HEADER CELL ADHESION 11-DEC-14 4X9B TITLE CRYSTAL STRUCTURE OF DSCAM1 ISOFORM 4.44, N-TERMINAL FOUR IG DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOWN SYNDROME CELL ADHESION MOLECULE, ISOFORM 4.44; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL FOUR IG DOMAINS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_TAXID: 7227; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS IG FOLD, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Q.CHEN,Y.YU,S.A.LI,L.CHENG REVDAT 4 08-NOV-23 4X9B 1 HETSYN LINK REVDAT 3 29-JUL-20 4X9B 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 05-OCT-16 4X9B 1 JRNL REVDAT 1 16-DEC-15 4X9B 0 JRNL AUTH S.A.LI,L.CHENG,Y.YU,Q.CHEN JRNL TITL STRUCTURAL BASIS OF DSCAM1 HOMODIMERIZATION: INSIGHTS INTO JRNL TITL 2 CONTEXT CONSTRAINT FOR PROTEIN RECOGNITION JRNL REF SCI ADV V. 2 01118 2016 JRNL REFN ESSN 2375-2548 JRNL PMID 27386517 JRNL DOI 10.1126/SCIADV.1501118 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8622 - 4.2077 1.00 6514 151 0.1797 0.1963 REMARK 3 2 4.2077 - 3.3400 1.00 6348 146 0.1774 0.2368 REMARK 3 3 3.3400 - 2.9179 1.00 6350 143 0.2120 0.2935 REMARK 3 4 2.9179 - 2.6511 1.00 6350 142 0.2375 0.3101 REMARK 3 5 2.6511 - 2.4611 1.00 6292 142 0.2486 0.3342 REMARK 3 6 2.4611 - 2.3160 1.00 6309 144 0.2606 0.3141 REMARK 3 7 2.3160 - 2.2000 0.99 6214 139 0.2765 0.3350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6229 REMARK 3 ANGLE : 1.025 8450 REMARK 3 CHIRALITY : 0.039 978 REMARK 3 PLANARITY : 0.005 1088 REMARK 3 DIHEDRAL : 14.913 2313 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45397 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V5M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 0.1M CALCIUM REMARK 280 CHLORIDE, 30%(W/V) PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.90750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 ASP A 0 REMARK 465 GLY A 393 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 ASP B 0 REMARK 465 GLN B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 3 REMARK 465 MET B 33 REMARK 465 PRO B 34 REMARK 465 GLU B 35 REMARK 465 ILE B 36 REMARK 465 ILE B 37 REMARK 465 GLY B 392 REMARK 465 GLY B 393 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 231 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 368 OH TYR B 372 2.03 REMARK 500 O HOH B 543 O HOH B 552 2.12 REMARK 500 O HOH A 550 O HOH A 641 2.14 REMARK 500 O HOH B 516 O HOH B 519 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 78 O6 MAN C 4 2546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 52 -58.33 -123.99 REMARK 500 LEU A 191 -61.85 -99.36 REMARK 500 VAL A 210 -65.09 -108.68 REMARK 500 SER A 231 -4.22 79.97 REMARK 500 SER A 273 -115.87 52.68 REMARK 500 ASN A 338 139.44 -173.59 REMARK 500 ARG B 53 175.14 176.59 REMARK 500 VAL B 75 -63.73 -97.57 REMARK 500 VAL B 138 -63.26 -92.84 REMARK 500 GLN B 154 -141.69 48.65 REMARK 500 GLU B 173 70.32 42.10 REMARK 500 VAL B 210 -74.60 -109.43 REMARK 500 SER B 231 -5.64 71.62 REMARK 500 ARG B 268 -61.65 -95.70 REMARK 500 SER B 273 -114.94 53.19 REMARK 500 GLU B 356 147.49 -178.23 REMARK 500 GLU B 362 -75.57 -118.66 REMARK 500 GLN B 380 -62.36 -106.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 155 GLY B 156 137.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 672 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 673 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 674 DISTANCE = 6.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 9 OE2 REMARK 620 2 HOH A 597 O 107.3 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WVR RELATED DB: PDB REMARK 900 RELATED ID: 4X5L RELATED DB: PDB REMARK 900 RELATED ID: 4X83 RELATED DB: PDB REMARK 900 RELATED ID: 4X8X RELATED DB: PDB REMARK 900 RELATED ID: 4X9F RELATED DB: PDB REMARK 900 RELATED ID: 4X9G RELATED DB: PDB REMARK 900 RELATED ID: 4X9H RELATED DB: PDB REMARK 900 RELATED ID: 4X9I RELATED DB: PDB REMARK 900 RELATED ID: 4XB8 RELATED DB: PDB REMARK 900 RELATED ID: 4XB7 RELATED DB: PDB DBREF 4X9B A -3 393 PDB 4X9B 4X9B -3 393 DBREF 4X9B B -3 393 PDB 4X9B 4X9B -3 393 SEQRES 1 A 397 GLY GLY ALA ASP GLN LYS GLY PRO VAL PHE LEU LYS GLU SEQRES 2 A 397 PRO THR ASN ARG ILE ASP PHE SER ASN SER THR GLY ALA SEQRES 3 A 397 GLU ILE GLU CYS LYS ALA SER GLY ASN PRO MET PRO GLU SEQRES 4 A 397 ILE ILE TRP ILE ARG SER ASP GLY THR ALA VAL GLY ASP SEQRES 5 A 397 VAL PRO GLY LEU ARG GLN ILE SER SER ASP GLY LYS LEU SEQRES 6 A 397 VAL PHE PRO PRO PHE ARG ALA GLU ASP TYR ARG GLN GLU SEQRES 7 A 397 VAL HIS ALA GLN VAL TYR ALA CYS LEU ALA ARG ASN GLN SEQRES 8 A 397 PHE GLY SER ILE ILE SER ARG ASP VAL HIS VAL ARG ALA SEQRES 9 A 397 VAL VAL GLN GLN PHE TYR GLU SER GLU VAL ASN ASN GLU SEQRES 10 A 397 TYR VAL ILE ARG GLY ASN ALA ALA VAL LEU LYS CYS SER SEQRES 11 A 397 ILE PRO SER PHE VAL ALA ASP PHE VAL GLN VAL VAL SER SEQRES 12 A 397 TRP GLN ASP GLU GLU GLY GLN LEU TYR GLY SER LEU GLY SEQRES 13 A 397 ASP GLN GLN GLY THR ASP GLY LYS TYR LEU VAL LEU PRO SEQRES 14 A 397 SER GLY GLU LEU HIS ILE ARG GLU VAL GLY PRO GLU ASP SEQRES 15 A 397 GLY TYR LYS SER TYR GLN CYS ARG THR LYS HIS ARG LEU SEQRES 16 A 397 THR GLY GLU THR ARG LEU SER ALA THR LYS GLY ARG LEU SEQRES 17 A 397 VAL ILE THR GLU PRO VAL GLY SER LYS ALA PRO THR PHE SEQRES 18 A 397 ALA THR ALA SER LYS ILE SER SER LEU LEU GLY SER SER SEQRES 19 A 397 SER SER ASP ILE VAL LEU LEU CYS GLN ALA GLN ALA PHE SEQRES 20 A 397 PRO VAL PRO TYR THR ARG TRP TYR LYS PHE ILE GLU GLY SEQRES 21 A 397 THR THR ARG LYS GLN ALA VAL VAL LEU ASN ASP ARG VAL SEQRES 22 A 397 LYS GLN VAL SER GLY THR LEU ILE ILE LYS ASP ALA VAL SEQRES 23 A 397 VAL GLU ASP SER GLY LYS TYR LEU CYS VAL VAL ASN ASN SEQRES 24 A 397 SER VAL GLY GLY GLU SER VAL GLU THR VAL LEU THR VAL SEQRES 25 A 397 THR ALA PRO LEU SER ALA LYS ILE ASP PRO PRO THR GLN SEQRES 26 A 397 THR VAL ASP PHE GLY ARG PRO ALA VAL PHE THR CYS GLN SEQRES 27 A 397 TYR THR GLY ASN PRO ILE LYS THR VAL SER TRP MET LYS SEQRES 28 A 397 ASP GLY LYS ALA ILE GLY HIS SER GLU PRO VAL LEU ARG SEQRES 29 A 397 ILE GLU SER VAL LYS LYS GLU ASP LYS GLY MET TYR GLN SEQRES 30 A 397 CYS PHE VAL ARG ASN ASP GLN GLU SER ALA GLU ALA SER SEQRES 31 A 397 ALA GLU LEU LYS LEU GLY GLY SEQRES 1 B 397 GLY GLY ALA ASP GLN LYS GLY PRO VAL PHE LEU LYS GLU SEQRES 2 B 397 PRO THR ASN ARG ILE ASP PHE SER ASN SER THR GLY ALA SEQRES 3 B 397 GLU ILE GLU CYS LYS ALA SER GLY ASN PRO MET PRO GLU SEQRES 4 B 397 ILE ILE TRP ILE ARG SER ASP GLY THR ALA VAL GLY ASP SEQRES 5 B 397 VAL PRO GLY LEU ARG GLN ILE SER SER ASP GLY LYS LEU SEQRES 6 B 397 VAL PHE PRO PRO PHE ARG ALA GLU ASP TYR ARG GLN GLU SEQRES 7 B 397 VAL HIS ALA GLN VAL TYR ALA CYS LEU ALA ARG ASN GLN SEQRES 8 B 397 PHE GLY SER ILE ILE SER ARG ASP VAL HIS VAL ARG ALA SEQRES 9 B 397 VAL VAL GLN GLN PHE TYR GLU SER GLU VAL ASN ASN GLU SEQRES 10 B 397 TYR VAL ILE ARG GLY ASN ALA ALA VAL LEU LYS CYS SER SEQRES 11 B 397 ILE PRO SER PHE VAL ALA ASP PHE VAL GLN VAL VAL SER SEQRES 12 B 397 TRP GLN ASP GLU GLU GLY GLN LEU TYR GLY SER LEU GLY SEQRES 13 B 397 ASP GLN GLN GLY THR ASP GLY LYS TYR LEU VAL LEU PRO SEQRES 14 B 397 SER GLY GLU LEU HIS ILE ARG GLU VAL GLY PRO GLU ASP SEQRES 15 B 397 GLY TYR LYS SER TYR GLN CYS ARG THR LYS HIS ARG LEU SEQRES 16 B 397 THR GLY GLU THR ARG LEU SER ALA THR LYS GLY ARG LEU SEQRES 17 B 397 VAL ILE THR GLU PRO VAL GLY SER LYS ALA PRO THR PHE SEQRES 18 B 397 ALA THR ALA SER LYS ILE SER SER LEU LEU GLY SER SER SEQRES 19 B 397 SER SER ASP ILE VAL LEU LEU CYS GLN ALA GLN ALA PHE SEQRES 20 B 397 PRO VAL PRO TYR THR ARG TRP TYR LYS PHE ILE GLU GLY SEQRES 21 B 397 THR THR ARG LYS GLN ALA VAL VAL LEU ASN ASP ARG VAL SEQRES 22 B 397 LYS GLN VAL SER GLY THR LEU ILE ILE LYS ASP ALA VAL SEQRES 23 B 397 VAL GLU ASP SER GLY LYS TYR LEU CYS VAL VAL ASN ASN SEQRES 24 B 397 SER VAL GLY GLY GLU SER VAL GLU THR VAL LEU THR VAL SEQRES 25 B 397 THR ALA PRO LEU SER ALA LYS ILE ASP PRO PRO THR GLN SEQRES 26 B 397 THR VAL ASP PHE GLY ARG PRO ALA VAL PHE THR CYS GLN SEQRES 27 B 397 TYR THR GLY ASN PRO ILE LYS THR VAL SER TRP MET LYS SEQRES 28 B 397 ASP GLY LYS ALA ILE GLY HIS SER GLU PRO VAL LEU ARG SEQRES 29 B 397 ILE GLU SER VAL LYS LYS GLU ASP LYS GLY MET TYR GLN SEQRES 30 B 397 CYS PHE VAL ARG ASN ASP GLN GLU SER ALA GLU ALA SER SEQRES 31 B 397 ALA GLU LEU LYS LEU GLY GLY HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG A 405 14 HET NA A 406 1 HET NA A 407 1 HET NAG B 404 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN C6 H12 O6 FORMUL 6 NA 2(NA 1+) FORMUL 9 HOH *230(H2 O) HELIX 1 AA1 ARG A 67 TYR A 71 5 5 HELIX 2 AA2 ARG A 72 HIS A 76 1 5 HELIX 3 AA3 GLY A 175 LYS A 181 5 7 HELIX 4 AA4 VAL A 282 SER A 286 5 5 HELIX 5 AA5 LYS A 365 LYS A 369 5 5 HELIX 6 AA6 ARG B 67 TYR B 71 5 5 HELIX 7 AA7 ARG B 72 HIS B 76 1 5 HELIX 8 AA8 GLY B 175 TYR B 180 5 6 HELIX 9 AA9 VAL B 282 SER B 286 5 5 HELIX 10 AB1 LYS B 365 LYS B 369 5 5 SHEET 1 AA1 2 LYS A 2 LYS A 8 0 SHEET 2 AA1 2 LYS A 27 ASN A 31 -1 O SER A 29 N VAL A 5 SHEET 1 AA2 4 ARG A 13 SER A 17 0 SHEET 2 AA2 4 VAL A 96 VAL A 101 1 O HIS A 97 N ILE A 14 SHEET 3 AA2 4 ALA A 77 ASN A 86 -1 N TYR A 80 O VAL A 96 SHEET 4 AA2 4 GLU A 35 ILE A 39 -1 N ILE A 37 O LEU A 83 SHEET 1 AA3 4 ARG A 13 SER A 17 0 SHEET 2 AA3 4 VAL A 96 VAL A 101 1 O HIS A 97 N ILE A 14 SHEET 3 AA3 4 ALA A 77 ASN A 86 -1 N TYR A 80 O VAL A 96 SHEET 4 AA3 4 GLY A 89 ILE A 92 -1 O ILE A 91 N ALA A 84 SHEET 1 AA4 3 ALA A 22 ILE A 24 0 SHEET 2 AA4 3 LEU A 61 PHE A 63 -1 O PHE A 63 N ALA A 22 SHEET 3 AA4 3 GLN A 54 ILE A 55 -1 N GLN A 54 O VAL A 62 SHEET 1 AA5 2 GLU A 109 VAL A 110 0 SHEET 2 AA5 2 CYS A 125 SER A 126 -1 O SER A 126 N GLU A 109 SHEET 1 AA6 2 GLU A 113 ILE A 116 0 SHEET 2 AA6 2 LEU A 204 THR A 207 1 O VAL A 205 N GLU A 113 SHEET 1 AA7 3 ALA A 121 LEU A 123 0 SHEET 2 AA7 3 LEU A 169 ILE A 171 -1 O ILE A 171 N ALA A 121 SHEET 3 AA7 3 TYR A 161 VAL A 163 -1 N LEU A 162 O HIS A 170 SHEET 1 AA8 4 LEU A 147 TYR A 148 0 SHEET 2 AA8 4 VAL A 135 ASP A 142 -1 N TRP A 140 O TYR A 148 SHEET 3 AA8 4 TYR A 183 HIS A 189 -1 O GLN A 184 N GLN A 141 SHEET 4 AA8 4 THR A 195 LEU A 197 -1 O ARG A 196 N THR A 187 SHEET 1 AA9 2 LYS A 213 PHE A 217 0 SHEET 2 AA9 2 ALA A 240 PHE A 243 -1 O PHE A 243 N LYS A 213 SHEET 1 AB1 5 ILE A 223 SER A 229 0 SHEET 2 AB1 5 GLY A 299 ASP A 317 1 O THR A 309 N GLY A 228 SHEET 3 AB1 5 GLY A 287 ASN A 294 -1 N TYR A 289 O THR A 304 SHEET 4 AB1 5 TYR A 247 PHE A 253 -1 N PHE A 253 O LYS A 288 SHEET 5 AB1 5 LYS A 260 ALA A 262 -1 O GLN A 261 N LYS A 252 SHEET 1 AB2 4 ILE A 223 SER A 229 0 SHEET 2 AB2 4 GLY A 299 ASP A 317 1 O THR A 309 N GLY A 228 SHEET 3 AB2 4 ALA A 329 ASN A 338 -1 O GLN A 334 N LYS A 315 SHEET 4 AB2 4 VAL A 358 ILE A 361 -1 O LEU A 359 N PHE A 331 SHEET 1 AB3 3 ILE A 234 LEU A 236 0 SHEET 2 AB3 3 THR A 275 ILE A 278 -1 O LEU A 276 N LEU A 236 SHEET 3 AB3 3 VAL A 269 VAL A 272 -1 N LYS A 270 O ILE A 277 SHEET 1 AB4 5 THR A 320 ASP A 324 0 SHEET 2 AB4 5 SER A 382 GLY A 392 1 O LYS A 390 N GLN A 321 SHEET 3 AB4 5 GLY A 370 ARG A 377 -1 N TYR A 372 O ALA A 387 SHEET 4 AB4 5 THR A 342 LYS A 347 -1 N SER A 344 O PHE A 375 SHEET 5 AB4 5 LYS A 350 ILE A 352 -1 O LYS A 350 N LYS A 347 SHEET 1 AB5 2 VAL B 5 LYS B 8 0 SHEET 2 AB5 2 LYS B 27 SER B 29 -1 O SER B 29 N VAL B 5 SHEET 1 AB6 3 ARG B 13 SER B 17 0 SHEET 2 AB6 3 VAL B 96 VAL B 101 1 O ARG B 99 N ILE B 14 SHEET 3 AB6 3 ALA B 77 TYR B 80 -1 N TYR B 80 O VAL B 96 SHEET 1 AB7 3 ALA B 22 ILE B 24 0 SHEET 2 AB7 3 LEU B 61 PHE B 63 -1 O PHE B 63 N ALA B 22 SHEET 3 AB7 3 GLN B 54 ILE B 55 -1 N GLN B 54 O VAL B 62 SHEET 1 AB8 2 LEU B 83 ARG B 85 0 SHEET 2 AB8 2 SER B 90 ILE B 92 -1 O ILE B 91 N ALA B 84 SHEET 1 AB9 5 GLU B 113 ILE B 116 0 SHEET 2 AB9 5 GLY B 202 THR B 207 1 O VAL B 205 N GLU B 113 SHEET 3 AB9 5 SER B 182 HIS B 189 -1 N TYR B 183 O GLY B 202 SHEET 4 AB9 5 VAL B 135 GLN B 141 -1 N SER B 139 O ARG B 186 SHEET 5 AB9 5 LEU B 147 SER B 150 -1 O GLY B 149 N TRP B 140 SHEET 1 AC1 4 GLU B 113 ILE B 116 0 SHEET 2 AC1 4 GLY B 202 THR B 207 1 O VAL B 205 N GLU B 113 SHEET 3 AC1 4 SER B 182 HIS B 189 -1 N TYR B 183 O GLY B 202 SHEET 4 AC1 4 THR B 195 LEU B 197 -1 O ARG B 196 N THR B 187 SHEET 1 AC2 3 ALA B 121 LEU B 123 0 SHEET 2 AC2 3 LEU B 169 ILE B 171 -1 O ILE B 171 N ALA B 121 SHEET 3 AC2 3 TYR B 161 VAL B 163 -1 N LEU B 162 O HIS B 170 SHEET 1 AC3 2 LYS B 213 PHE B 217 0 SHEET 2 AC3 2 ALA B 240 PHE B 243 -1 O PHE B 243 N LYS B 213 SHEET 1 AC4 5 ILE B 223 SER B 229 0 SHEET 2 AC4 5 GLY B 299 ASP B 317 1 O THR B 309 N GLY B 228 SHEET 3 AC4 5 GLY B 287 ASN B 294 -1 N GLY B 287 O LEU B 306 SHEET 4 AC4 5 TYR B 247 PHE B 253 -1 N PHE B 253 O LYS B 288 SHEET 5 AC4 5 LYS B 260 ALA B 262 -1 O GLN B 261 N LYS B 252 SHEET 1 AC5 3 ILE B 223 SER B 229 0 SHEET 2 AC5 3 GLY B 299 ASP B 317 1 O THR B 309 N GLY B 228 SHEET 3 AC5 3 THR B 332 ASN B 338 -1 O GLN B 334 N LYS B 315 SHEET 1 AC6 3 ILE B 234 LEU B 236 0 SHEET 2 AC6 3 THR B 275 ILE B 278 -1 O LEU B 276 N LEU B 236 SHEET 3 AC6 3 VAL B 269 VAL B 272 -1 N LYS B 270 O ILE B 277 SHEET 1 AC7 5 THR B 320 THR B 322 0 SHEET 2 AC7 5 SER B 382 LYS B 390 1 O LYS B 390 N GLN B 321 SHEET 3 AC7 5 MET B 371 ARG B 377 -1 N TYR B 372 O ALA B 387 SHEET 4 AC7 5 THR B 342 LYS B 347 -1 N SER B 344 O PHE B 375 SHEET 5 AC7 5 LYS B 350 ALA B 351 -1 O LYS B 350 N LYS B 347 SSBOND 1 CYS A 26 CYS A 82 1555 1555 2.02 SSBOND 2 CYS A 125 CYS A 185 1555 1555 2.04 SSBOND 3 CYS A 238 CYS A 291 1555 1555 2.05 SSBOND 4 CYS A 333 CYS A 374 1555 1555 2.05 SSBOND 5 CYS B 26 CYS B 82 1555 1555 2.04 SSBOND 6 CYS B 125 CYS B 185 1555 1555 2.05 SSBOND 7 CYS B 238 CYS B 291 1555 1555 2.04 SSBOND 8 CYS B 333 CYS B 374 1555 1555 2.04 LINK ND2 ASN A 18 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 294 C1 NAG A 405 1555 1555 1.45 LINK ND2 ASN B 18 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN B 294 C1 NAG B 404 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.46 LINK OE2 GLU A 9 NA NA A 407 1555 1555 2.49 LINK NA NA A 406 O HOH A 550 1555 1555 3.15 LINK NA NA A 407 O HOH A 597 1555 1555 2.84 CISPEP 1 ASN A 31 PRO A 32 0 10.39 CISPEP 2 PHE A 243 PRO A 244 0 -7.32 CISPEP 3 ASP A 317 PRO A 318 0 -12.69 CISPEP 4 ASN A 338 PRO A 339 0 -7.45 CISPEP 5 PHE B 243 PRO B 244 0 -10.98 CISPEP 6 ASP B 317 PRO B 318 0 -10.25 CISPEP 7 ASN B 338 PRO B 339 0 -15.01 CRYST1 88.902 59.815 89.560 90.00 109.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011248 0.000000 0.003886 0.00000 SCALE2 0.000000 0.016718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011813 0.00000