEU B 204 THR B 209 1 6 HELIX 29 AD2 LEU B 226 ARG B 237 1 12 HELIX 30 AD3 ASP B 275 GLY B 280 5 6 HELIX 31 AD4 GLN B 285 ALA B 290 5 6 HELIX 32 AD5 ASP B 293 GLY B 306 1 14 HELIX 33 AD6 GLY B 310 GLY B 329 1 20 HELIX 34 AD7 GLU B 335 THR B 353 1 19 HELIX 35 AD8 GLY B 354 GLN B 369 1 16 SHEET 1 AA1 5 VAL A 103 GLY A 107 0 SHEET 2 AA1 5 ALA A 216 GLY A 220 1 O GLY A 220 N VAL A 106 SHEET 3 AA1 5 SER A 240 GLY A 246 1 O LEU A 242 N ILE A 219 SHEET 4 AA1 5 SER A 259 ALA A 265 -1 O TRP A 262 N VAL A 243 SHEET 5 AA1 5 SER A 268 PHE A 274 -1 O PHE A 274 N SER A 259 SHEET 1 AA2 2 VAL A 133 GLY A 137 0 SHEET 2 AA2 2 ILE A 174 PHE A 178 1 O CYS A 177 N LYS A 135 SHEET 1 AA3 5 VAL B 103 GLY B 107 0 SHEET 2 AA3 5 ALA B 216 GLY B 220 1 O GLY B 220 N VAL B 106 SHEET 3 AA3 5 SER B 240 GLY B 246 1 O LEU B 242 N ILE B 219 SHEET 4 AA3 5 SER B 259 ALA B 265 -1 O THR B 260 N HIS B 245 SHEET 5 AA3 5 SER B 268 PHE B 274 -1 O PHE B 274 N SER B 259 SHEET 1 AA4 2 VAL B 133 GLY B 137 0 SHEET 2 AA4 2 ILE B 174 PHE B 178 1 O CYS B 177 N LYS B 135 LINK OG SER B 119 MG MG B 402 1555 1555 2.16 LINK OD1 ASP B 251 MG MG B 403 1555 1555 2.22 LINK OE1 GLU B 252 MG MG B 402 1555 1555 2.12 LINK OE1 GLU B 252 MG MG B 403 1555 1555 2.20 LINK O1AAPRP B 401 MG MG B 402 1555 1555 2.03 LINK O1ABPRP B 401 MG MG B 402 1555 1555 2.38 LINK O1BAPRP B 401 MG MG B 402 1555 1555 2.00 LINK O1BBPRP B 401 MG MG B 402 1555 1555 2.01 LINK MG MG B 402 O HOH B 627 1555 1555 2.10 LINK MG MG B 402 O HOH B 628 1555 1555 2.24 LINK MG MG B 403 O HOH B 628 1555 1555 2.26 LINK MG MG B 403 O HOH B 629 1555 1555 2.06 LINK MG MG B 403 O HOH B 630 1555 1555 2.15 LINK MG MG B 403 O HOH B 631 1555 1555 2.28 CRYST1 95.234 78.339 102.155 90.00 111.74 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010500 0.000000 0.004187 0.00000 SCALE2 0.000000 0.012765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010539 0.00000