HEADER SUGAR BINDING PROTEIN 05-DEC-14 4X5R TITLE CRYSTAL STRUCTURE OF FIMH IN COMPLEX WITH A SQUARYL-PHENYL ALPHA-D- TITLE 2 MANNOPYRANOSIDE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FIMH; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 22-180; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: FIMH, B4320, JW4283; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PTRC99 KEYWDS SUGAR BINDING PROTEIN, BACTERIAL ADHESIN, PILUS, UPEC, ANTAGONIST KEYWDS 2 COMPLEX, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR R.C.PRESTON,R.P.JAKOB,B.FIEGE,P.ZIHLMANN,S.RABBANI,O.SCHWARDT, AUTHOR 2 X.JIANG,B.ERNST,T.MAIER REVDAT 4 16-OCT-24 4X5R 1 REMARK REVDAT 3 10-JAN-24 4X5R 1 REMARK REVDAT 2 27-MAY-15 4X5R 1 JRNL REVDAT 1 20-MAY-15 4X5R 0 JRNL AUTH B.FIEGE,S.RABBANI,R.C.PRESTON,R.P.JAKOB,P.ZIHLMANN, JRNL AUTH 2 O.SCHWARDT,X.JIANG,T.MAIER,B.ERNST JRNL TITL THE TYROSINE GATE OF THE BACTERIAL LECTIN FIMH: A JRNL TITL 2 CONFORMATIONAL ANALYSIS BY NMR SPECTROSCOPY AND X-RAY JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF CHEMBIOCHEM V. 16 1235 2015 JRNL REFN ESSN 1439-7633 JRNL PMID 25940742 JRNL DOI 10.1002/CBIC.201402714 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1779) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 57594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0503 - 4.5491 1.00 3017 159 0.1482 0.1733 REMARK 3 2 4.5491 - 3.6119 0.93 2664 140 0.1434 0.1558 REMARK 3 3 3.6119 - 3.1556 1.00 2833 149 0.1409 0.1723 REMARK 3 4 3.1556 - 2.8672 1.00 2836 149 0.1420 0.1711 REMARK 3 5 2.8672 - 2.6618 1.00 2801 147 0.1518 0.1971 REMARK 3 6 2.6618 - 2.5049 1.00 2796 148 0.1514 0.1939 REMARK 3 7 2.5049 - 2.3795 1.00 2793 147 0.1489 0.1839 REMARK 3 8 2.3795 - 2.2759 0.96 2694 141 0.1659 0.2193 REMARK 3 9 2.2759 - 2.1883 0.55 1520 80 0.2191 0.2804 REMARK 3 10 2.1883 - 2.1128 1.00 2772 146 0.1595 0.2039 REMARK 3 11 2.1128 - 2.0467 1.00 2755 145 0.1595 0.2314 REMARK 3 12 2.0467 - 1.9882 1.00 2775 146 0.1701 0.2306 REMARK 3 13 1.9882 - 1.9359 0.93 2572 136 0.2180 0.2594 REMARK 3 14 1.9359 - 1.8887 0.22 606 32 0.4337 0.5223 REMARK 3 15 1.8887 - 1.8457 1.00 2759 145 0.1852 0.2319 REMARK 3 16 1.8457 - 1.8065 1.00 2776 146 0.1807 0.2344 REMARK 3 17 1.8065 - 1.7703 1.00 2757 145 0.1884 0.2522 REMARK 3 18 1.7703 - 1.7369 1.00 2753 145 0.1934 0.2531 REMARK 3 19 1.7369 - 1.7059 1.00 2762 145 0.2111 0.2538 REMARK 3 20 1.7059 - 1.6770 1.00 2730 144 0.2424 0.2780 REMARK 3 21 1.6770 - 1.6499 0.99 2743 145 0.2725 0.3511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3876 REMARK 3 ANGLE : 1.318 5351 REMARK 3 CHIRALITY : 0.053 619 REMARK 3 PLANARITY : 0.006 724 REMARK 3 DIHEDRAL : 11.231 1385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57603 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 42.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.97100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M HEPES PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.64500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.93000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.93000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.64500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 159 REMARK 465 LEU A 160 REMARK 465 GLY B 159 REMARK 465 LEU B 160 REMARK 465 GLY C 159 REMARK 465 LEU C 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN B 23 O HOH B 664 1.07 REMARK 500 HH TYR C 21 O HOH C 401 1.37 REMARK 500 HH12 ARG A 98 O HOH A 688 1.56 REMARK 500 H GLY C 31 O HOH C 610 1.58 REMARK 500 HE21 GLN A 32 O HOH A 404 1.58 REMARK 500 HH TYR C 55 O HOH C 585 1.60 REMARK 500 ND2 ASN B 23 O HOH B 664 1.81 REMARK 500 O HOH C 443 O HOH C 473 1.82 REMARK 500 O HOH B 699 O HOH B 717 1.84 REMARK 500 O HOH A 668 O HOH A 669 1.85 REMARK 500 O HOH B 684 O HOH B 720 1.85 REMARK 500 O HOH C 485 O HOH C 487 1.90 REMARK 500 O HOH A 587 O HOH A 695 1.92 REMARK 500 O HOH B 578 O HOH B 685 1.92 REMARK 500 O HOH B 413 O HOH B 448 1.94 REMARK 500 O HOH B 423 O HOH B 706 1.96 REMARK 500 O HOH C 566 O HOH C 666 1.97 REMARK 500 O HOH B 695 O HOH B 705 1.98 REMARK 500 O HOH B 595 O HOH B 680 1.98 REMARK 500 O HOH B 701 O HOH B 705 1.99 REMARK 500 O HOH A 647 O HOH A 672 2.00 REMARK 500 O HOH A 454 O HOH A 455 2.03 REMARK 500 O HOH A 648 O HOH A 656 2.07 REMARK 500 O HOH A 587 O HOH A 636 2.08 REMARK 500 OD1 ASP A 100 O HOH A 650 2.10 REMARK 500 O HOH A 596 O HOH A 656 2.10 REMARK 500 O HOH B 617 O HOH B 679 2.13 REMARK 500 O HOH A 572 O HOH A 645 2.13 REMARK 500 OH TYR C 21 O HOH C 401 2.14 REMARK 500 O HOH B 605 O HOH B 609 2.14 REMARK 500 O HOH C 520 O HOH C 636 2.15 REMARK 500 O HOH A 665 O HOH A 708 2.15 REMARK 500 O HOH A 589 O HOH A 672 2.17 REMARK 500 O HOH C 488 O HOH C 493 2.17 REMARK 500 O HOH C 421 O HOH C 462 2.17 REMARK 500 OE2 GLU A 89 O HOH A 401 2.17 REMARK 500 NE ARG C 92 O HOH C 586 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 469 O HOH C 427 3554 1.92 REMARK 500 O HOH B 463 O HOH C 420 1655 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 48 54.52 -155.59 REMARK 500 VAL A 112 -65.02 -94.60 REMARK 500 TYR B 48 55.10 -152.86 REMARK 500 ASN B 96 30.43 -141.65 REMARK 500 TYR B 137 -57.03 -128.24 REMARK 500 TYR C 48 57.88 -151.51 REMARK 500 ASN C 96 28.81 -140.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 644 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 697 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 713 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 647 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 662 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 677 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B 683 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B 714 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH C 647 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH C 653 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH C 665 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH C 669 DISTANCE = 6.54 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3XO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3XO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3XO C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CSS RELATED DB: PDB REMARK 900 4CSS CONTAINS THE SAME PROTEIN WITH A DIFFERENT ANTAGONIST. REMARK 900 RELATED ID: 4CST RELATED DB: PDB REMARK 900 4CST CONTAINS THE SAME PROTEIN WITH A DIFFERENT ANTAGONIST. DBREF 4X5R A 1 159 UNP P08191 FIMH_ECOLI 22 180 DBREF 4X5R B 1 159 UNP P08191 FIMH_ECOLI 22 180 DBREF 4X5R C 1 159 UNP P08191 FIMH_ECOLI 22 180 SEQADV 4X5R LEU A 160 UNP P08191 EXPRESSION TAG SEQADV 4X5R LEU B 160 UNP P08191 EXPRESSION TAG SEQADV 4X5R LEU C 160 UNP P08191 EXPRESSION TAG SEQRES 1 A 160 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 A 160 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 A 160 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 A 160 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 A 160 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 A 160 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 A 160 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 A 160 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 A 160 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 A 160 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 A 160 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 A 160 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 A 160 PRO THR GLY LEU SEQRES 1 B 160 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 B 160 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 B 160 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 B 160 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 B 160 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 B 160 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 B 160 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 B 160 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 B 160 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 B 160 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 B 160 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 B 160 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 B 160 PRO THR GLY LEU SEQRES 1 C 160 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 C 160 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 C 160 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 C 160 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 C 160 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 C 160 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 C 160 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 C 160 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 C 160 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 C 160 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 C 160 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 C 160 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 C 160 PRO THR GLY LEU HET 3XO A 301 59 HET SO4 A 302 5 HET 3XO B 301 59 HET 3XO C 301 59 HETNAM 3XO 2-CHLORO-4-{[2-(4-METHYLPIPERAZIN-1-YL)-3,4- HETNAM 2 3XO DIOXOCYCLOBUT-1-EN-1-YL]AMINO}PHENYL ALPHA-D- HETNAM 3 3XO MANNOPYRANOSIDE HETNAM SO4 SULFATE ION FORMUL 4 3XO 3(C21 H26 CL N3 O8) FORMUL 5 SO4 O4 S 2- FORMUL 8 HOH *915(H2 O) HELIX 1 AA1 TYR A 64 ASN A 70 1 7 HELIX 2 AA2 TYR B 64 ASN B 70 1 7 HELIX 3 AA3 TYR C 64 ASN C 70 1 7 SHEET 1 AA1 4 ALA A 10 ILE A 11 0 SHEET 2 AA1 4 ALA A 2 THR A 5 -1 N CYS A 3 O ILE A 11 SHEET 3 AA1 4 ILE A 42 HIS A 45 -1 O PHE A 43 N LYS A 4 SHEET 4 AA1 4 LYS A 101 PRO A 102 -1 O LYS A 101 N CYS A 44 SHEET 1 AA2 5 GLY A 16 VAL A 22 0 SHEET 2 AA2 5 PHE A 142 ALA A 150 1 O TYR A 149 N VAL A 20 SHEET 3 AA2 5 LEU A 125 ASN A 135 -1 N ALA A 127 O ILE A 148 SHEET 4 AA2 5 ASP A 54 ALA A 63 -1 N ARG A 60 O ILE A 130 SHEET 5 AA2 5 VAL A 93 TYR A 95 -1 O VAL A 93 N VAL A 56 SHEET 1 AA3 4 LEU A 34 ASP A 37 0 SHEET 2 AA3 4 VAL A 105 PRO A 111 -1 O LEU A 109 N LEU A 34 SHEET 3 AA3 4 PHE A 71 TYR A 77 -1 N SER A 72 O THR A 110 SHEET 4 AA3 4 SER A 80 PHE A 84 -1 O SER A 80 N TYR A 77 SHEET 1 AA4 2 VAL A 118 ILE A 120 0 SHEET 2 AA4 2 VAL A 154 VAL A 155 -1 O VAL A 154 N ALA A 119 SHEET 1 AA5 4 ALA B 10 ILE B 11 0 SHEET 2 AA5 4 ALA B 2 THR B 5 -1 N CYS B 3 O ILE B 11 SHEET 3 AA5 4 ILE B 42 HIS B 45 -1 O PHE B 43 N LYS B 4 SHEET 4 AA5 4 LYS B 101 PRO B 102 -1 O LYS B 101 N CYS B 44 SHEET 1 AA6 5 GLY B 16 VAL B 22 0 SHEET 2 AA6 5 PHE B 142 ALA B 150 1 O TYR B 149 N VAL B 20 SHEET 3 AA6 5 LEU B 125 ASN B 135 -1 N LEU B 131 O PHE B 144 SHEET 4 AA6 5 ASP B 54 ALA B 63 -1 N ARG B 60 O ILE B 130 SHEET 5 AA6 5 VAL B 93 TYR B 95 -1 O TYR B 95 N ASP B 54 SHEET 1 AA7 4 LEU B 34 ASP B 37 0 SHEET 2 AA7 4 VAL B 105 PRO B 111 -1 O LEU B 109 N LEU B 34 SHEET 3 AA7 4 PHE B 71 TYR B 77 -1 N LYS B 76 O ALA B 106 SHEET 4 AA7 4 SER B 80 PHE B 84 -1 O SER B 80 N TYR B 77 SHEET 1 AA8 2 GLY B 117 ILE B 120 0 SHEET 2 AA8 2 VAL B 154 VAL B 156 -1 O VAL B 154 N ALA B 119 SHEET 1 AA9 4 ALA C 10 ILE C 11 0 SHEET 2 AA9 4 ALA C 2 THR C 5 -1 N CYS C 3 O ILE C 11 SHEET 3 AA9 4 ILE C 42 HIS C 45 -1 O PHE C 43 N LYS C 4 SHEET 4 AA9 4 LYS C 101 PRO C 102 -1 O LYS C 101 N CYS C 44 SHEET 1 AB1 5 GLY C 16 VAL C 22 0 SHEET 2 AB1 5 PHE C 142 ALA C 150 1 O TYR C 149 N VAL C 20 SHEET 3 AB1 5 LEU C 125 ASN C 135 -1 N LEU C 131 O PHE C 144 SHEET 4 AB1 5 ASP C 54 ALA C 63 -1 N ARG C 60 O ILE C 130 SHEET 5 AB1 5 VAL C 93 TYR C 95 -1 O VAL C 93 N VAL C 56 SHEET 1 AB2 4 LEU C 34 ASP C 37 0 SHEET 2 AB2 4 VAL C 105 PRO C 111 -1 O LEU C 109 N LEU C 34 SHEET 3 AB2 4 PHE C 71 TYR C 77 -1 N LYS C 76 O ALA C 106 SHEET 4 AB2 4 SER C 80 PHE C 84 -1 O SER C 80 N TYR C 77 SHEET 1 AB3 2 GLY C 117 ILE C 120 0 SHEET 2 AB3 2 VAL C 154 VAL C 156 -1 O VAL C 156 N GLY C 117 SSBOND 1 CYS A 3 CYS A 44 1555 1555 2.06 SSBOND 2 CYS B 3 CYS B 44 1555 1555 2.07 SSBOND 3 CYS C 3 CYS C 44 1555 1555 2.06 CISPEP 1 PHE A 84 PRO A 85 0 -6.00 CISPEP 2 PHE B 84 PRO B 85 0 -0.52 CISPEP 3 PHE C 84 PRO C 85 0 3.03 SITE 1 AC1 22 PHE A 1 ILE A 13 ASN A 46 ASP A 47 SITE 2 AC1 22 TYR A 48 GLU A 50 ILE A 52 ASP A 54 SITE 3 AC1 22 GLN A 133 ASN A 135 ASP A 140 SO4 A 302 SITE 4 AC1 22 HOH A 407 HOH A 425 HOH A 619 GLN B 143 SITE 5 AC1 22 HOH B 425 ILE C 13 GLY C 14 GLY C 15 SITE 6 AC1 22 PHE C 142 HOH C 418 SITE 1 AC2 9 3XO A 301 HOH A 411 HOH A 418 HOH A 446 SITE 2 AC2 9 HOH A 684 HOH B 412 GLY C 16 SER C 17 SITE 3 AC2 9 HOH C 413 SITE 1 AC3 16 PHE B 1 ILE B 13 ASN B 46 ASP B 47 SITE 2 AC3 16 TYR B 48 ILE B 52 ASP B 54 GLN B 133 SITE 3 AC3 16 ASN B 135 ASP B 140 HOH B 418 HOH B 586 SITE 4 AC3 16 HOH B 604 ARG C 60 THR C 87 3XO C 301 SITE 1 AC4 20 ILE A 13 GLY A 14 GLY A 15 PHE A 142 SITE 2 AC4 20 HOH A 412 3XO B 301 PHE C 1 ILE C 13 SITE 3 AC4 20 ASN C 46 ASP C 47 TYR C 48 ILE C 52 SITE 4 AC4 20 ASP C 54 GLN C 133 ASN C 135 ASP C 140 SITE 5 AC4 20 PHE C 142 HOH C 402 HOH C 408 HOH C 495 CRYST1 53.290 96.930 97.860 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010219 0.00000 CONECT 38 633 CONECT 633 38 CONECT 2425 3036 CONECT 3036 2425 CONECT 4842 5469 CONECT 5469 4842 CONECT 7247 7265 7278 CONECT 7248 7249 7269 7280 CONECT 7249 7248 7272 7273 CONECT 7250 7277 7281 CONECT 7251 7253 7256 7268 CONECT 7252 7253 7258 7262 CONECT 7253 7251 7252 7254 CONECT 7254 7253 7256 7267 CONECT 7255 7260 7261 7264 CONECT 7256 7251 7254 7266 CONECT 7257 7276 7282 CONECT 7258 7252 7260 7283 7284 CONECT 7259 7275 7285 CONECT 7260 7255 7258 7286 7287 CONECT 7261 7255 7262 7288 7289 CONECT 7262 7252 7261 7290 7291 CONECT 7263 7279 7292 CONECT 7264 7255 7293 7294 7295 CONECT 7265 7247 7274 7275 7296 CONECT 7266 7256 CONECT 7267 7254 CONECT 7268 7251 7269 7297 CONECT 7269 7248 7268 7270 CONECT 7270 7269 7271 7298 CONECT 7271 7270 7273 7299 CONECT 7272 7249 CONECT 7273 7249 7271 7274 CONECT 7274 7265 7273 CONECT 7275 7259 7265 7276 7300 CONECT 7276 7257 7275 7277 7301 CONECT 7277 7250 7276 7278 7302 CONECT 7278 7247 7277 7279 7303 CONECT 7279 7263 7278 7304 7305 CONECT 7280 7248 CONECT 7281 7250 CONECT 7282 7257 CONECT 7283 7258 CONECT 7284 7258 CONECT 7285 7259 CONECT 7286 7260 CONECT 7287 7260 CONECT 7288 7261 CONECT 7289 7261 CONECT 7290 7262 CONECT 7291 7262 CONECT 7292 7263 CONECT 7293 7264 CONECT 7294 7264 CONECT 7295 7264 CONECT 7296 7265 CONECT 7297 7268 CONECT 7298 7270 CONECT 7299 7271 CONECT 7300 7275 CONECT 7301 7276 CONECT 7302 7277 CONECT 7303 7278 CONECT 7304 7279 CONECT 7305 7279 CONECT 7306 7307 7308 7309 7310 CONECT 7307 7306 CONECT 7308 7306 CONECT 7309 7306 CONECT 7310 7306 CONECT 7311 7329 7342 CONECT 7312 7313 7333 7344 CONECT 7313 7312 7336 7337 CONECT 7314 7341 7345 CONECT 7315 7317 7320 7332 CONECT 7316 7317 7322 7326 CONECT 7317 7315 7316 7318 CONECT 7318 7317 7320 7331 CONECT 7319 7324 7325 7328 CONECT 7320 7315 7318 7330 CONECT 7321 7340 7346 CONECT 7322 7316 7324 7347 7348 CONECT 7323 7339 7349 CONECT 7324 7319 7322 7350 7351 CONECT 7325 7319 7326 7352 7353 CONECT 7326 7316 7325 7354 7355 CONECT 7327 7343 7356 CONECT 7328 7319 7357 7358 7359 CONECT 7329 7311 7338 7339 7360 CONECT 7330 7320 CONECT 7331 7318 CONECT 7332 7315 7333 7361 CONECT 7333 7312 7332 7334 CONECT 7334 7333 7335 7362 CONECT 7335 7334 7337 7363 CONECT 7336 7313 CONECT 7337 7313 7335 7338 CONECT 7338 7329 7337 CONECT 7339 7323 7329 7340 7364 CONECT 7340 7321 7339 7341 7365 CONECT 7341 7314 7340 7342 7366 CONECT 7342 7311 7341 7343 7367 CONECT 7343 7327 7342 7368 7369 CONECT 7344 7312 CONECT 7345 7314 CONECT 7346 7321 CONECT 7347 7322 CONECT 7348 7322 CONECT 7349 7323 CONECT 7350 7324 CONECT 7351 7324 CONECT 7352 7325 CONECT 7353 7325 CONECT 7354 7326 CONECT 7355 7326 CONECT 7356 7327 CONECT 7357 7328 CONECT 7358 7328 CONECT 7359 7328 CONECT 7360 7329 CONECT 7361 7332 CONECT 7362 7334 CONECT 7363 7335 CONECT 7364 7339 CONECT 7365 7340 CONECT 7366 7341 CONECT 7367 7342 CONECT 7368 7343 CONECT 7369 7343 CONECT 7370 7388 7401 CONECT 7371 7372 7392 7403 CONECT 7372 7371 7395 7396 CONECT 7373 7400 7404 CONECT 7374 7376 7379 7391 CONECT 7375 7376 7381 7385 CONECT 7376 7374 7375 7377 CONECT 7377 7376 7379 7390 CONECT 7378 7383 7384 7387 CONECT 7379 7374 7377 7389 CONECT 7380 7399 7405 CONECT 7381 7375 7383 7406 7407 CONECT 7382 7398 7408 CONECT 7383 7378 7381 7409 7410 CONECT 7384 7378 7385 7411 7412 CONECT 7385 7375 7384 7413 7414 CONECT 7386 7402 7415 CONECT 7387 7378 7416 7417 7418 CONECT 7388 7370 7397 7398 7419 CONECT 7389 7379 CONECT 7390 7377 CONECT 7391 7374 7392 7420 CONECT 7392 7371 7391 7393 CONECT 7393 7392 7394 7421 CONECT 7394 7393 7396 7422 CONECT 7395 7372 CONECT 7396 7372 7394 7397 CONECT 7397 7388 7396 CONECT 7398 7382 7388 7399 7423 CONECT 7399 7380 7398 7400 7424 CONECT 7400 7373 7399 7401 7425 CONECT 7401 7370 7400 7402 7426 CONECT 7402 7386 7401 7427 7428 CONECT 7403 7371 CONECT 7404 7373 CONECT 7405 7380 CONECT 7406 7381 CONECT 7407 7381 CONECT 7408 7382 CONECT 7409 7383 CONECT 7410 7383 CONECT 7411 7384 CONECT 7412 7384 CONECT 7413 7385 CONECT 7414 7385 CONECT 7415 7386 CONECT 7416 7387 CONECT 7417 7387 CONECT 7418 7387 CONECT 7419 7388 CONECT 7420 7391 CONECT 7421 7393 CONECT 7422 7394 CONECT 7423 7398 CONECT 7424 7399 CONECT 7425 7400 CONECT 7426 7401 CONECT 7427 7402 CONECT 7428 7402 MASTER 371 0 4 3 45 0 18 6 4604 3 188 39 END