HEADER TRANSFERASE 08-DEC-14 4X6Q TITLE AN ISOFORM-SPECIFIC MYRISTYLATION SWITCH TARGETS RIIB PKA HOLOENZYMES TITLE 2 TO MEMBRANES CAVEAT 4X6Q C-N BOND DISTANCE BETWEEN B ARG 208 - B CYS 209, AND B CYS CAVEAT 2 4X6Q 342 - B PHE 343 ARE OUTSIDE ACCEPTED RANGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE II-BETA REGULATORY COMPND 3 SUBUNIT; COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: PKA C-ALPHA; COMPND 10 EC: 2.7.11.11; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRKAR2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: PRKACA, PKACA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PKA, MEMBRANE BINDING, MOLECULAR SWITCH, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,F.YE,A.C.BASTIDAS,A.P.KORNEV,M.H.GINSBERG,S.S.TAYLOR REVDAT 7 23-OCT-24 4X6Q 1 REMARK REVDAT 6 25-DEC-19 4X6Q 1 REMARK REVDAT 5 20-SEP-17 4X6Q 1 JRNL REMARK REVDAT 4 16-SEP-15 4X6Q 1 JRNL REVDAT 3 02-SEP-15 4X6Q 1 JRNL REVDAT 2 26-AUG-15 4X6Q 1 REMARK REVDAT 1 22-JUL-15 4X6Q 0 JRNL AUTH P.ZHANG,F.YE,A.C.BASTIDAS,A.P.KORNEV,J.WU,M.H.GINSBERG, JRNL AUTH 2 S.S.TAYLOR JRNL TITL AN ISOFORM-SPECIFIC MYRISTYLATION SWITCH TARGETS TYPE II PKA JRNL TITL 2 HOLOENZYMES TO MEMBRANES. JRNL REF STRUCTURE V. 23 1563 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26278174 JRNL DOI 10.1016/J.STR.2015.07.007 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8274 - 5.7622 0.93 2723 145 0.1549 0.1951 REMARK 3 2 5.7622 - 4.5752 0.94 2641 146 0.1609 0.2198 REMARK 3 3 4.5752 - 3.9973 0.95 2643 131 0.1612 0.2210 REMARK 3 4 3.9973 - 3.6320 0.94 2568 146 0.1993 0.2649 REMARK 3 5 3.6320 - 3.3718 0.97 2653 142 0.2290 0.2771 REMARK 3 6 3.3718 - 3.1731 0.98 2680 139 0.2364 0.2899 REMARK 3 7 3.1731 - 3.0142 0.98 2675 146 0.2536 0.3870 REMARK 3 8 3.0142 - 2.8830 0.98 2687 149 0.2517 0.3319 REMARK 3 9 2.8830 - 2.7720 0.98 2677 122 0.2529 0.3666 REMARK 3 10 2.7720 - 2.6764 0.98 2673 125 0.2646 0.3487 REMARK 3 11 2.6764 - 2.5927 0.98 2648 146 0.2787 0.3267 REMARK 3 12 2.5927 - 2.5186 0.84 2303 123 0.2885 0.3911 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5020 REMARK 3 ANGLE : 1.348 6765 REMARK 3 CHIRALITY : 0.053 728 REMARK 3 PLANARITY : 0.006 870 REMARK 3 DIHEDRAL : 16.826 1890 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31571 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RIIB(R230K)2: MYRC(K7C)2 REMARK 280 HOLOENZYME WAS CONCENTRATED TO 12 MG/ML. THE CRYSTAL USED FOR REMARK 280 STRUCTURE DETERMINATION WAS OBTAINED FROM A 3 UL DROP CONTAINING REMARK 280 1:1 PROTEIN TO WELL SOLUTION WITH THE WELL SOLUTION CONTAINING REMARK 280 10% PEG8000, 8% ETHYLENE GLYCOL, 20MM MES, AT PH5.8., BATCH MODE, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 76.35700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 107.01950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 76.35700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 107.01950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 76.35700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 107.01950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 76.35700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 107.01950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ILE B 3 REMARK 465 GLU B 4 REMARK 465 ILE B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 LEU B 9 REMARK 465 THR B 10 REMARK 465 GLU B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 GLN B 14 REMARK 465 GLY B 15 REMARK 465 PHE B 16 REMARK 465 THR B 17 REMARK 465 VAL B 18 REMARK 465 GLU B 19 REMARK 465 VAL B 20 REMARK 465 LEU B 21 REMARK 465 ARG B 22 REMARK 465 HIS B 23 REMARK 465 GLN B 24 REMARK 465 PRO B 25 REMARK 465 ALA B 26 REMARK 465 ASP B 27 REMARK 465 LEU B 28 REMARK 465 LEU B 29 REMARK 465 GLU B 30 REMARK 465 PHE B 31 REMARK 465 ALA B 32 REMARK 465 LEU B 33 REMARK 465 GLN B 34 REMARK 465 HIS B 35 REMARK 465 PHE B 36 REMARK 465 THR B 37 REMARK 465 ARG B 38 REMARK 465 LEU B 39 REMARK 465 GLN B 40 REMARK 465 GLN B 41 REMARK 465 GLU B 42 REMARK 465 ASN B 43 REMARK 465 GLU B 44 REMARK 465 ARG B 45 REMARK 465 LYS B 46 REMARK 465 GLY B 47 REMARK 465 ALA B 48 REMARK 465 ALA B 49 REMARK 465 ARG B 50 REMARK 465 PHE B 51 REMARK 465 GLY B 52 REMARK 465 HIS B 53 REMARK 465 GLU B 54 REMARK 465 GLY B 55 REMARK 465 ARG B 56 REMARK 465 THR B 57 REMARK 465 TRP B 58 REMARK 465 GLY B 59 REMARK 465 ASP B 60 REMARK 465 ALA B 61 REMARK 465 GLY B 62 REMARK 465 ALA B 63 REMARK 465 ALA B 64 REMARK 465 ALA B 65 REMARK 465 GLY B 66 REMARK 465 GLY B 67 REMARK 465 GLY B 68 REMARK 465 ILE B 69 REMARK 465 PRO B 70 REMARK 465 SER B 71 REMARK 465 LYS B 72 REMARK 465 GLY B 73 REMARK 465 VAL B 74 REMARK 465 ASN B 75 REMARK 465 PHE B 76 REMARK 465 ALA B 77 REMARK 465 GLU B 78 REMARK 465 GLU B 79 REMARK 465 PRO B 80 REMARK 465 MET B 81 REMARK 465 ARG B 82 REMARK 465 SER B 83 REMARK 465 ASP B 84 REMARK 465 SER B 85 REMARK 465 GLU B 86 REMARK 465 ASN B 87 REMARK 465 GLY B 88 REMARK 465 GLU B 89 REMARK 465 GLU B 90 REMARK 465 GLU B 91 REMARK 465 GLU B 92 REMARK 465 ALA B 93 REMARK 465 ALA B 94 REMARK 465 GLU B 95 REMARK 465 ALA B 96 REMARK 465 GLY B 97 REMARK 465 ALA B 98 REMARK 465 PHE B 99 REMARK 465 ASN B 100 REMARK 465 ALA B 101 REMARK 465 PRO B 102 REMARK 465 VAL B 103 REMARK 465 GLU B 122 REMARK 465 GLU B 123 REMARK 465 GLU B 124 REMARK 465 ASP B 125 REMARK 465 ASP B 126 REMARK 465 ALA B 127 REMARK 465 GLU B 128 REMARK 465 SER B 129 REMARK 465 ARG B 325 REMARK 465 LYS B 326 REMARK 465 GLY B 327 REMARK 465 LYS B 328 REMARK 465 SER B 329 REMARK 465 GLU B 330 REMARK 465 VAL B 331 REMARK 465 GLU B 332 REMARK 465 GLU B 333 REMARK 465 ASN B 334 REMARK 465 GLY B 335 REMARK 465 ALA B 336 REMARK 465 ILE B 394 REMARK 465 ALA B 395 REMARK 465 THR B 396 REMARK 465 TYR B 397 REMARK 465 GLU B 398 REMARK 465 GLU B 399 REMARK 465 GLN B 400 REMARK 465 LEU B 401 REMARK 465 VAL B 402 REMARK 465 ALA B 403 REMARK 465 LEU B 404 REMARK 465 PHE B 405 REMARK 465 GLY B 406 REMARK 465 THR B 407 REMARK 465 ASN B 408 REMARK 465 MET B 409 REMARK 465 ASP B 410 REMARK 465 ILE B 411 REMARK 465 VAL B 412 REMARK 465 GLU B 413 REMARK 465 PRO B 414 REMARK 465 THR B 415 REMARK 465 ALA B 416 REMARK 465 GLY C 1 REMARK 465 ASN C 2 REMARK 465 ALA C 3 REMARK 465 ALA C 4 REMARK 465 ALA C 5 REMARK 465 ALA C 6 REMARK 465 LYS C 7 REMARK 465 LYS C 8 REMARK 465 GLY C 9 REMARK 465 SER C 10 REMARK 465 GLU C 11 REMARK 465 GLN C 12 REMARK 465 GLU C 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 104 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 208 N CYS B 209 1.61 REMARK 500 O ALA C 97 O HOH C 414 2.10 REMARK 500 O HOH B 536 O HOH B 540 2.10 REMARK 500 NZ LYS C 295 O HOH C 421 2.12 REMARK 500 O HOH B 505 O HOH B 506 2.18 REMARK 500 NH2 ARG B 110 OE1 GLU C 230 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 208 C CYS B 209 N -0.293 REMARK 500 CYS B 342 C PHE B 343 N -0.304 REMARK 500 PHE B 343 C ARG B 344 N 0.241 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 156 N - CA - CB ANGL. DEV. = -15.3 DEGREES REMARK 500 CYS B 203 N - CA - C ANGL. DEV. = 18.7 DEGREES REMARK 500 ARG B 208 CA - C - N ANGL. DEV. = 31.5 DEGREES REMARK 500 ARG B 208 O - C - N ANGL. DEV. = -32.3 DEGREES REMARK 500 CYS B 209 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG B 262 CB - CA - C ANGL. DEV. = -30.5 DEGREES REMARK 500 ARG B 262 N - CA - C ANGL. DEV. = 33.7 DEGREES REMARK 500 LYS B 263 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 ASN C 216 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 105 31.62 -92.89 REMARK 500 CYS B 114 113.69 -169.39 REMARK 500 CYS B 203 -77.36 -101.74 REMARK 500 ASP B 297 116.85 -39.62 REMARK 500 LEU B 307 132.87 -37.66 REMARK 500 ARG B 344 107.46 -52.52 REMARK 500 ALA B 361 -167.96 -104.60 REMARK 500 THR C 32 79.53 -111.62 REMARK 500 ASN C 36 60.04 39.98 REMARK 500 ALA C 38 -164.10 -169.61 REMARK 500 ILE C 46 -74.94 -128.22 REMARK 500 ASN C 99 119.36 -160.51 REMARK 500 ASP C 112 -158.97 -139.78 REMARK 500 ASP C 166 41.25 -148.42 REMARK 500 LYS C 168 151.95 179.44 REMARK 500 ASN C 216 -165.31 -169.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 205 VAL B 206 -141.94 REMARK 500 ARG B 208 CYS B 209 148.38 REMARK 500 TYR B 265 GLU B 266 130.43 REMARK 500 ASN C 216 LYS C 217 -135.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X6R RELATED DB: PDB DBREF 4X6Q B 1 416 UNP P31324 KAP3_MOUSE 1 416 DBREF 4X6Q C 1 350 UNP P05132 KAPCA_MOUSE 2 351 SEQADV 4X6Q LYS B 230 UNP P31324 ARG 230 CONFLICT SEQRES 1 B 416 MET SER ILE GLU ILE PRO ALA GLY LEU THR GLU LEU LEU SEQRES 2 B 416 GLN GLY PHE THR VAL GLU VAL LEU ARG HIS GLN PRO ALA SEQRES 3 B 416 ASP LEU LEU GLU PHE ALA LEU GLN HIS PHE THR ARG LEU SEQRES 4 B 416 GLN GLN GLU ASN GLU ARG LYS GLY ALA ALA ARG PHE GLY SEQRES 5 B 416 HIS GLU GLY ARG THR TRP GLY ASP ALA GLY ALA ALA ALA SEQRES 6 B 416 GLY GLY GLY ILE PRO SER LYS GLY VAL ASN PHE ALA GLU SEQRES 7 B 416 GLU PRO MET ARG SER ASP SER GLU ASN GLY GLU GLU GLU SEQRES 8 B 416 GLU ALA ALA GLU ALA GLY ALA PHE ASN ALA PRO VAL ILE SEQRES 9 B 416 ASN ARG PHE THR ARG ARG ALA SER VAL CYS ALA GLU ALA SEQRES 10 B 416 TYR ASN PRO ASP GLU GLU GLU ASP ASP ALA GLU SER ARG SEQRES 11 B 416 ILE ILE HIS PRO LYS THR ASP ASP GLN ARG ASN ARG LEU SEQRES 12 B 416 GLN GLU ALA CYS LYS ASP ILE LEU LEU PHE LYS ASN LEU SEQRES 13 B 416 ASP PRO GLU GLN MET SER GLN VAL LEU ASP ALA MET PHE SEQRES 14 B 416 GLU LYS LEU VAL LYS GLU GLY GLU HIS VAL ILE ASP GLN SEQRES 15 B 416 GLY ASP ASP GLY ASP ASN PHE TYR VAL ILE ASP ARG GLY SEQRES 16 B 416 THR PHE ASP ILE TYR VAL LYS CYS ASP GLY VAL GLY ARG SEQRES 17 B 416 CYS VAL GLY ASN TYR ASP ASN ARG GLY SER PHE GLY GLU SEQRES 18 B 416 LEU ALA LEU MET TYR ASN THR PRO LYS ALA ALA THR ILE SEQRES 19 B 416 THR ALA THR SER PRO GLY ALA LEU TRP GLY LEU ASP ARG SEQRES 20 B 416 VAL THR PHE ARG ARG ILE ILE VAL LYS ASN ASN ALA LYS SEQRES 21 B 416 LYS ARG LYS MET TYR GLU SER PHE ILE GLU SER LEU PRO SEQRES 22 B 416 PHE LEU LYS SER LEU GLU VAL SER GLU ARG LEU LYS VAL SEQRES 23 B 416 VAL ASP VAL ILE GLY THR LYS VAL TYR ASN ASP GLY GLU SEQRES 24 B 416 GLN ILE ILE ALA GLN GLY ASP LEU ALA ASP SER PHE PHE SEQRES 25 B 416 ILE VAL GLU SER GLY GLU VAL LYS ILE THR MET LYS ARG SEQRES 26 B 416 LYS GLY LYS SER GLU VAL GLU GLU ASN GLY ALA VAL GLU SEQRES 27 B 416 ILE ALA ARG CYS PHE ARG GLY GLN TYR PHE GLY GLU LEU SEQRES 28 B 416 ALA LEU VAL THR ASN LYS PRO ARG ALA ALA SER ALA HIS SEQRES 29 B 416 ALA ILE GLY THR VAL LYS CYS LEU ALA MET ASP VAL GLN SEQRES 30 B 416 ALA PHE GLU ARG LEU LEU GLY PRO CYS MET GLU ILE MET SEQRES 31 B 416 LYS ARG ASN ILE ALA THR TYR GLU GLU GLN LEU VAL ALA SEQRES 32 B 416 LEU PHE GLY THR ASN MET ASP ILE VAL GLU PRO THR ALA SEQRES 1 C 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 C 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 C 350 LEU LYS LYS TRP GLU THR PRO SER GLN ASN THR ALA GLN SEQRES 4 C 350 LEU ASP GLN PHE ASP ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 C 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SER SEQRES 6 C 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 C 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 C 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 C 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 C 350 MET VAL MET GLU TYR VAL ALA GLY GLY GLU MET PHE SER SEQRES 11 C 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 C 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 C 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 C 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 C 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 C 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 C 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 C 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 C 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 C 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 C 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 C 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 C 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 C 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 C 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 C 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 C 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE MODRES 4X6Q SEP C 139 SER MODIFIED RESIDUE MODRES 4X6Q TPO C 197 THR MODIFIED RESIDUE MODRES 4X6Q SEP C 338 SER MODIFIED RESIDUE HET SEP C 139 10 HET TPO C 197 11 HET SEP C 338 10 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 SEP 2(C3 H8 N O6 P) FORMUL 2 TPO C4 H10 N O6 P FORMUL 3 HOH *76(H2 O) HELIX 1 AA1 THR B 136 ALA B 146 1 11 HELIX 2 AA2 ILE B 150 ASN B 155 1 6 HELIX 3 AA3 ASP B 157 MET B 168 1 12 HELIX 4 AA4 GLY B 220 MET B 225 5 6 HELIX 5 AA5 ARG B 247 LYS B 263 1 17 HELIX 6 AA6 TYR B 265 GLU B 270 1 6 HELIX 7 AA7 GLU B 279 ILE B 290 1 12 HELIX 8 AA8 GLY B 349 VAL B 354 5 6 HELIX 9 AA9 VAL B 376 GLY B 384 1 9 HELIX 10 AB1 PRO B 385 LYS B 391 1 7 HELIX 11 AB2 VAL C 15 THR C 32 1 18 HELIX 12 AB3 GLN C 39 ASP C 41 5 3 HELIX 13 AB4 LYS C 76 LEU C 82 1 7 HELIX 14 AB5 GLN C 84 VAL C 98 1 15 HELIX 15 AB6 GLU C 127 GLY C 136 1 10 HELIX 16 AB7 SEP C 139 LEU C 160 1 22 HELIX 17 AB8 LYS C 168 GLU C 170 5 3 HELIX 18 AB9 THR C 201 LEU C 205 5 5 HELIX 19 AC1 ALA C 206 LEU C 211 1 6 HELIX 20 AC2 LYS C 217 GLY C 234 1 18 HELIX 21 AC3 GLN C 242 GLY C 253 1 12 HELIX 22 AC4 SER C 262 LEU C 273 1 12 HELIX 23 AC5 VAL C 288 ASN C 293 1 6 HELIX 24 AC6 HIS C 294 ALA C 298 5 5 HELIX 25 AC7 ASP C 301 GLN C 307 1 7 HELIX 26 AC8 GLY C 344 THR C 348 5 5 SHEET 1 AA1 2 VAL B 113 CYS B 114 0 SHEET 2 AA1 2 CYS C 199 GLY C 200 -1 O GLY C 200 N VAL B 113 SHEET 1 AA2 4 PHE B 169 VAL B 173 0 SHEET 2 AA2 4 GLY B 240 ASP B 246 -1 O LEU B 242 N LYS B 171 SHEET 3 AA2 4 ASN B 188 ARG B 194 -1 N VAL B 191 O TRP B 243 SHEET 4 AA2 4 SER B 218 PHE B 219 -1 O PHE B 219 N TYR B 190 SHEET 1 AA3 4 HIS B 178 ILE B 180 0 SHEET 2 AA3 4 THR B 233 ALA B 236 -1 O ILE B 234 N VAL B 179 SHEET 3 AA3 4 THR B 196 LYS B 202 -1 N TYR B 200 O THR B 233 SHEET 4 AA3 4 GLY B 207 ASP B 214 -1 O GLY B 211 N ILE B 199 SHEET 1 AA4 4 GLY B 291 TYR B 295 0 SHEET 2 AA4 4 SER B 362 ASP B 375 -1 O VAL B 369 N TYR B 295 SHEET 3 AA4 4 SER B 310 THR B 322 -1 N GLU B 318 O ILE B 366 SHEET 4 AA4 4 GLU B 338 PHE B 343 -1 O ALA B 340 N ILE B 321 SHEET 1 AA5 4 GLN B 300 ILE B 302 0 SHEET 2 AA5 4 SER B 362 ASP B 375 -1 O ALA B 363 N ILE B 302 SHEET 3 AA5 4 SER B 310 THR B 322 -1 N GLU B 318 O ILE B 366 SHEET 4 AA5 4 TYR B 347 PHE B 348 -1 O PHE B 348 N PHE B 312 SHEET 1 AA6 5 PHE C 43 GLY C 52 0 SHEET 2 AA6 5 GLY C 55 HIS C 62 -1 O LEU C 59 N LYS C 47 SHEET 3 AA6 5 HIS C 68 ASP C 75 -1 O ILE C 73 N ARG C 56 SHEET 4 AA6 5 ASN C 115 GLU C 121 -1 O MET C 118 N LYS C 72 SHEET 5 AA6 5 LEU C 106 LYS C 111 -1 N GLU C 107 O VAL C 119 SHEET 1 AA7 2 LEU C 162 ILE C 163 0 SHEET 2 AA7 2 LYS C 189 ARG C 190 -1 O LYS C 189 N ILE C 163 SHEET 1 AA8 2 LEU C 172 ILE C 174 0 SHEET 2 AA8 2 ILE C 180 VAL C 182 -1 O GLN C 181 N LEU C 173 LINK C PHE C 138 N SEP C 139 1555 1555 1.33 LINK C SEP C 139 N GLU C 140 1555 1555 1.33 LINK C TRP C 196 N TPO C 197 1555 1555 1.34 LINK C TPO C 197 N LEU C 198 1555 1555 1.34 LINK C VAL C 337 N SEP C 338 1555 1555 1.33 LINK C SEP C 338 N ILE C 339 1555 1555 1.33 CISPEP 1 ASP B 204 GLY B 205 0 -8.97 CISPEP 2 LYS B 263 MET B 264 0 4.52 CRYST1 152.714 214.039 61.872 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016162 0.00000