HEADER RNA BINDING PROTEIN 11-DEC-14 4X9C TITLE 1.4A CRYSTAL STRUCTURE OF HFQ FROM METHANOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN MJ1435; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ1435; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PUBS520 KEYWDS HFQ, LSM PROTEINS, ARCHAEA, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.D.NIKULIN,S.V.TISHCHENKO,S.V.NIKONOVA,V.N.MURINA,A.O.MIHAILINA, AUTHOR 2 N.V.LEKONTSEVA REVDAT 4 10-JAN-24 4X9C 1 LINK REVDAT 3 24-MAY-17 4X9C 1 JRNL REVDAT 2 22-FEB-17 4X9C 1 JRNL REVDAT 1 24-DEC-14 4X9C 0 JRNL AUTH A.NIKULIN,A.MIKHAILINA,N.LEKONTSEVA,V.BALOBANOV,E.NIKONOVA, JRNL AUTH 2 S.TISHCHENKO JRNL TITL CHARACTERIZATION OF RNA-BINDING PROPERTIES OF THE ARCHAEAL JRNL TITL 2 HFQ-LIKE PROTEIN FROM METHANOCOCCUS JANNASCHII. JRNL REF J. BIOMOL. STRUCT. DYN. V. 35 1615 2017 JRNL REFN ESSN 1538-0254 JRNL PMID 27187760 JRNL DOI 10.1080/07391102.2016.1189849 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 83534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 4102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 4.3000 1.00 2963 151 0.1702 0.1991 REMARK 3 2 4.3000 - 3.4135 1.00 2807 159 0.1490 0.1715 REMARK 3 3 3.4135 - 2.9821 1.00 2807 149 0.1563 0.1772 REMARK 3 4 2.9821 - 2.7095 1.00 2823 127 0.1703 0.1885 REMARK 3 5 2.7095 - 2.5153 1.00 2758 145 0.1747 0.1818 REMARK 3 6 2.5153 - 2.3670 1.00 2782 140 0.1635 0.1859 REMARK 3 7 2.3670 - 2.2485 1.00 2755 145 0.1585 0.1827 REMARK 3 8 2.2485 - 2.1506 1.00 2732 151 0.1500 0.1883 REMARK 3 9 2.1506 - 2.0678 1.00 2729 152 0.1611 0.1937 REMARK 3 10 2.0678 - 1.9965 1.00 2771 128 0.1658 0.2020 REMARK 3 11 1.9965 - 1.9340 1.00 2743 134 0.1576 0.1754 REMARK 3 12 1.9340 - 1.8788 1.00 2736 142 0.1483 0.1523 REMARK 3 13 1.8788 - 1.8293 1.00 2737 154 0.1589 0.1778 REMARK 3 14 1.8293 - 1.7847 1.00 2736 119 0.1543 0.1630 REMARK 3 15 1.7847 - 1.7441 1.00 2735 135 0.1655 0.1704 REMARK 3 16 1.7441 - 1.7070 1.00 2731 122 0.1674 0.1941 REMARK 3 17 1.7070 - 1.6728 1.00 2725 138 0.1674 0.1812 REMARK 3 18 1.6728 - 1.6413 1.00 2712 167 0.1656 0.1680 REMARK 3 19 1.6413 - 1.6120 1.00 2738 150 0.1634 0.1669 REMARK 3 20 1.6120 - 1.5846 1.00 2698 133 0.1703 0.2058 REMARK 3 21 1.5846 - 1.5591 1.00 2719 136 0.1750 0.2122 REMARK 3 22 1.5591 - 1.5351 1.00 2765 134 0.1849 0.2064 REMARK 3 23 1.5351 - 1.5125 1.00 2685 155 0.1899 0.2249 REMARK 3 24 1.5125 - 1.4912 1.00 2709 130 0.1944 0.2231 REMARK 3 25 1.4912 - 1.4710 1.00 2698 146 0.2010 0.2353 REMARK 3 26 1.4710 - 1.4519 1.00 2724 146 0.2160 0.2512 REMARK 3 27 1.4519 - 1.4338 1.00 2726 143 0.2117 0.2588 REMARK 3 28 1.4338 - 1.4165 1.00 2717 142 0.2304 0.2304 REMARK 3 29 1.4165 - 1.4000 0.92 2471 129 0.2560 0.2781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3093 REMARK 3 ANGLE : 1.070 4134 REMARK 3 CHIRALITY : 0.045 444 REMARK 3 PLANARITY : 0.004 524 REMARK 3 DIHEDRAL : 14.111 1234 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.86 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QTX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A2 JBCSCREEN NUC-PRO 1 (50% PEG200, REMARK 280 0,1M TRIS-HCL, PH 8,0), PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.83350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.60600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.42850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.60600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.83350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.42850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 9 REMARK 465 PRO A 10 REMARK 465 LYS A 11 REMARK 465 LYS A 12 REMARK 465 VAL A 13 REMARK 465 ILE A 14 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LYS B 3 REMARK 465 PRO B 4 REMARK 465 VAL B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 GLN B 8 REMARK 465 GLN B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 12 REMARK 465 VAL B 13 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 LYS C 3 REMARK 465 PRO C 4 REMARK 465 VAL C 5 REMARK 465 LYS C 6 REMARK 465 LYS C 7 REMARK 465 GLN C 8 REMARK 465 GLN C 9 REMARK 465 PRO C 10 REMARK 465 LYS C 11 REMARK 465 LYS C 12 REMARK 465 VAL C 13 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 LYS D 3 REMARK 465 PRO D 4 REMARK 465 VAL D 5 REMARK 465 LYS D 6 REMARK 465 LYS D 7 REMARK 465 GLN D 8 REMARK 465 GLN D 9 REMARK 465 PRO D 10 REMARK 465 LYS D 11 REMARK 465 MET E 1 REMARK 465 ASN E 2 REMARK 465 LYS E 3 REMARK 465 PRO E 4 REMARK 465 VAL E 5 REMARK 465 LYS E 6 REMARK 465 LYS E 7 REMARK 465 GLN E 8 REMARK 465 GLN E 9 REMARK 465 PRO E 10 REMARK 465 LYS E 11 REMARK 465 LYS E 12 REMARK 465 VAL E 13 REMARK 465 ILE E 14 REMARK 465 PRO E 15 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 LYS F 3 REMARK 465 PRO F 4 REMARK 465 VAL F 5 REMARK 465 LYS F 6 REMARK 465 LYS F 7 REMARK 465 GLN F 8 REMARK 465 GLN F 9 REMARK 465 PRO F 10 REMARK 465 LYS F 11 REMARK 465 LYS F 12 REMARK 465 VAL F 13 REMARK 465 ILE F 14 REMARK 465 PRO F 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE C 14 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 36 O HOH D 201 2.02 REMARK 500 O HOH D 201 O HOH E 203 2.13 REMARK 500 OD1 ASP A 39 O HOH A 247 2.15 REMARK 500 OD1 ASP B 56 O HOH B 245 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 209 O HOH D 203 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 -23.10 -146.22 REMARK 500 ASN D 16 43.19 -102.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 52 O REMARK 620 2 LEU B 59 O 66.8 REMARK 620 3 HOH B 228 O 66.0 129.1 REMARK 620 4 TYR C 71 OH 141.8 122.1 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PEG D 101 O4 REMARK 620 2 HOH D 228 O 105.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG E 33 O REMARK 620 2 ASP E 67 OD2 106.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU E 59 O REMARK 620 2 TYR F 71 OH 120.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA F 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU F 49 OE2 REMARK 620 2 HOH F 239 O 102.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA E 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA E 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG F 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 F 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA F 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QTX RELATED DB: PDB REMARK 900 2QTX CONTAINES THE SAME PROTEIN REFINED WITH LOWER RESOLUTION DBREF 4X9C A 1 71 UNP Q58830 Y1435_METJA 1 71 DBREF 4X9C B 1 71 UNP Q58830 Y1435_METJA 1 71 DBREF 4X9C C 1 71 UNP Q58830 Y1435_METJA 1 71 DBREF 4X9C D 1 71 UNP Q58830 Y1435_METJA 1 71 DBREF 4X9C E 1 71 UNP Q58830 Y1435_METJA 1 71 DBREF 4X9C F 1 71 UNP Q58830 Y1435_METJA 1 71 SEQRES 1 A 71 MET ASN LYS PRO VAL LYS LYS GLN GLN PRO LYS LYS VAL SEQRES 2 A 71 ILE PRO ASN PHE GLU TYR ALA ARG ARG LEU ASN GLY LYS SEQRES 3 A 71 LYS VAL LYS ILE PHE LEU ARG ASN GLY GLU VAL LEU ASP SEQRES 4 A 71 ALA GLU VAL THR GLY VAL SER ASN TYR GLU ILE MET VAL SEQRES 5 A 71 LYS VAL GLY ASP ARG ASN LEU LEU VAL PHE LYS HIS ALA SEQRES 6 A 71 ILE ASP TYR ILE GLU TYR SEQRES 1 B 71 MET ASN LYS PRO VAL LYS LYS GLN GLN PRO LYS LYS VAL SEQRES 2 B 71 ILE PRO ASN PHE GLU TYR ALA ARG ARG LEU ASN GLY LYS SEQRES 3 B 71 LYS VAL LYS ILE PHE LEU ARG ASN GLY GLU VAL LEU ASP SEQRES 4 B 71 ALA GLU VAL THR GLY VAL SER ASN TYR GLU ILE MET VAL SEQRES 5 B 71 LYS VAL GLY ASP ARG ASN LEU LEU VAL PHE LYS HIS ALA SEQRES 6 B 71 ILE ASP TYR ILE GLU TYR SEQRES 1 C 71 MET ASN LYS PRO VAL LYS LYS GLN GLN PRO LYS LYS VAL SEQRES 2 C 71 ILE PRO ASN PHE GLU TYR ALA ARG ARG LEU ASN GLY LYS SEQRES 3 C 71 LYS VAL LYS ILE PHE LEU ARG ASN GLY GLU VAL LEU ASP SEQRES 4 C 71 ALA GLU VAL THR GLY VAL SER ASN TYR GLU ILE MET VAL SEQRES 5 C 71 LYS VAL GLY ASP ARG ASN LEU LEU VAL PHE LYS HIS ALA SEQRES 6 C 71 ILE ASP TYR ILE GLU TYR SEQRES 1 D 71 MET ASN LYS PRO VAL LYS LYS GLN GLN PRO LYS LYS VAL SEQRES 2 D 71 ILE PRO ASN PHE GLU TYR ALA ARG ARG LEU ASN GLY LYS SEQRES 3 D 71 LYS VAL LYS ILE PHE LEU ARG ASN GLY GLU VAL LEU ASP SEQRES 4 D 71 ALA GLU VAL THR GLY VAL SER ASN TYR GLU ILE MET VAL SEQRES 5 D 71 LYS VAL GLY ASP ARG ASN LEU LEU VAL PHE LYS HIS ALA SEQRES 6 D 71 ILE ASP TYR ILE GLU TYR SEQRES 1 E 71 MET ASN LYS PRO VAL LYS LYS GLN GLN PRO LYS LYS VAL SEQRES 2 E 71 ILE PRO ASN PHE GLU TYR ALA ARG ARG LEU ASN GLY LYS SEQRES 3 E 71 LYS VAL LYS ILE PHE LEU ARG ASN GLY GLU VAL LEU ASP SEQRES 4 E 71 ALA GLU VAL THR GLY VAL SER ASN TYR GLU ILE MET VAL SEQRES 5 E 71 LYS VAL GLY ASP ARG ASN LEU LEU VAL PHE LYS HIS ALA SEQRES 6 E 71 ILE ASP TYR ILE GLU TYR SEQRES 1 F 71 MET ASN LYS PRO VAL LYS LYS GLN GLN PRO LYS LYS VAL SEQRES 2 F 71 ILE PRO ASN PHE GLU TYR ALA ARG ARG LEU ASN GLY LYS SEQRES 3 F 71 LYS VAL LYS ILE PHE LEU ARG ASN GLY GLU VAL LEU ASP SEQRES 4 F 71 ALA GLU VAL THR GLY VAL SER ASN TYR GLU ILE MET VAL SEQRES 5 F 71 LYS VAL GLY ASP ARG ASN LEU LEU VAL PHE LYS HIS ALA SEQRES 6 F 71 ILE ASP TYR ILE GLU TYR HET PEG A 101 7 HET PGE A 102 10 HET EDO A 103 4 HET EDO A 104 4 HET PEG B 101 7 HET NA B 102 1 HET EDO B 103 4 HET NA C 101 1 HET EDO C 102 4 HET EDO C 103 4 HET PEG D 101 7 HET CL D 102 1 HET PEG E 101 7 HET PG4 E 102 13 HET NA E 103 1 HET NA E 104 1 HET EDO E 105 4 HET SO4 E 106 5 HET PEG F 101 7 HET PEG F 102 7 HET PG4 F 103 13 HET NA F 104 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 7 PEG 6(C4 H10 O3) FORMUL 8 PGE C6 H14 O4 FORMUL 9 EDO 6(C2 H6 O2) FORMUL 12 NA 5(NA 1+) FORMUL 18 CL CL 1- FORMUL 20 PG4 2(C8 H18 O5) FORMUL 24 SO4 O4 S 2- FORMUL 29 HOH *308(H2 O) HELIX 1 AA1 TYR A 19 ASN A 24 5 6 HELIX 2 AA2 TYR B 19 ASN B 24 5 6 HELIX 3 AA3 GLU C 18 ASN C 24 5 7 HELIX 4 AA4 TYR D 19 ASN D 24 5 6 HELIX 5 AA5 TYR E 19 ASN E 24 5 6 HELIX 6 AA6 TYR F 19 ASN F 24 5 6 SHEET 1 AA131 LYS A 27 LEU A 32 0 SHEET 2 AA131 VAL A 37 VAL A 45 -1 O ALA A 40 N VAL A 28 SHEET 3 AA131 GLU A 49 VAL A 54 -1 O MET A 51 N GLY A 44 SHEET 4 AA131 ARG A 57 PHE A 62 -1 O VAL A 61 N ILE A 50 SHEET 5 AA131 ILE B 66 TYR B 71 -1 O ILE B 69 N LEU A 60 SHEET 6 AA131 LYS B 27 LEU B 32 -1 N PHE B 31 O ASP B 67 SHEET 7 AA131 VAL B 37 VAL B 45 -1 O ALA B 40 N VAL B 28 SHEET 8 AA131 GLU B 49 VAL B 54 -1 O MET B 51 N THR B 43 SHEET 9 AA131 ARG B 57 PHE B 62 -1 O VAL B 61 N ILE B 50 SHEET 10 AA131 ILE C 66 TYR C 71 -1 O ILE C 69 N LEU B 60 SHEET 11 AA131 LYS C 27 LEU C 32 -1 N PHE C 31 O ASP C 67 SHEET 12 AA131 VAL C 37 VAL C 45 -1 O LEU C 38 N ILE C 30 SHEET 13 AA131 GLU C 49 VAL C 54 -1 O MET C 51 N THR C 43 SHEET 14 AA131 ARG C 57 PHE C 62 -1 O VAL C 61 N ILE C 50 SHEET 15 AA131 ILE D 66 TYR D 71 -1 O ILE D 69 N LEU C 60 SHEET 16 AA131 LYS D 27 LEU D 32 -1 N PHE D 31 O ASP D 67 SHEET 17 AA131 VAL D 37 VAL D 45 -1 O ALA D 40 N VAL D 28 SHEET 18 AA131 GLU D 49 VAL D 54 -1 O MET D 51 N GLY D 44 SHEET 19 AA131 ARG D 57 PHE D 62 -1 O VAL D 61 N ILE D 50 SHEET 20 AA131 ILE E 66 TYR E 71 -1 O ILE E 69 N LEU D 60 SHEET 21 AA131 LYS E 27 LEU E 32 -1 N PHE E 31 O ASP E 67 SHEET 22 AA131 VAL E 37 VAL E 45 -1 O ALA E 40 N VAL E 28 SHEET 23 AA131 GLU E 49 VAL E 54 -1 O LYS E 53 N GLU E 41 SHEET 24 AA131 ARG E 57 PHE E 62 -1 O VAL E 61 N ILE E 50 SHEET 25 AA131 ILE F 66 TYR F 71 -1 O ILE F 69 N LEU E 60 SHEET 26 AA131 LYS F 27 LEU F 32 -1 N PHE F 31 O ASP F 67 SHEET 27 AA131 VAL F 37 VAL F 45 -1 O ALA F 40 N VAL F 28 SHEET 28 AA131 GLU F 49 VAL F 54 -1 O MET F 51 N GLY F 44 SHEET 29 AA131 ARG F 57 PHE F 62 -1 O VAL F 61 N ILE F 50 SHEET 30 AA131 ILE A 66 TYR A 71 -1 N ILE A 69 O LEU F 60 SHEET 31 AA131 LYS A 27 LEU A 32 -1 N PHE A 31 O ASP A 67 LINK O VAL B 52 NA NA B 102 1555 1555 3.18 LINK O LEU B 59 NA NA B 102 1555 1555 3.00 LINK NA NA B 102 O HOH B 228 1555 1555 2.39 LINK NA NA B 102 OH TYR C 71 1555 1555 2.44 LINK NA NA C 101 O4 PEG D 101 1555 1555 2.78 LINK NA NA C 101 O HOH D 228 1555 1555 2.66 LINK O ARG E 33 NA NA E 103 1555 1555 2.88 LINK O LEU E 59 NA NA E 104 1555 1555 3.02 LINK OD2 ASP E 67 NA NA E 103 1555 1555 2.83 LINK NA NA E 104 OH TYR F 71 1555 1555 2.52 LINK OE2 GLU F 49 NA NA F 104 1555 1555 2.73 LINK NA NA F 104 O HOH F 239 1555 1555 2.65 SITE 1 AC1 10 TYR A 48 GLU A 49 PHE A 62 HIS A 64 SITE 2 AC1 10 HOH A 224 HOH A 236 GLU B 18 ALA B 20 SITE 3 AC1 10 ASN B 47 LYS B 63 SITE 1 AC2 6 LYS A 27 LYS A 29 TYR A 71 LYS D 27 SITE 2 AC2 6 LYS D 29 TYR D 71 SITE 1 AC3 9 LEU A 32 ARG A 33 GLY A 35 ASP A 67 SITE 2 AC3 9 HOH A 210 HOH A 223 ASN C 16 ASN F 34 SITE 3 AC3 9 HOH F 252 SITE 1 AC4 5 THR A 43 MET A 51 TYR B 71 EDO B 103 SITE 2 AC4 5 HOH B 243 SITE 1 AC5 6 VAL B 28 LYS B 29 ASP B 39 GLU B 70 SITE 2 AC5 6 TYR B 71 HOH B 246 SITE 1 AC6 5 MET B 51 VAL B 52 LEU B 59 HOH B 228 SITE 2 AC6 5 TYR C 71 SITE 1 AC7 2 EDO A 104 ARG B 22 SITE 1 AC8 3 HIS C 64 PEG D 101 HOH D 228 SITE 1 AC9 1 ARG C 22 SITE 1 AD1 4 LYS C 27 VAL C 28 LYS C 29 GLU C 70 SITE 1 AD2 10 TYR C 48 PHE C 62 HIS C 64 NA C 101 SITE 2 AD2 10 ASN D 47 TYR D 48 LYS D 63 HIS D 64 SITE 3 AD2 10 HOH D 247 HOH E 242 SITE 1 AD3 2 NA E 103 HOH E 254 SITE 1 AD4 10 TYR D 48 HOH D 247 TYR E 48 LYS E 63 SITE 2 AD4 10 HIS E 64 SO4 E 106 HOH E 232 HOH E 242 SITE 3 AD4 10 HOH E 249 HOH E 250 SITE 1 AD5 9 ASN E 24 LYS E 26 TYR E 71 HOH E 209 SITE 2 AD5 9 HOH E 211 HOH E 248 LYS F 27 LYS F 29 SITE 3 AD5 9 TYR F 71 SITE 1 AD6 5 ARG D 33 ASN D 34 CL D 102 ARG E 33 SITE 2 AD6 5 ASP E 67 SITE 1 AD7 5 MET E 51 VAL E 52 LYS E 53 LEU E 59 SITE 2 AD7 5 TYR F 71 SITE 1 AD8 7 LYS E 27 ASP E 39 LYS E 53 VAL E 54 SITE 2 AD8 7 GLY E 55 HOH E 206 HOH E 227 SITE 1 AD9 7 TYR E 48 HIS E 64 PEG E 101 HOH E 232 SITE 2 AD9 7 HOH E 260 TYR F 48 LYS F 63 SITE 1 AE1 6 ASN C 24 GLU F 36 VAL F 37 ARG F 57 SITE 2 AE1 6 HOH F 203 HOH F 241 SITE 1 AE2 9 ASN A 47 TYR A 48 LYS A 63 HOH A 217 SITE 2 AE2 9 TYR F 48 HIS F 64 HOH F 239 HOH F 247 SITE 3 AE2 9 HOH F 257 SITE 1 AE3 9 LYS E 27 LYS E 29 ASP E 39 GLU E 70 SITE 2 AE3 9 TYR E 71 HOH E 208 ASN F 24 LYS F 26 SITE 3 AE3 9 TYR F 71 SITE 1 AE4 5 ALA A 20 LYS A 63 GLU F 49 PHE F 62 SITE 2 AE4 5 HOH F 239 CRYST1 57.667 66.857 109.212 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017341 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009157 0.00000