HEADER OXIDOREDUCTASE 14-DEC-14 4XAE TITLE STRUCTURE OF FERULOYL-COA 6-HYDROXYLASE (F6H) FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERULOYL COA ORTHO-HYDROXYLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: F6'H1, AT3G13610, K20M4.5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN ENGINEERING, COUMARINS, 2-OXOGLUTARATE DEPENDENT DIOXYGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,P.KANDAVELU,H.ZHANG,B.C.WANG,J.ROSE,Y.YAN REVDAT 3 15-NOV-23 4XAE 1 REMARK REVDAT 2 27-SEP-23 4XAE 1 SOURCE REMARK LINK REVDAT 1 10-JUN-15 4XAE 0 JRNL AUTH X.SUN,D.ZHOU,P.KANDAVELU,H.ZHANG,Q.YUAN,B.C.WANG,J.ROSE, JRNL AUTH 2 Y.YAN JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE SPECIFICITY OF JRNL TITL 2 FERULOYL-COA 6'-HYDROXYLASE FROM ARABIDOPSIS THALIANA. JRNL REF SCI REP V. 5 10355 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 25993561 JRNL DOI 10.1038/SREP10355 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 18707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9359 - 6.5039 1.00 1438 160 0.2165 0.3183 REMARK 3 2 6.5039 - 5.1648 1.00 1384 157 0.2430 0.2780 REMARK 3 3 5.1648 - 4.5126 1.00 1359 156 0.1943 0.2589 REMARK 3 4 4.5126 - 4.1003 1.00 1381 155 0.2089 0.2488 REMARK 3 5 4.1003 - 3.8066 1.00 1375 149 0.2384 0.3058 REMARK 3 6 3.8066 - 3.5823 1.00 1332 149 0.2427 0.2745 REMARK 3 7 3.5823 - 3.4029 1.00 1366 152 0.2683 0.3068 REMARK 3 8 3.4029 - 3.2548 1.00 1374 154 0.2804 0.3336 REMARK 3 9 3.2548 - 3.1296 0.99 1333 139 0.2764 0.3495 REMARK 3 10 3.1296 - 3.0216 0.96 1309 146 0.2886 0.2982 REMARK 3 11 3.0216 - 2.9271 0.89 1215 129 0.3177 0.3773 REMARK 3 12 2.9271 - 2.8435 0.81 1100 127 0.3287 0.3810 REMARK 3 13 2.8435 - 2.7690 0.64 872 96 0.3245 0.4283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5255 REMARK 3 ANGLE : 1.194 7138 REMARK 3 CHIRALITY : 0.050 802 REMARK 3 PLANARITY : 0.007 927 REMARK 3 DIHEDRAL : 14.464 1936 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.6212 14.9831 -22.4278 REMARK 3 T TENSOR REMARK 3 T11: 0.3950 T22: 0.4243 REMARK 3 T33: 0.4316 T12: 0.0642 REMARK 3 T13: -0.0487 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.1199 L22: 0.4427 REMARK 3 L33: 0.9694 L12: -0.6666 REMARK 3 L13: -0.7153 L23: 0.2580 REMARK 3 S TENSOR REMARK 3 S11: 0.0901 S12: 0.4032 S13: -0.2770 REMARK 3 S21: -0.0251 S22: -0.0055 S23: 0.1265 REMARK 3 S31: 0.0332 S32: -0.0677 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1747 19.1966 -14.2415 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.3286 REMARK 3 T33: 0.3836 T12: 0.0282 REMARK 3 T13: 0.0016 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.7989 L22: 1.0140 REMARK 3 L33: 0.5462 L12: 0.0136 REMARK 3 L13: -0.0670 L23: -0.0649 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.2472 S13: -0.0234 REMARK 3 S21: -0.1738 S22: 0.0280 S23: 0.0236 REMARK 3 S31: 0.0141 S32: -0.1608 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.4313 -1.5091 20.1032 REMARK 3 T TENSOR REMARK 3 T11: 0.3695 T22: 0.3962 REMARK 3 T33: 0.2823 T12: 0.0091 REMARK 3 T13: -0.0157 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 0.5680 L22: 0.3705 REMARK 3 L33: 0.7769 L12: -0.0964 REMARK 3 L13: -0.2644 L23: 0.5375 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: -0.0062 S13: 0.0476 REMARK 3 S21: 0.0462 S22: 0.0797 S23: -0.0717 REMARK 3 S31: 0.1527 S32: 0.2907 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.8768 2.8720 16.4642 REMARK 3 T TENSOR REMARK 3 T11: 0.3174 T22: 0.3059 REMARK 3 T33: 0.2473 T12: -0.0310 REMARK 3 T13: -0.0076 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 1.3968 L22: 0.5436 REMARK 3 L33: 0.8557 L12: -0.8260 REMARK 3 L13: -0.3267 L23: 0.3829 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: 0.1953 S13: 0.0856 REMARK 3 S21: -0.0659 S22: -0.0084 S23: 0.0567 REMARK 3 S31: 0.0652 S32: 0.0358 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19697 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1GP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOR DIFFUSION AT 291K REMARK 280 USING 2 MICROLITER DROPS CONTAINING EQUAL VOLUMES OF PROTEIN REMARK 280 CONCENTRATE AND A PRECIPITANT COCKTAIL CONTAINING 20% (W/V) PEG- REMARK 280 8000, 0.1 M MES, 0.3 M CA(OAC)2, PH 6.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.60950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.27700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.60950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.27700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLN A -1 REMARK 465 ASP A 0 REMARK 465 PRO A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 PHE A 10 REMARK 465 SER A 11 REMARK 465 ASN A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 TYR A 344 REMARK 465 PHE A 345 REMARK 465 PHE A 346 REMARK 465 ARG A 347 REMARK 465 LYS A 348 REMARK 465 ALA A 349 REMARK 465 HIS A 350 REMARK 465 ASP A 351 REMARK 465 GLY A 352 REMARK 465 LYS A 353 REMARK 465 LYS A 354 REMARK 465 THR A 355 REMARK 465 VAL A 356 REMARK 465 ASP A 357 REMARK 465 TYR A 358 REMARK 465 ALA A 359 REMARK 465 LYS A 360 REMARK 465 ILE A 361 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 GLN B -1 REMARK 465 ASP B 0 REMARK 465 PRO B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 THR B 7 REMARK 465 THR B 8 REMARK 465 GLN B 9 REMARK 465 PHE B 10 REMARK 465 SER B 11 REMARK 465 ASN B 12 REMARK 465 PRO B 13 REMARK 465 ALA B 14 REMARK 465 ALA B 142 REMARK 465 GLU B 143 REMARK 465 ASN B 197 REMARK 465 VAL B 198 REMARK 465 LYS B 199 REMARK 465 GLU B 200 REMARK 465 PHE B 345 REMARK 465 PHE B 346 REMARK 465 ARG B 347 REMARK 465 LYS B 348 REMARK 465 ALA B 349 REMARK 465 HIS B 350 REMARK 465 ASP B 351 REMARK 465 GLY B 352 REMARK 465 LYS B 353 REMARK 465 LYS B 354 REMARK 465 THR B 355 REMARK 465 VAL B 356 REMARK 465 ASP B 357 REMARK 465 TYR B 358 REMARK 465 ALA B 359 REMARK 465 LYS B 360 REMARK 465 ILE B 361 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 THR A 58 OG1 CG2 REMARK 470 ASP A 59 CG OD1 OD2 REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 ASP B 168 CG OD1 OD2 REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LEU B 201 CG CD1 CD2 REMARK 470 ASP B 227 CG OD1 OD2 REMARK 470 GLU B 329 CG CD OE1 OE2 REMARK 470 TYR B 344 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 92 O HOH B 501 2.01 REMARK 500 N ALA A 106 O HOH A 501 2.05 REMARK 500 OE2 GLU A 84 O HOH A 502 2.11 REMARK 500 NZ LYS A 194 OH TYR A 288 2.14 REMARK 500 OE2 GLU A 15 O HOH A 503 2.14 REMARK 500 OE2 GLU B 118 NZ LYS B 121 2.16 REMARK 500 OE1 GLN A 41 O HOH A 504 2.17 REMARK 500 O ASP A 102 O HOH A 501 2.18 REMARK 500 NE ARG A 303 O HOH A 505 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 201 OE2 GLU B 203 4555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 80 CA - CB - SG ANGL. DEV. = -14.8 DEGREES REMARK 500 LYS A 194 CD - CE - NZ ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 21 -65.02 -90.47 REMARK 500 ASN A 56 -166.32 -109.19 REMARK 500 THR A 58 4.68 59.70 REMARK 500 ASP A 59 -32.90 -147.72 REMARK 500 PRO A 70 -83.93 -51.29 REMARK 500 ASP A 71 98.78 -32.99 REMARK 500 ASN A 93 79.63 -106.57 REMARK 500 SER A 137 87.93 43.59 REMARK 500 CYS A 170 22.22 -155.08 REMARK 500 TYR A 191 -96.07 -72.20 REMARK 500 LEU A 192 -45.03 -0.10 REMARK 500 LYS A 194 -82.80 -15.21 REMARK 500 THR A 242 -78.23 -104.63 REMARK 500 ILE A 243 111.56 94.48 REMARK 500 ASP A 247 -159.84 -90.30 REMARK 500 ASN A 275 -82.06 -117.05 REMARK 500 ILE A 276 148.13 157.12 REMARK 500 VAL B 21 -64.67 -91.01 REMARK 500 ASP B 59 19.17 59.40 REMARK 500 ASP B 71 94.81 -69.82 REMARK 500 SER B 139 119.77 -169.61 REMARK 500 CYS B 170 20.50 -153.28 REMARK 500 ASN B 225 71.72 53.91 REMARK 500 VAL B 232 -66.70 -139.66 REMARK 500 ASP B 247 -157.95 -89.00 REMARK 500 ALA B 269 167.51 121.75 REMARK 500 LYS B 343 -122.08 -87.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 400 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 237 OD1 REMARK 620 2 ASP A 237 OD2 49.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 400 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 237 OD1 REMARK 620 2 ASP B 237 OD2 48.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 400 DBREF 4XAE A 2 361 UNP Q9LHN8 F6H1_ARATH 2 361 DBREF 4XAE B 2 361 UNP Q9LHN8 F6H1_ARATH 2 361 SEQADV 4XAE GLY A -11 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE SER A -10 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE SER A -9 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS A -8 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS A -7 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS A -6 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS A -5 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS A -4 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS A -3 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE SER A -2 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE GLN A -1 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE ASP A 0 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE PRO A 1 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE GLY B -11 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE SER B -10 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE SER B -9 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS B -8 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS B -7 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS B -6 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS B -5 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS B -4 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE HIS B -3 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE SER B -2 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE GLN B -1 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE ASP B 0 UNP Q9LHN8 EXPRESSION TAG SEQADV 4XAE PRO B 1 UNP Q9LHN8 EXPRESSION TAG SEQRES 1 A 373 GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP PRO SEQRES 2 A 373 ALA PRO THR LEU LEU THR THR GLN PHE SER ASN PRO ALA SEQRES 3 A 373 GLU VAL THR ASP PHE VAL VAL TYR LYS GLY ASN GLY VAL SEQRES 4 A 373 LYS GLY LEU SER GLU THR GLY ILE LYS ALA LEU PRO GLU SEQRES 5 A 373 GLN TYR ILE GLN PRO LEU GLU GLU ARG LEU ILE ASN LYS SEQRES 6 A 373 PHE VAL ASN GLU THR ASP GLU ALA ILE PRO VAL ILE ASP SEQRES 7 A 373 MSE SER ASN PRO ASP GLU ASP ARG VAL ALA GLU ALA VAL SEQRES 8 A 373 CYS ASP ALA ALA GLU LYS TRP GLY PHE PHE GLN VAL ILE SEQRES 9 A 373 ASN HIS GLY VAL PRO LEU GLU VAL LEU ASP ASP VAL LYS SEQRES 10 A 373 ALA ALA THR HIS LYS PHE PHE ASN LEU PRO VAL GLU GLU SEQRES 11 A 373 LYS ARG LYS PHE THR LYS GLU ASN SER LEU SER THR THR SEQRES 12 A 373 VAL ARG PHE GLY THR SER PHE SER PRO LEU ALA GLU GLN SEQRES 13 A 373 ALA LEU GLU TRP LYS ASP TYR LEU SER LEU PHE PHE VAL SEQRES 14 A 373 SER GLU ALA GLU ALA GLU GLN PHE TRP PRO ASP ILE CYS SEQRES 15 A 373 ARG ASN GLU THR LEU GLU TYR ILE ASN LYS SER LYS LYS SEQRES 16 A 373 MSE VAL ARG ARG LEU LEU GLU TYR LEU GLY LYS ASN LEU SEQRES 17 A 373 ASN VAL LYS GLU LEU ASP GLU THR LYS GLU SER LEU PHE SEQRES 18 A 373 MSE GLY SER ILE ARG VAL ASN LEU ASN TYR TYR PRO ILE SEQRES 19 A 373 CYS PRO ASN PRO ASP LEU THR VAL GLY VAL GLY ARG HIS SEQRES 20 A 373 SER ASP VAL SER SER LEU THR ILE LEU LEU GLN ASP GLN SEQRES 21 A 373 ILE GLY GLY LEU HIS VAL ARG SER LEU ALA SER GLY ASN SEQRES 22 A 373 TRP VAL HIS VAL PRO PRO VAL ALA GLY SER PHE VAL ILE SEQRES 23 A 373 ASN ILE GLY ASP ALA MSE GLN ILE MSE SER ASN GLY LEU SEQRES 24 A 373 TYR LYS SER VAL GLU HIS ARG VAL LEU ALA ASN GLY TYR SEQRES 25 A 373 ASN ASN ARG ILE SER VAL PRO ILE PHE VAL ASN PRO LYS SEQRES 26 A 373 PRO GLU SER VAL ILE GLY PRO LEU PRO GLU VAL ILE ALA SEQRES 27 A 373 ASN GLY GLU GLU PRO ILE TYR ARG ASP VAL LEU TYR SER SEQRES 28 A 373 ASP TYR VAL LYS TYR PHE PHE ARG LYS ALA HIS ASP GLY SEQRES 29 A 373 LYS LYS THR VAL ASP TYR ALA LYS ILE SEQRES 1 B 373 GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP PRO SEQRES 2 B 373 ALA PRO THR LEU LEU THR THR GLN PHE SER ASN PRO ALA SEQRES 3 B 373 GLU VAL THR ASP PHE VAL VAL TYR LYS GLY ASN GLY VAL SEQRES 4 B 373 LYS GLY LEU SER GLU THR GLY ILE LYS ALA LEU PRO GLU SEQRES 5 B 373 GLN TYR ILE GLN PRO LEU GLU GLU ARG LEU ILE ASN LYS SEQRES 6 B 373 PHE VAL ASN GLU THR ASP GLU ALA ILE PRO VAL ILE ASP SEQRES 7 B 373 MSE SER ASN PRO ASP GLU ASP ARG VAL ALA GLU ALA VAL SEQRES 8 B 373 CYS ASP ALA ALA GLU LYS TRP GLY PHE PHE GLN VAL ILE SEQRES 9 B 373 ASN HIS GLY VAL PRO LEU GLU VAL LEU ASP ASP VAL LYS SEQRES 10 B 373 ALA ALA THR HIS LYS PHE PHE ASN LEU PRO VAL GLU GLU SEQRES 11 B 373 LYS ARG LYS PHE THR LYS GLU ASN SER LEU SER THR THR SEQRES 12 B 373 VAL ARG PHE GLY THR SER PHE SER PRO LEU ALA GLU GLN SEQRES 13 B 373 ALA LEU GLU TRP LYS ASP TYR LEU SER LEU PHE PHE VAL SEQRES 14 B 373 SER GLU ALA GLU ALA GLU GLN PHE TRP PRO ASP ILE CYS SEQRES 15 B 373 ARG ASN GLU THR LEU GLU TYR ILE ASN LYS SER LYS LYS SEQRES 16 B 373 MSE VAL ARG ARG LEU LEU GLU TYR LEU GLY LYS ASN LEU SEQRES 17 B 373 ASN VAL LYS GLU LEU ASP GLU THR LYS GLU SER LEU PHE SEQRES 18 B 373 MSE GLY SER ILE ARG VAL ASN LEU ASN TYR TYR PRO ILE SEQRES 19 B 373 CYS PRO ASN PRO ASP LEU THR VAL GLY VAL GLY ARG HIS SEQRES 20 B 373 SER ASP VAL SER SER LEU THR ILE LEU LEU GLN ASP GLN SEQRES 21 B 373 ILE GLY GLY LEU HIS VAL ARG SER LEU ALA SER GLY ASN SEQRES 22 B 373 TRP VAL HIS VAL PRO PRO VAL ALA GLY SER PHE VAL ILE SEQRES 23 B 373 ASN ILE GLY ASP ALA MSE GLN ILE MSE SER ASN GLY LEU SEQRES 24 B 373 TYR LYS SER VAL GLU HIS ARG VAL LEU ALA ASN GLY TYR SEQRES 25 B 373 ASN ASN ARG ILE SER VAL PRO ILE PHE VAL ASN PRO LYS SEQRES 26 B 373 PRO GLU SER VAL ILE GLY PRO LEU PRO GLU VAL ILE ALA SEQRES 27 B 373 ASN GLY GLU GLU PRO ILE TYR ARG ASP VAL LEU TYR SER SEQRES 28 B 373 ASP TYR VAL LYS TYR PHE PHE ARG LYS ALA HIS ASP GLY SEQRES 29 B 373 LYS LYS THR VAL ASP TYR ALA LYS ILE MODRES 4XAE MSE A 67 MET MODIFIED RESIDUE MODRES 4XAE MSE A 184 MET MODIFIED RESIDUE MODRES 4XAE MSE A 210 MET MODIFIED RESIDUE MODRES 4XAE MSE A 280 MET MODIFIED RESIDUE MODRES 4XAE MSE A 283 MET MODIFIED RESIDUE MODRES 4XAE MSE B 67 MET MODIFIED RESIDUE MODRES 4XAE MSE B 184 MET MODIFIED RESIDUE MODRES 4XAE MSE B 210 MET MODIFIED RESIDUE MODRES 4XAE MSE B 280 MET MODIFIED RESIDUE MODRES 4XAE MSE B 283 MET MODIFIED RESIDUE HET MSE A 67 8 HET MSE A 184 8 HET MSE A 210 8 HET MSE A 280 8 HET MSE A 283 8 HET MSE B 67 8 HET MSE B 184 8 HET MSE B 210 8 HET MSE B 280 8 HET MSE B 283 8 HET NA A 400 1 HET NA B 400 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *28(H2 O) HELIX 1 AA1 VAL A 16 VAL A 21 1 6 HELIX 2 AA2 ASN A 25 GLU A 32 1 8 HELIX 3 AA3 PRO A 39 ILE A 43 5 5 HELIX 4 AA4 PRO A 45 LYS A 53 1 9 HELIX 5 AA5 ASP A 71 TRP A 86 1 16 HELIX 6 AA6 PRO A 97 ASN A 113 1 17 HELIX 7 AA7 PRO A 115 ARG A 120 1 6 HELIX 8 AA8 LYS A 121 THR A 123 5 3 HELIX 9 AA9 GLU A 159 TRP A 166 1 8 HELIX 10 AB1 CYS A 170 GLY A 193 1 24 HELIX 11 AB2 THR A 204 MSE A 210 1 7 HELIX 12 AB3 GLY A 277 SER A 284 1 8 HELIX 13 AB4 LEU A 321 ALA A 326 1 6 HELIX 14 AB5 TYR A 338 LYS A 343 1 6 HELIX 15 AB6 VAL B 16 VAL B 21 1 6 HELIX 16 AB7 ASN B 25 GLU B 32 1 8 HELIX 17 AB8 PRO B 45 LYS B 53 1 9 HELIX 18 AB9 ASP B 71 TRP B 86 1 16 HELIX 19 AC1 GLU B 99 ASN B 113 1 15 HELIX 20 AC2 PRO B 115 ARG B 120 1 6 HELIX 21 AC3 LYS B 121 THR B 123 5 3 HELIX 22 AC4 GLU B 159 TRP B 166 1 8 HELIX 23 AC5 CYS B 170 LEU B 196 1 27 HELIX 24 AC6 THR B 204 MSE B 210 1 7 HELIX 25 AC7 GLY B 277 SER B 284 1 8 HELIX 26 AC8 TYR B 338 LYS B 343 1 6 SHEET 1 AA1 3 VAL A 64 ILE A 65 0 SHEET 2 AA1 3 PHE A 89 VAL A 91 1 O GLN A 90 N ILE A 65 SHEET 3 AA1 3 PHE A 272 ILE A 274 -1 O ILE A 274 N PHE A 89 SHEET 1 AA2 5 VAL A 132 THR A 136 0 SHEET 2 AA2 5 ASP A 150 PHE A 155 -1 O SER A 153 N ARG A 133 SHEET 3 AA2 5 SER A 212 TYR A 220 -1 O VAL A 215 N LEU A 154 SHEET 4 AA2 5 ARG A 303 ASN A 311 -1 O PHE A 309 N ARG A 214 SHEET 5 AA2 5 LEU A 244 GLN A 246 -1 N LEU A 245 O VAL A 306 SHEET 1 AA3 4 VAL A 232 HIS A 235 0 SHEET 2 AA3 4 HIS A 293 VAL A 295 -1 O HIS A 293 N HIS A 235 SHEET 3 AA3 4 LEU A 252 ARG A 255 -1 N HIS A 253 O ARG A 294 SHEET 4 AA3 4 TRP A 262 VAL A 265 -1 O VAL A 263 N VAL A 254 SHEET 1 AA4 2 VAL A 317 ILE A 318 0 SHEET 2 AA4 2 VAL A 336 LEU A 337 -1 O VAL A 336 N ILE A 318 SHEET 1 AA5 8 VAL B 64 ILE B 65 0 SHEET 2 AA5 8 PHE B 88 VAL B 91 1 O GLN B 90 N ILE B 65 SHEET 3 AA5 8 PHE B 272 ILE B 276 -1 O ILE B 274 N PHE B 89 SHEET 4 AA5 8 LEU B 241 GLN B 246 -1 N LEU B 244 O VAL B 273 SHEET 5 AA5 8 ARG B 303 ASN B 311 -1 O ILE B 308 N ILE B 243 SHEET 6 AA5 8 SER B 212 TYR B 220 -1 N ARG B 214 O PHE B 309 SHEET 7 AA5 8 ASP B 150 PHE B 156 -1 N ASP B 150 O TYR B 219 SHEET 8 AA5 8 VAL B 132 THR B 136 -1 N ARG B 133 O SER B 153 SHEET 1 AA6 3 TRP B 262 HIS B 264 0 SHEET 2 AA6 3 LEU B 252 ARG B 255 -1 N VAL B 254 O VAL B 263 SHEET 3 AA6 3 HIS B 293 VAL B 295 -1 O ARG B 294 N HIS B 253 SHEET 1 AA7 2 VAL B 317 ILE B 318 0 SHEET 2 AA7 2 VAL B 336 LEU B 337 -1 O VAL B 336 N ILE B 318 LINK C ASP A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N SER A 68 1555 1555 1.33 LINK C LYS A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N VAL A 185 1555 1555 1.33 LINK C PHE A 209 N MSE A 210 1555 1555 1.33 LINK C MSE A 210 N GLY A 211 1555 1555 1.33 LINK C ALA A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N GLN A 281 1555 1555 1.33 LINK C ILE A 282 N MSE A 283 1555 1555 1.33 LINK C MSE A 283 N SER A 284 1555 1555 1.33 LINK C ASP B 66 N MSE B 67 1555 1555 1.33 LINK C MSE B 67 N SER B 68 1555 1555 1.33 LINK C LYS B 183 N MSE B 184 1555 1555 1.33 LINK C MSE B 184 N VAL B 185 1555 1555 1.33 LINK C PHE B 209 N MSE B 210 1555 1555 1.33 LINK C MSE B 210 N GLY B 211 1555 1555 1.33 LINK C ALA B 279 N MSE B 280 1555 1555 1.33 LINK C MSE B 280 N GLN B 281 1555 1555 1.33 LINK C ILE B 282 N MSE B 283 1555 1555 1.33 LINK C MSE B 283 N SER B 284 1555 1555 1.33 LINK OD1 ASP A 237 NA NA A 400 1555 1555 2.51 LINK OD2 ASP A 237 NA NA A 400 1555 1555 2.72 LINK OD1 ASP B 237 NA NA B 400 1555 1555 2.62 LINK OD2 ASP B 237 NA NA B 400 1555 1555 2.74 SITE 1 AC1 3 HIS A 235 ASP A 237 HIS A 293 SITE 1 AC2 3 HIS B 235 ASP B 237 HIS B 293 CRYST1 193.219 54.554 78.815 90.00 111.54 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005175 0.000000 0.002043 0.00000 SCALE2 0.000000 0.018330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013641 0.00000