HEADER HYDROLASE/HYDROLASE INHIBITOR 09-DEC-14 4X6Y TITLE HUMAN SOLUBLE EPOXIDE HYDROLASE IN COMPLEX WITH A CYCLOPROPYL UREA TITLE 2 DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL EPOXIDE HYDROLASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HYDROLASE DOMAIN, UNP RESIDUES 230-555; COMPND 5 EC: 3.3.2.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.CHIYO,K.TAKAI,T.ISHII REVDAT 4 08-NOV-23 4X6Y 1 REMARK REVDAT 3 05-FEB-20 4X6Y 1 SOURCE JRNL REMARK REVDAT 2 15-APR-15 4X6Y 1 JRNL REVDAT 1 08-APR-15 4X6Y 0 JRNL AUTH K.TAKAI,N.CHIYO,T.NAKAJIMA,T.NARIAI,C.ISHIKAWA,S.NAKATANI, JRNL AUTH 2 A.IKENO,S.YAMAMOTO,T.SONE JRNL TITL THREE-DIMENSIONAL RATIONAL APPROACH TO THE DISCOVERY OF JRNL TITL 2 POTENT SUBSTITUTED CYCLOPROPYL UREA SOLUBLE EPOXIDE JRNL TITL 3 HYDROLASE INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 1705 2015 JRNL REFN ESSN 1464-3405 JRNL PMID 25800114 JRNL DOI 10.1016/J.BMCL.2015.02.076 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.9 REMARK 3 NUMBER OF REFLECTIONS : 33454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1781 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1449 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.448 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5302 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4912 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7194 ; 1.256 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11348 ; 0.781 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 630 ; 6.149 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;33.332 ;23.934 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 884 ;14.772 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.468 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 738 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5990 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1274 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2526 ; 1.031 ; 2.600 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2525 ; 1.031 ; 2.599 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3154 ; 1.794 ; 3.895 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7091 -6.4235 24.4039 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1551 REMARK 3 T33: 0.1050 T12: 0.0034 REMARK 3 T13: -0.0014 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.4769 L22: 2.2290 REMARK 3 L33: 1.2706 L12: -0.4533 REMARK 3 L13: -0.1276 L23: 0.5494 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: -0.1060 S13: -0.1127 REMARK 3 S21: 0.1976 S22: -0.0076 S23: 0.0033 REMARK 3 S31: 0.0412 S32: -0.1115 S33: 0.0427 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 369 A 430 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3623 9.4191 27.8115 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.2540 REMARK 3 T33: 0.1997 T12: 0.1394 REMARK 3 T13: 0.0478 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 1.7932 L22: 4.6582 REMARK 3 L33: 2.3806 L12: 1.0671 REMARK 3 L13: -0.3635 L23: -0.3096 REMARK 3 S TENSOR REMARK 3 S11: 0.1390 S12: -0.2046 S13: 0.3702 REMARK 3 S21: 0.5680 S22: -0.1226 S23: 0.5699 REMARK 3 S31: -0.2406 S32: -0.4040 S33: -0.0164 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 431 A 545 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4663 3.9876 30.3573 REMARK 3 T TENSOR REMARK 3 T11: 0.1787 T22: 0.1530 REMARK 3 T33: 0.0551 T12: 0.0416 REMARK 3 T13: -0.0078 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 2.4274 L22: 1.8716 REMARK 3 L33: 1.3886 L12: -0.1320 REMARK 3 L13: -0.2869 L23: 0.4266 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.3023 S13: 0.1852 REMARK 3 S21: 0.2652 S22: -0.0074 S23: -0.0265 REMARK 3 S31: -0.0515 S32: -0.0335 S33: 0.0278 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 230 B 368 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5594 -16.7360 3.5389 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.1314 REMARK 3 T33: 0.1882 T12: 0.0101 REMARK 3 T13: 0.0180 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.3153 L22: 2.2996 REMARK 3 L33: 1.5379 L12: -0.0330 REMARK 3 L13: -0.4121 L23: 0.5527 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.1451 S13: -0.0359 REMARK 3 S21: -0.1125 S22: 0.0403 S23: -0.2180 REMARK 3 S31: -0.0135 S32: 0.0588 S33: -0.0404 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 369 B 429 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7797 -31.6598 -14.4321 REMARK 3 T TENSOR REMARK 3 T11: 0.3026 T22: 0.2116 REMARK 3 T33: 0.2094 T12: 0.0191 REMARK 3 T13: 0.1068 T23: -0.1786 REMARK 3 L TENSOR REMARK 3 L11: 2.5113 L22: 3.4868 REMARK 3 L33: 3.5719 L12: 1.4562 REMARK 3 L13: 0.1899 L23: -1.0426 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: 0.4855 S13: -0.4591 REMARK 3 S21: -0.8859 S22: 0.0262 S23: -0.3801 REMARK 3 S31: 0.4080 S32: 0.1786 S33: 0.0597 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 430 B 545 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9908 -27.4426 -0.6264 REMARK 3 T TENSOR REMARK 3 T11: 0.0922 T22: 0.0953 REMARK 3 T33: 0.2163 T12: 0.0290 REMARK 3 T13: 0.0692 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 1.7144 L22: 2.7681 REMARK 3 L33: 1.5599 L12: 0.0190 REMARK 3 L13: 0.0538 L23: 0.0330 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.1932 S13: -0.2768 REMARK 3 S21: -0.2348 S22: 0.0152 S23: -0.4345 REMARK 3 S31: 0.2864 S32: 0.1155 S33: -0.0233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4X6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000204761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.4 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3ANS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V) PEG8000, 200MM SODIUM IODIDE, REMARK 280 PH 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.61400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.36100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.61400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.36100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 220 REMARK 465 LYS A 221 REMARK 465 LYS A 222 REMARK 465 GLY A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 ALA A 546 REMARK 465 ARG A 547 REMARK 465 ASN A 548 REMARK 465 PRO A 549 REMARK 465 PRO A 550 REMARK 465 VAL A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 LYS A 554 REMARK 465 MET A 555 REMARK 465 MET B 220 REMARK 465 LYS B 221 REMARK 465 LYS B 222 REMARK 465 GLY B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 ALA B 546 REMARK 465 ARG B 547 REMARK 465 ASN B 548 REMARK 465 PRO B 549 REMARK 465 PRO B 550 REMARK 465 VAL B 551 REMARK 465 VAL B 552 REMARK 465 SER B 553 REMARK 465 LYS B 554 REMARK 465 MET B 555 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 269 -148.10 -120.21 REMARK 500 ASP A 335 -125.81 62.96 REMARK 500 ASN A 359 -45.06 80.69 REMARK 500 PHE A 381 36.05 -87.75 REMARK 500 MET A 419 76.30 -64.76 REMARK 500 HIS A 420 -44.41 -151.69 REMARK 500 ASN A 431 34.00 -142.02 REMARK 500 SER A 544 -70.77 -104.35 REMARK 500 SER B 231 -160.89 -120.81 REMARK 500 GLU B 269 -143.27 -117.50 REMARK 500 ASP B 335 -129.97 63.32 REMARK 500 ASN B 359 -41.54 76.19 REMARK 500 MET B 419 32.58 -99.81 REMARK 500 HIS B 420 -72.27 -72.60 REMARK 500 SER B 479 14.37 -145.82 REMARK 500 SER B 544 -61.55 -94.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 247 VAL A 248 -148.79 REMARK 500 MET A 291 ASP A 292 146.88 REMARK 500 MET B 291 ASP B 292 147.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S94 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S94 B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X6X RELATED DB: PDB DBREF 4X6Y A 230 555 UNP P34913 HYES_HUMAN 230 555 DBREF 4X6Y B 230 555 UNP P34913 HYES_HUMAN 230 555 SEQADV 4X6Y MET A 220 UNP P34913 EXPRESSION TAG SEQADV 4X6Y LYS A 221 UNP P34913 EXPRESSION TAG SEQADV 4X6Y LYS A 222 UNP P34913 EXPRESSION TAG SEQADV 4X6Y GLY A 223 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS A 224 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS A 225 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS A 226 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS A 227 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS A 228 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS A 229 UNP P34913 EXPRESSION TAG SEQADV 4X6Y MET B 220 UNP P34913 EXPRESSION TAG SEQADV 4X6Y LYS B 221 UNP P34913 EXPRESSION TAG SEQADV 4X6Y LYS B 222 UNP P34913 EXPRESSION TAG SEQADV 4X6Y GLY B 223 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS B 224 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS B 225 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS B 226 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS B 227 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS B 228 UNP P34913 EXPRESSION TAG SEQADV 4X6Y HIS B 229 UNP P34913 EXPRESSION TAG SEQRES 1 A 336 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS THR SER CYS SEQRES 2 A 336 ASN PRO SER ASP MET SER HIS GLY TYR VAL THR VAL LYS SEQRES 3 A 336 PRO ARG VAL ARG LEU HIS PHE VAL GLU LEU GLY SER GLY SEQRES 4 A 336 PRO ALA VAL CYS LEU CYS HIS GLY PHE PRO GLU SER TRP SEQRES 5 A 336 TYR SER TRP ARG TYR GLN ILE PRO ALA LEU ALA GLN ALA SEQRES 6 A 336 GLY TYR ARG VAL LEU ALA MET ASP MET LYS GLY TYR GLY SEQRES 7 A 336 GLU SER SER ALA PRO PRO GLU ILE GLU GLU TYR CYS MET SEQRES 8 A 336 GLU VAL LEU CYS LYS GLU MET VAL THR PHE LEU ASP LYS SEQRES 9 A 336 LEU GLY LEU SER GLN ALA VAL PHE ILE GLY HIS ASP TRP SEQRES 10 A 336 GLY GLY MET LEU VAL TRP TYR MET ALA LEU PHE TYR PRO SEQRES 11 A 336 GLU ARG VAL ARG ALA VAL ALA SER LEU ASN THR PRO PHE SEQRES 12 A 336 ILE PRO ALA ASN PRO ASN MET SER PRO LEU GLU SER ILE SEQRES 13 A 336 LYS ALA ASN PRO VAL PHE ASP TYR GLN LEU TYR PHE GLN SEQRES 14 A 336 GLU PRO GLY VAL ALA GLU ALA GLU LEU GLU GLN ASN LEU SEQRES 15 A 336 SER ARG THR PHE LYS SER LEU PHE ARG ALA SER ASP GLU SEQRES 16 A 336 SER VAL LEU SER MET HIS LYS VAL CYS GLU ALA GLY GLY SEQRES 17 A 336 LEU PHE VAL ASN SER PRO GLU GLU PRO SER LEU SER ARG SEQRES 18 A 336 MET VAL THR GLU GLU GLU ILE GLN PHE TYR VAL GLN GLN SEQRES 19 A 336 PHE LYS LYS SER GLY PHE ARG GLY PRO LEU ASN TRP TYR SEQRES 20 A 336 ARG ASN MET GLU ARG ASN TRP LYS TRP ALA CYS LYS SER SEQRES 21 A 336 LEU GLY ARG LYS ILE LEU ILE PRO ALA LEU MET VAL THR SEQRES 22 A 336 ALA GLU LYS ASP PHE VAL LEU VAL PRO GLN MET SER GLN SEQRES 23 A 336 HIS MET GLU ASP TRP ILE PRO HIS LEU LYS ARG GLY HIS SEQRES 24 A 336 ILE GLU ASP CYS GLY HIS TRP THR GLN MET ASP LYS PRO SEQRES 25 A 336 THR GLU VAL ASN GLN ILE LEU ILE LYS TRP LEU ASP SER SEQRES 26 A 336 ASP ALA ARG ASN PRO PRO VAL VAL SER LYS MET SEQRES 1 B 336 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS THR SER CYS SEQRES 2 B 336 ASN PRO SER ASP MET SER HIS GLY TYR VAL THR VAL LYS SEQRES 3 B 336 PRO ARG VAL ARG LEU HIS PHE VAL GLU LEU GLY SER GLY SEQRES 4 B 336 PRO ALA VAL CYS LEU CYS HIS GLY PHE PRO GLU SER TRP SEQRES 5 B 336 TYR SER TRP ARG TYR GLN ILE PRO ALA LEU ALA GLN ALA SEQRES 6 B 336 GLY TYR ARG VAL LEU ALA MET ASP MET LYS GLY TYR GLY SEQRES 7 B 336 GLU SER SER ALA PRO PRO GLU ILE GLU GLU TYR CYS MET SEQRES 8 B 336 GLU VAL LEU CYS LYS GLU MET VAL THR PHE LEU ASP LYS SEQRES 9 B 336 LEU GLY LEU SER GLN ALA VAL PHE ILE GLY HIS ASP TRP SEQRES 10 B 336 GLY GLY MET LEU VAL TRP TYR MET ALA LEU PHE TYR PRO SEQRES 11 B 336 GLU ARG VAL ARG ALA VAL ALA SER LEU ASN THR PRO PHE SEQRES 12 B 336 ILE PRO ALA ASN PRO ASN MET SER PRO LEU GLU SER ILE SEQRES 13 B 336 LYS ALA ASN PRO VAL PHE ASP TYR GLN LEU TYR PHE GLN SEQRES 14 B 336 GLU PRO GLY VAL ALA GLU ALA GLU LEU GLU GLN ASN LEU SEQRES 15 B 336 SER ARG THR PHE LYS SER LEU PHE ARG ALA SER ASP GLU SEQRES 16 B 336 SER VAL LEU SER MET HIS LYS VAL CYS GLU ALA GLY GLY SEQRES 17 B 336 LEU PHE VAL ASN SER PRO GLU GLU PRO SER LEU SER ARG SEQRES 18 B 336 MET VAL THR GLU GLU GLU ILE GLN PHE TYR VAL GLN GLN SEQRES 19 B 336 PHE LYS LYS SER GLY PHE ARG GLY PRO LEU ASN TRP TYR SEQRES 20 B 336 ARG ASN MET GLU ARG ASN TRP LYS TRP ALA CYS LYS SER SEQRES 21 B 336 LEU GLY ARG LYS ILE LEU ILE PRO ALA LEU MET VAL THR SEQRES 22 B 336 ALA GLU LYS ASP PHE VAL LEU VAL PRO GLN MET SER GLN SEQRES 23 B 336 HIS MET GLU ASP TRP ILE PRO HIS LEU LYS ARG GLY HIS SEQRES 24 B 336 ILE GLU ASP CYS GLY HIS TRP THR GLN MET ASP LYS PRO SEQRES 25 B 336 THR GLU VAL ASN GLN ILE LEU ILE LYS TRP LEU ASP SER SEQRES 26 B 336 ASP ALA ARG ASN PRO PRO VAL VAL SER LYS MET HET S94 A 601 25 HET S94 B 601 25 HETNAM S94 4-PHENOXY-N-[(1S,2R)-2-PHENYLCYCLOPROPYL]PIPERIDINE-1- HETNAM 2 S94 CARBOXAMIDE FORMUL 3 S94 2(C21 H24 N2 O2) FORMUL 5 HOH *88(H2 O) HELIX 1 AA1 ASN A 233 MET A 237 5 5 HELIX 2 AA2 SER A 270 ARG A 275 5 6 HELIX 3 AA3 GLN A 277 ALA A 284 1 8 HELIX 4 AA4 GLU A 304 TYR A 308 5 5 HELIX 5 AA5 CYS A 309 GLY A 325 1 17 HELIX 6 AA6 ASP A 335 TYR A 348 1 14 HELIX 7 AA7 PRO A 371 ALA A 377 1 7 HELIX 8 AA8 ASN A 378 VAL A 380 5 3 HELIX 9 AA9 PHE A 381 PHE A 387 1 7 HELIX 10 AB1 GLY A 391 ASN A 400 1 10 HELIX 11 AB2 ASN A 400 PHE A 409 1 10 HELIX 12 AB3 ALA A 411 SER A 415 5 5 HELIX 13 AB4 LYS A 421 GLY A 426 1 6 HELIX 14 AB5 THR A 443 LYS A 455 1 13 HELIX 15 AB6 PHE A 459 TRP A 465 1 7 HELIX 16 AB7 ASN A 468 CYS A 477 1 10 HELIX 17 AB8 LYS A 478 LEU A 480 5 3 HELIX 18 AB9 VAL A 500 GLN A 505 5 6 HELIX 19 AC1 HIS A 506 ILE A 511 5 6 HELIX 20 AC2 TRP A 525 LYS A 530 1 6 HELIX 21 AC3 LYS A 530 ASP A 545 1 16 HELIX 22 AC4 ASN B 233 MET B 237 5 5 HELIX 23 AC5 SER B 270 ARG B 275 5 6 HELIX 24 AC6 GLN B 277 ALA B 284 1 8 HELIX 25 AC7 GLU B 304 TYR B 308 5 5 HELIX 26 AC8 CYS B 309 GLY B 325 1 17 HELIX 27 AC9 ASP B 335 TYR B 348 1 14 HELIX 28 AD1 SER B 370 LYS B 376 1 7 HELIX 29 AD2 ALA B 377 VAL B 380 5 4 HELIX 30 AD3 PHE B 381 PHE B 387 1 7 HELIX 31 AD4 GLY B 391 ASN B 400 1 10 HELIX 32 AD5 ASN B 400 PHE B 409 1 10 HELIX 33 AD6 ALA B 411 SER B 415 5 5 HELIX 34 AD7 LYS B 421 GLY B 426 1 6 HELIX 35 AD8 THR B 443 GLY B 458 1 16 HELIX 36 AD9 PHE B 459 TRP B 465 1 7 HELIX 37 AE1 ASN B 468 CYS B 477 1 10 HELIX 38 AE2 VAL B 500 GLN B 505 5 6 HELIX 39 AE3 HIS B 506 TRP B 510 5 5 HELIX 40 AE4 TRP B 525 LYS B 530 1 6 HELIX 41 AE5 LYS B 530 ASP B 545 1 16 SHEET 1 AA116 LYS A 515 ILE A 519 0 SHEET 2 AA116 ALA A 488 ALA A 493 1 N THR A 492 O ILE A 519 SHEET 3 AA116 VAL A 352 LEU A 358 1 N SER A 357 O VAL A 491 SHEET 4 AA116 ALA A 329 HIS A 334 1 N GLY A 333 O LEU A 358 SHEET 5 AA116 ALA A 260 CYS A 264 1 N CYS A 262 O VAL A 330 SHEET 6 AA116 ARG A 287 MET A 291 1 O LEU A 289 N VAL A 261 SHEET 7 AA116 VAL A 248 LEU A 255 -1 N LEU A 255 O VAL A 288 SHEET 8 AA116 SER A 238 LYS A 245 -1 N GLY A 240 O PHE A 252 SHEET 9 AA116 SER B 238 LYS B 245 -1 O HIS B 239 N TYR A 241 SHEET 10 AA116 VAL B 248 LEU B 255 -1 O PHE B 252 N GLY B 240 SHEET 11 AA116 ARG B 287 MET B 291 -1 O VAL B 288 N LEU B 255 SHEET 12 AA116 ALA B 260 CYS B 264 1 N LEU B 263 O LEU B 289 SHEET 13 AA116 ALA B 329 HIS B 334 1 O VAL B 330 N CYS B 262 SHEET 14 AA116 VAL B 352 LEU B 358 1 O LEU B 358 N GLY B 333 SHEET 15 AA116 ALA B 488 ALA B 493 1 O LEU B 489 N SER B 357 SHEET 16 AA116 LYS B 515 ILE B 519 1 O LYS B 515 N ALA B 488 CISPEP 1 PHE A 267 PRO A 268 0 -11.57 CISPEP 2 PHE B 267 PRO B 268 0 -13.48 SITE 1 AC1 9 PHE A 267 ASP A 335 MET A 339 TYR A 383 SITE 2 AC1 9 GLN A 384 LEU A 408 TYR A 466 LEU A 499 SITE 3 AC1 9 HIS A 524 SITE 1 AC2 8 PHE B 267 ASP B 335 TRP B 336 MET B 339 SITE 2 AC2 8 TYR B 383 LEU B 408 TYR B 466 HIS B 524 CRYST1 129.228 80.722 87.326 90.00 126.22 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007738 0.000000 0.005668 0.00000 SCALE2 0.000000 0.012388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014194 0.00000