HEADER TRANSFERASE 05-DEC-14 4X5D TITLE ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE VARIANT R193A FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS WITH ANTHRANILATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: TRPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, ANTHRANILIC ACIDS, KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS, MAGNESIUM, TRYPTOPHAN, MUTATION, KEYWDS 3 TRANSFERASE, MAGNESIUM BINDING, PHOSPHORIBOSYL PYROPHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR T.V.M.COOKSON,E.J.PARKER,J.S.LOTT REVDAT 5 15-NOV-23 4X5D 1 ATOM REVDAT 4 27-SEP-23 4X5D 1 JRNL REMARK REVDAT 3 14-OCT-15 4X5D 1 JRNL REVDAT 2 07-OCT-15 4X5D 1 JRNL REVDAT 1 23-SEP-15 4X5D 0 JRNL AUTH T.V.COOKSON,G.L.EVANS,A.CASTELL,E.N.BAKER,J.S.LOTT, JRNL AUTH 2 E.J.PARKER JRNL TITL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS ANTHRANILATE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE VARIANTS REVEAL THE CONFORMATIONAL JRNL TITL 3 CHANGES THAT FACILITATE DELIVERY OF THE SUBSTRATE TO THE JRNL TITL 4 ACTIVE SITE. JRNL REF BIOCHEMISTRY V. 54 6082 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26356348 JRNL DOI 10.1021/ACS.BIOCHEM.5B00612 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2755 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.54000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : 0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.613 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5108 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4939 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6972 ; 1.348 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11230 ; 0.772 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 692 ; 5.939 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;33.596 ;22.563 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 708 ;13.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;18.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 814 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5982 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1189 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9888 24.0324 -51.6493 REMARK 3 T TENSOR REMARK 3 T11: 0.0220 T22: 0.0436 REMARK 3 T33: 0.0306 T12: 0.0105 REMARK 3 T13: 0.0235 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.6702 L22: 0.0746 REMARK 3 L33: 0.5297 L12: 0.1798 REMARK 3 L13: -0.3707 L23: -0.0125 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.0474 S13: -0.0171 REMARK 3 S21: 0.0015 S22: -0.0180 S23: -0.0042 REMARK 3 S31: 0.0746 S32: 0.0101 S33: 0.0468 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6552 21.1053 -8.7484 REMARK 3 T TENSOR REMARK 3 T11: 0.0248 T22: 0.0682 REMARK 3 T33: 0.0041 T12: -0.0076 REMARK 3 T13: 0.0041 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.3821 L22: 0.2010 REMARK 3 L33: 0.4470 L12: 0.0823 REMARK 3 L13: -0.3150 L23: -0.1280 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: 0.0660 S13: -0.0141 REMARK 3 S21: 0.0178 S22: 0.0273 S23: -0.0122 REMARK 3 S31: -0.0344 S32: -0.0615 S33: 0.0064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4X5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 120.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE MALATE, PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.97500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.41600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.82300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.41600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.97500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.82300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT IS THE SAME AS BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 SER A 143 REMARK 465 LEU A 144 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 LYS B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 VAL B 24 REMARK 465 ASP B 111 REMARK 465 GLY B 112 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 142 OG REMARK 470 SER A 145 OG REMARK 470 LEU A 250 CG CD1 CD2 REMARK 470 SER A 332 OG REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 SER B 142 OG REMARK 470 SER B 145 OG REMARK 470 ASP B 163 CG OD1 OD2 REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 333 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 369 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 215 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 73 103.30 89.89 REMARK 500 ASP A 251 40.61 -89.28 REMARK 500 THR A 257 -158.89 -156.23 REMARK 500 ALA B 73 107.77 94.43 REMARK 500 SER B 145 152.05 79.25 REMARK 500 ASP B 251 45.62 -87.99 REMARK 500 THR B 257 -164.24 -172.04 REMARK 500 SER B 331 23.49 -142.53 REMARK 500 GLN B 369 26.22 -79.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BE2 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BE2 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X58 RELATED DB: PDB REMARK 900 RELATED ID: 4X59 RELATED DB: PDB REMARK 900 RELATED ID: 4X5A RELATED DB: PDB REMARK 900 RELATED ID: 4X5B RELATED DB: PDB REMARK 900 RELATED ID: 4X5C RELATED DB: PDB REMARK 900 RELATED ID: 4X5E RELATED DB: PDB DBREF 4X5D A 1 370 UNP A5U4M0 TRPD_MYCTA 1 370 DBREF 4X5D B 1 370 UNP A5U4M0 TRPD_MYCTA 1 370 SEQADV 4X5D ALA A 193 UNP A5U4M0 ARG 193 ENGINEERED MUTATION SEQADV 4X5D LEU A 371 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D GLU A 372 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS A 373 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS A 374 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS A 375 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS A 376 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS A 377 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS A 378 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D ALA B 193 UNP A5U4M0 ARG 193 ENGINEERED MUTATION SEQADV 4X5D LEU B 371 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D GLU B 372 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS B 373 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS B 374 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS B 375 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS B 376 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS B 377 UNP A5U4M0 EXPRESSION TAG SEQADV 4X5D HIS B 378 UNP A5U4M0 EXPRESSION TAG SEQRES 1 A 378 MET ALA LEU SER ALA GLU GLY SER SER GLY GLY SER ARG SEQRES 2 A 378 GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SER SEQRES 3 A 378 TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG ASP SEQRES 4 A 378 LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN ILE SEQRES 5 A 378 MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA PHE SEQRES 6 A 378 ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP GLU SEQRES 7 A 378 VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA HIS SEQRES 8 A 378 PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL ASP SEQRES 9 A 378 VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL ASN SEQRES 10 A 378 LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA GLY SEQRES 11 A 378 VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SER SEQRES 12 A 378 LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY VAL SEQRES 13 A 378 ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER LEU SEQRES 14 A 378 ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG PHE SEQRES 15 A 378 HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ALA ARG GLU SEQRES 16 A 378 ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO LEU SEQRES 17 A 378 THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY CYS SEQRES 18 A 378 ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL PHE SEQRES 19 A 378 ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY ASP SEQRES 20 A 378 ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER THR SEQRES 21 A 378 ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU THR SEQRES 22 A 378 PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN LEU SEQRES 23 A 378 ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA ALA SEQRES 24 A 378 ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO VAL SEQRES 25 A 378 ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE VAL SEQRES 26 A 378 ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU PRO SEQRES 27 A 378 ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA ILE SEQRES 28 A 378 ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP VAL SEQRES 29 A 378 ARG PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS HIS SEQRES 30 A 378 HIS SEQRES 1 B 378 MET ALA LEU SER ALA GLU GLY SER SER GLY GLY SER ARG SEQRES 2 B 378 GLY GLY SER PRO LYS ALA GLU ALA ALA SER VAL PRO SER SEQRES 3 B 378 TRP PRO GLN ILE LEU GLY ARG LEU THR ASP ASN ARG ASP SEQRES 4 B 378 LEU ALA ARG GLY GLN ALA ALA TRP ALA MET ASP GLN ILE SEQRES 5 B 378 MET THR GLY ASN ALA ARG PRO ALA GLN ILE ALA ALA PHE SEQRES 6 B 378 ALA VAL ALA MET THR MET LYS ALA PRO THR ALA ASP GLU SEQRES 7 B 378 VAL GLY GLU LEU ALA GLY VAL MET LEU SER HIS ALA HIS SEQRES 8 B 378 PRO LEU PRO ALA ASP THR VAL PRO ASP ASP ALA VAL ASP SEQRES 9 B 378 VAL VAL GLY THR GLY GLY ASP GLY VAL ASN THR VAL ASN SEQRES 10 B 378 LEU SER THR MET ALA ALA ILE VAL VAL ALA ALA ALA GLY SEQRES 11 B 378 VAL PRO VAL VAL LYS HIS GLY ASN ARG ALA ALA SER SER SEQRES 12 B 378 LEU SER GLY GLY ALA ASP THR LEU GLU ALA LEU GLY VAL SEQRES 13 B 378 ARG ILE ASP LEU GLY PRO ASP LEU VAL ALA ARG SER LEU SEQRES 14 B 378 ALA GLU VAL GLY ILE GLY PHE CYS PHE ALA PRO ARG PHE SEQRES 15 B 378 HIS PRO SER TYR ARG HIS ALA ALA ALA VAL ALA ARG GLU SEQRES 16 B 378 ILE GLY VAL PRO THR VAL PHE ASN LEU LEU GLY PRO LEU SEQRES 17 B 378 THR ASN PRO ALA ARG PRO ARG ALA GLY LEU ILE GLY CYS SEQRES 18 B 378 ALA PHE ALA ASP LEU ALA GLU VAL MET ALA GLY VAL PHE SEQRES 19 B 378 ALA ALA ARG ARG SER SER VAL LEU VAL VAL HIS GLY ASP SEQRES 20 B 378 ASP GLY LEU ASP GLU LEU THR THR THR THR THR SER THR SEQRES 21 B 378 ILE TRP ARG VAL ALA ALA GLY SER VAL ASP LYS LEU THR SEQRES 22 B 378 PHE ASP PRO ALA GLY PHE GLY PHE ALA ARG ALA GLN LEU SEQRES 23 B 378 ASP GLN LEU ALA GLY GLY ASP ALA GLN ALA ASN ALA ALA SEQRES 24 B 378 ALA VAL ARG ALA VAL LEU GLY GLY ALA ARG GLY PRO VAL SEQRES 25 B 378 ARG ASP ALA VAL VAL LEU ASN ALA ALA GLY ALA ILE VAL SEQRES 26 B 378 ALA HIS ALA GLY LEU SER SER ARG ALA GLU TRP LEU PRO SEQRES 27 B 378 ALA TRP GLU GLU GLY LEU ARG ARG ALA SER ALA ALA ILE SEQRES 28 B 378 ASP THR GLY ALA ALA GLU GLN LEU LEU ALA ARG TRP VAL SEQRES 29 B 378 ARG PHE GLY ARG GLN ILE LEU GLU HIS HIS HIS HIS HIS SEQRES 30 B 378 HIS HET BE2 A 401 10 HET IMD A 402 5 HET GOL A 403 6 HET BE2 B 401 10 HET GOL B 402 6 HETNAM BE2 2-AMINOBENZOIC ACID HETNAM IMD IMIDAZOLE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BE2 2(C7 H7 N O2) FORMUL 4 IMD C3 H5 N2 1+ FORMUL 5 GOL 2(C3 H8 O3) FORMUL 8 HOH *235(H2 O) HELIX 1 AA1 SER A 26 ASP A 36 1 11 HELIX 2 AA2 GLY A 43 THR A 54 1 12 HELIX 3 AA3 ARG A 58 ALA A 73 1 16 HELIX 4 AA4 THR A 75 ALA A 90 1 16 HELIX 5 AA5 THR A 115 ALA A 129 1 15 HELIX 6 AA6 GLY A 147 LEU A 154 1 8 HELIX 7 AA7 GLY A 161 GLY A 173 1 13 HELIX 8 AA8 ALA A 179 HIS A 183 1 5 HELIX 9 AA9 TYR A 186 GLY A 197 1 12 HELIX 10 AB1 THR A 200 ASN A 203 5 4 HELIX 11 AB2 LEU A 204 THR A 209 1 6 HELIX 12 AB3 PHE A 223 ARG A 237 1 15 HELIX 13 AB4 ASP A 275 GLY A 280 5 6 HELIX 14 AB5 GLN A 285 ALA A 290 1 6 HELIX 15 AB6 ASP A 293 GLY A 307 1 15 HELIX 16 AB7 GLY A 310 GLY A 329 1 20 HELIX 17 AB8 GLU A 335 THR A 353 1 19 HELIX 18 AB9 GLY A 354 GLN A 369 1 16 HELIX 19 AC1 SER B 26 ASP B 36 1 11 HELIX 20 AC2 GLY B 43 THR B 54 1 12 HELIX 21 AC3 ARG B 58 ALA B 73 1 16 HELIX 22 AC4 THR B 75 HIS B 89 1 15 HELIX 23 AC5 THR B 115 ALA B 129 1 15 HELIX 24 AC6 GLY B 147 LEU B 154 1 8 HELIX 25 AC7 GLY B 161 GLY B 173 1 13 HELIX 26 AC8 ALA B 179 HIS B 183 1 5 HELIX 27 AC9 TYR B 186 GLY B 197 1 12 HELIX 28 AD1 THR B 200 ASN B 203 5 4 HELIX 29 AD2 LEU B 204 THR B 209 1 6 HELIX 30 AD3 PHE B 223 ALA B 236 1 14 HELIX 31 AD4 ASP B 275 GLY B 280 5 6 HELIX 32 AD5 GLN B 285 LEU B 289 5 5 HELIX 33 AD6 ASP B 293 GLY B 307 1 15 HELIX 34 AD7 GLY B 310 GLY B 329 1 20 HELIX 35 AD8 GLU B 335 THR B 353 1 19 HELIX 36 AD9 GLY B 354 GLN B 369 1 16 SHEET 1 AA1 5 VAL A 103 GLY A 107 0 SHEET 2 AA1 5 ALA A 216 GLY A 220 1 O GLY A 220 N VAL A 106 SHEET 3 AA1 5 SER A 240 GLY A 246 1 O VAL A 244 N ILE A 219 SHEET 4 AA1 5 SER A 259 ALA A 265 -1 O THR A 260 N HIS A 245 SHEET 5 AA1 5 SER A 268 PHE A 274 -1 O ASP A 270 N ARG A 263 SHEET 1 AA2 2 VAL A 133 GLY A 137 0 SHEET 2 AA2 2 ILE A 174 PHE A 178 1 O CYS A 177 N LYS A 135 SHEET 1 AA3 5 VAL B 103 GLY B 107 0 SHEET 2 AA3 5 ALA B 216 GLY B 220 1 O GLY B 220 N VAL B 106 SHEET 3 AA3 5 SER B 240 GLY B 246 1 O LEU B 242 N ILE B 219 SHEET 4 AA3 5 SER B 259 ALA B 265 -1 O THR B 260 N HIS B 245 SHEET 5 AA3 5 SER B 268 PHE B 274 -1 O PHE B 274 N SER B 259 SHEET 1 AA4 2 VAL B 133 GLY B 137 0 SHEET 2 AA4 2 ILE B 174 PHE B 178 1 O CYS B 177 N LYS B 135 CISPEP 1 ALA B 140 ALA B 141 0 -6.20 SITE 1 AC1 8 ASN A 138 ALA A 179 PRO A 180 HIS A 183 SITE 2 AC1 8 TYR A 186 ALA A 190 ARG A 194 HOH A 591 SITE 1 AC2 5 LEU A 305 GLY A 306 ILE A 351 ASP A 352 SITE 2 AC2 5 GLU A 357 SITE 1 AC3 5 THR A 273 PHE A 274 ASP A 275 GLY A 278 SITE 2 AC3 5 TRP A 336 SITE 1 AC4 7 ASN B 138 HIS B 183 TYR B 186 ARG B 187 SITE 2 AC4 7 ALA B 190 ARG B 194 HOH B 553 SITE 1 AC5 6 PHE B 274 ASP B 275 PHE B 279 TRP B 336 SITE 2 AC5 6 HOH B 509 HOH B 520 CRYST1 79.950 91.646 120.832 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008276 0.00000