HEADER HYDROLASE 08-DEC-14 4X6H TITLE DEVELOPMENT OF N-(FUNCTIONALIZED BENZOYL)-HOMOCYCLOLEUCYL- TITLE 2 GLYCINONITRILES AS POTENT CATHEPSIN K INHIBITORS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN K; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 115-329; COMPND 5 SYNONYM: CATHEPSIN O,CATHEPSIN O2,CATHEPSIN X; COMPND 6 EC: 3.4.22.38; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSK, CTSO, CTSO2; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS GS115; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 644223 KEYWDS CATHEPSIN K, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BORISEK,B.MOHAR,M.VIZOVISEK,P.SOSNOWSKI,D.TURK,B.TURK,M.NOVIC REVDAT 2 10-JAN-24 4X6H 1 REMARK REVDAT 1 23-SEP-15 4X6H 0 JRNL AUTH J.BORISEK,M.VIZOVISEK,P.SOSNOWSKI,B.TURK,D.TURK,B.MOHAR, JRNL AUTH 2 M.NOVIC JRNL TITL DEVELOPMENT OF N-(FUNCTIONALIZED JRNL TITL 2 BENZOYL)-HOMOCYCLOLEUCYL-GLYCINONITRILES AS POTENT CATHEPSIN JRNL TITL 3 K INHIBITORS. JRNL REF J.MED.CHEM. V. 58 6928 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26280490 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00746 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 92373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6868 - 3.1069 0.99 3253 171 0.1504 0.1850 REMARK 3 2 3.1069 - 2.4663 0.99 3098 163 0.1571 0.1602 REMARK 3 3 2.4663 - 2.1546 1.00 3084 162 0.1430 0.1448 REMARK 3 4 2.1546 - 1.9576 0.99 3058 161 0.1362 0.1561 REMARK 3 5 1.9576 - 1.8173 1.00 3036 160 0.1397 0.1512 REMARK 3 6 1.8173 - 1.7102 1.00 3053 160 0.1416 0.1511 REMARK 3 7 1.7102 - 1.6245 1.00 3052 161 0.1385 0.1451 REMARK 3 8 1.6245 - 1.5538 1.00 3033 160 0.1411 0.1488 REMARK 3 9 1.5538 - 1.4940 1.00 3007 158 0.1482 0.1398 REMARK 3 10 1.4940 - 1.4425 1.00 3011 159 0.1456 0.1787 REMARK 3 11 1.4425 - 1.3973 1.00 3001 157 0.1515 0.1452 REMARK 3 12 1.3973 - 1.3574 1.00 3028 160 0.1490 0.1466 REMARK 3 13 1.3574 - 1.3217 1.00 3013 158 0.1560 0.1609 REMARK 3 14 1.3217 - 1.2894 1.00 3011 159 0.1548 0.1786 REMARK 3 15 1.2894 - 1.2601 1.00 2992 157 0.1599 0.1538 REMARK 3 16 1.2601 - 1.2333 1.00 3000 158 0.1636 0.1692 REMARK 3 17 1.2333 - 1.2086 1.00 2996 158 0.1628 0.1728 REMARK 3 18 1.2086 - 1.1858 1.00 3000 158 0.1614 0.1351 REMARK 3 19 1.1858 - 1.1646 1.00 3015 159 0.1625 0.1651 REMARK 3 20 1.1646 - 1.1449 1.00 2974 156 0.1667 0.1761 REMARK 3 21 1.1449 - 1.1264 1.00 3011 159 0.1753 0.1671 REMARK 3 22 1.1264 - 1.1091 1.00 2969 156 0.1801 0.1842 REMARK 3 23 1.1091 - 1.0928 1.00 2998 158 0.1830 0.2028 REMARK 3 24 1.0928 - 1.0774 1.00 2978 156 0.1889 0.1978 REMARK 3 25 1.0774 - 1.0628 1.00 3013 159 0.2023 0.2051 REMARK 3 26 1.0628 - 1.0490 1.00 2970 156 0.2043 0.2241 REMARK 3 27 1.0490 - 1.0359 0.90 2673 141 0.2252 0.2317 REMARK 3 28 1.0359 - 1.0234 0.80 2405 126 0.2396 0.2272 REMARK 3 29 1.0234 - 1.0115 0.72 2113 112 0.2604 0.2476 REMARK 3 30 1.0115 - 1.0002 0.63 1910 100 0.2631 0.2959 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 1885 REMARK 3 ANGLE : 2.299 2574 REMARK 3 CHIRALITY : 0.144 258 REMARK 3 PLANARITY : 0.015 335 REMARK 3 DIHEDRAL : 17.091 726 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.6481 -0.7770 -12.0160 REMARK 3 T TENSOR REMARK 3 T11: 0.0528 T22: 0.0573 REMARK 3 T33: 0.0571 T12: 0.0017 REMARK 3 T13: 0.0060 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3523 L22: 0.4862 REMARK 3 L33: 0.5231 L12: 0.0988 REMARK 3 L13: 0.1219 L23: 0.2097 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.0104 S13: 0.0099 REMARK 3 S21: 0.0252 S22: -0.0150 S23: 0.0123 REMARK 3 S31: 0.0198 S32: -0.0075 S33: -0.0019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS 2011.4-1, PROTEUM REMARK 200 PLUS 2011.4-1 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92375 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 1ATK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRI-SODIUM CITRATE, 2.4 M REMARK 280 AMMONIUM SULFATE, PH 5.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.21950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.00750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.27550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.00750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.21950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.27550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C13 3XT A 301 C13 I37 A 302 0.00 REMARK 500 F22 3XT A 301 F22 I37 A 302 0.00 REMARK 500 C9 3XT A 301 C9 I37 A 302 0.00 REMARK 500 C15 3XT A 301 C15 I37 A 302 0.00 REMARK 500 N21 3XT A 301 N21 I37 A 302 0.00 REMARK 500 C8 3XT A 301 C8 I37 A 302 0.00 REMARK 500 C11 3XT A 301 C11 I37 A 302 0.00 REMARK 500 C7 3XT A 301 C7 I37 A 302 0.00 REMARK 500 C6 3XT A 301 C6 I37 A 302 0.00 REMARK 500 N12 3XT A 301 N12 I37 A 302 0.00 REMARK 500 C10 3XT A 301 C10 I37 A 302 0.00 REMARK 500 C16 3XT A 301 C16 I37 A 302 0.00 REMARK 500 C17 3XT A 301 C17 I37 A 302 0.00 REMARK 500 C18 3XT A 301 C18 I37 A 302 0.00 REMARK 500 C19 3XT A 301 C19 I37 A 302 0.00 REMARK 500 C20 3XT A 301 C20 I37 A 302 0.00 REMARK 500 O14 3XT A 301 O14 I37 A 302 0.00 REMARK 500 C13 3XT A 301 O14 I37 A 302 1.24 REMARK 500 O14 3XT A 301 C13 I37 A 302 1.24 REMARK 500 N12 3XT A 301 C13 I37 A 302 1.35 REMARK 500 C13 3XT A 301 N12 I37 A 302 1.36 REMARK 500 C16 3XT A 301 C17 I37 A 302 1.36 REMARK 500 C17 3XT A 301 C16 I37 A 302 1.36 REMARK 500 C17 3XT A 301 F22 I37 A 302 1.37 REMARK 500 C18 3XT A 301 C17 I37 A 302 1.38 REMARK 500 F22 3XT A 301 C17 I37 A 302 1.38 REMARK 500 C15 3XT A 301 C16 I37 A 302 1.38 REMARK 500 C17 3XT A 301 C18 I37 A 302 1.38 REMARK 500 C16 3XT A 301 C15 I37 A 302 1.39 REMARK 500 C20 3XT A 301 C19 I37 A 302 1.39 REMARK 500 C19 3XT A 301 C18 I37 A 302 1.39 REMARK 500 C19 3XT A 301 C20 I37 A 302 1.39 REMARK 500 C18 3XT A 301 C19 I37 A 302 1.40 REMARK 500 C20 3XT A 301 C15 I37 A 302 1.41 REMARK 500 C15 3XT A 301 C20 I37 A 302 1.41 REMARK 500 C18 3XT A 301 N21 I37 A 302 1.42 REMARK 500 N21 3XT A 301 C18 I37 A 302 1.42 REMARK 500 C6 3XT A 301 N12 I37 A 302 1.47 REMARK 500 N12 3XT A 301 C6 I37 A 302 1.47 REMARK 500 C13 3XT A 301 C15 I37 A 302 1.48 REMARK 500 C15 3XT A 301 C13 I37 A 302 1.48 REMARK 500 C8 3XT A 301 C7 I37 A 302 1.49 REMARK 500 C9 3XT A 301 C10 I37 A 302 1.49 REMARK 500 C7 3XT A 301 C8 I37 A 302 1.50 REMARK 500 C10 3XT A 301 C9 I37 A 302 1.50 REMARK 500 C7 3XT A 301 C6 I37 A 302 1.52 REMARK 500 C6 3XT A 301 C4 I37 A 302 1.52 REMARK 500 C6 3XT A 301 C7 I37 A 302 1.53 REMARK 500 C11 3XT A 301 C6 I37 A 302 1.54 REMARK 500 C6 3XT A 301 C11 I37 A 302 1.54 REMARK 500 REMARK 500 THIS ENTRY HAS 54 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 584 O HOH A 651 3644 1.80 REMARK 500 O HOH A 567 O HOH A 665 3654 1.91 REMARK 500 O HOH A 437 O HOH A 601 4455 1.98 REMARK 500 OE1 GLU A 112 O HOH A 438 1655 2.08 REMARK 500 O HOH A 562 O HOH A 624 3554 2.12 REMARK 500 O HOH A 556 O HOH A 652 2554 2.17 REMARK 500 O HOH A 548 O HOH A 574 3654 2.17 REMARK 500 O HOH A 454 O HOH A 500 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 93 CD GLU A 93 OE1 -0.072 REMARK 500 MET A 196 CG MET A 196 SD -0.212 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 21 46.65 -88.71 REMARK 500 SER A 146 -37.62 -132.92 REMARK 500 ASN A 159 64.64 -119.69 REMARK 500 LYS A 200 65.82 -102.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 44 10.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 I37 A 302 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3XT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I37 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 DBREF 4X6H A 1 215 UNP P43235 CATK_HUMAN 115 329 SEQRES 1 A 215 ALA PRO ASP SER VAL ASP TYR ARG LYS LYS GLY TYR VAL SEQRES 2 A 215 THR PRO VAL LYS ASN GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 A 215 ALA PHE SER SER VAL GLY ALA LEU GLU GLY GLN LEU LYS SEQRES 4 A 215 LYS LYS THR GLY LYS LEU LEU ASN LEU SER PRO GLN ASN SEQRES 5 A 215 LEU VAL ASP CYS VAL SER GLU ASN ASP GLY CYS GLY GLY SEQRES 6 A 215 GLY TYR MET THR ASN ALA PHE GLN TYR VAL GLN LYS ASN SEQRES 7 A 215 ARG GLY ILE ASP SER GLU ASP ALA TYR PRO TYR VAL GLY SEQRES 8 A 215 GLN GLU GLU SER CYS MET TYR ASN PRO THR GLY LYS ALA SEQRES 9 A 215 ALA LYS CYS ARG GLY TYR ARG GLU ILE PRO GLU GLY ASN SEQRES 10 A 215 GLU LYS ALA LEU LYS ARG ALA VAL ALA ARG VAL GLY PRO SEQRES 11 A 215 VAL SER VAL ALA ILE ASP ALA SER LEU THR SER PHE GLN SEQRES 12 A 215 PHE TYR SER LYS GLY VAL TYR TYR ASP GLU SER CYS ASN SEQRES 13 A 215 SER ASP ASN LEU ASN HIS ALA VAL LEU ALA VAL GLY TYR SEQRES 14 A 215 GLY ILE GLN LYS GLY ASN LYS HIS TRP ILE ILE LYS ASN SEQRES 15 A 215 SER TRP GLY GLU ASN TRP GLY ASN LYS GLY TYR ILE LEU SEQRES 16 A 215 MET ALA ARG ASN LYS ASN ASN ALA CYS GLY ILE ALA ASN SEQRES 17 A 215 LEU ALA SER PHE PRO LYS MET HET 3XT A 301 23 HET I37 A 302 23 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HETNAM 3XT 4-AMINO-3-FLUORO-N-(1-{[(2Z)-2- HETNAM 2 3XT IMINOETHYL]CARBAMOYL}CYCLOHEXYL)BENZAMIDE HETNAM I37 4-AMINO-N-{1-[(CYANOMETHYL)CARBAMOYL]CYCLOHEXYL}-3- HETNAM 2 I37 FLUOROBENZAMIDE HETNAM SO4 SULFATE ION FORMUL 2 3XT C16 H21 F N4 O2 FORMUL 3 I37 C16 H19 F N4 O2 FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 HOH *290(H2 O) HELIX 1 AA1 ARG A 8 GLY A 11 5 4 HELIX 2 AA2 SER A 24 GLY A 43 1 20 HELIX 3 AA3 SER A 49 VAL A 57 1 9 HELIX 4 AA4 ASP A 61 GLY A 65 5 5 HELIX 5 AA5 TYR A 67 ARG A 79 1 13 HELIX 6 AA6 ASN A 99 THR A 101 5 3 HELIX 7 AA7 ASN A 117 GLY A 129 1 13 HELIX 8 AA8 LEU A 139 PHE A 144 1 6 HELIX 9 AA9 ASN A 202 ILE A 206 5 5 SHEET 1 AA1 3 VAL A 5 ASP A 6 0 SHEET 2 AA1 3 HIS A 162 GLN A 172 -1 O TYR A 169 N VAL A 5 SHEET 3 AA1 3 VAL A 131 ILE A 135 -1 N VAL A 131 O ALA A 166 SHEET 1 AA2 5 VAL A 5 ASP A 6 0 SHEET 2 AA2 5 HIS A 162 GLN A 172 -1 O TYR A 169 N VAL A 5 SHEET 3 AA2 5 ASN A 175 LYS A 181 -1 O LYS A 181 N LEU A 165 SHEET 4 AA2 5 TYR A 193 ALA A 197 -1 O ILE A 194 N ILE A 180 SHEET 5 AA2 5 VAL A 149 TYR A 150 1 N TYR A 150 O LEU A 195 SHEET 1 AA3 2 ILE A 81 ASP A 82 0 SHEET 2 AA3 2 LYS A 103 ALA A 105 -1 O ALA A 104 N ILE A 81 SHEET 1 AA4 2 GLY A 109 GLU A 112 0 SHEET 2 AA4 2 SER A 211 LYS A 214 -1 O LYS A 214 N GLY A 109 SSBOND 1 CYS A 22 CYS A 63 1555 1555 2.03 SSBOND 2 CYS A 56 CYS A 96 1555 1555 2.06 SSBOND 3 CYS A 155 CYS A 204 1555 1555 2.05 SITE 1 AC1 21 GLN A 19 GLY A 23 SER A 24 CYS A 25 SITE 2 AC1 21 TRP A 26 ASP A 61 GLY A 64 GLY A 65 SITE 3 AC1 21 GLY A 66 TYR A 67 ASN A 117 GLU A 118 SITE 4 AC1 21 LYS A 119 ALA A 134 ASN A 161 ASN A 199 SITE 5 AC1 21 I37 A 302 HOH A 401 HOH A 444 HOH A 476 SITE 6 AC1 21 HOH A 590 SITE 1 AC2 11 GLY A 23 CYS A 25 TRP A 26 GLY A 64 SITE 2 AC2 11 GLY A 65 GLY A 66 ASN A 117 ASN A 161 SITE 3 AC2 11 3XT A 301 HOH A 401 HOH A 402 SITE 1 AC3 8 TYR A 67 ASN A 70 LYS A 176 ASN A 187 SITE 2 AC3 8 ASN A 199 SO4 A 305 HOH A 480 HOH A 568 SITE 1 AC4 4 ALA A 1 LYS A 119 ARG A 123 SO4 A 305 SITE 1 AC5 10 TYR A 67 LYS A 119 LYS A 122 LYS A 176 SITE 2 AC5 10 ARG A 198 ASN A 199 SO4 A 303 SO4 A 304 SITE 3 AC5 10 HOH A 482 HOH A 604 SITE 1 AC6 10 ASN A 18 LYS A 77 GLY A 185 GLU A 186 SITE 2 AC6 10 ASN A 187 HOH A 406 HOH A 412 HOH A 446 SITE 3 AC6 10 HOH A 506 HOH A 521 SITE 1 AC7 9 TYR A 110 ARG A 111 GLU A 112 LYS A 147 SITE 2 AC7 9 ASN A 190 LYS A 191 HOH A 438 HOH A 543 SITE 3 AC7 9 HOH A 616 SITE 1 AC8 7 GLN A 76 ARG A 108 GLY A 109 TYR A 110 SITE 2 AC8 7 LYS A 191 LYS A 214 HOH A 654 CRYST1 36.439 54.551 88.015 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011362 0.00000