HEADER HYDROLASE 14-DEC-14 4XAF TITLE CYCLES OF DESTABILIZATION AND REPAIR UNDERLIE EVOLUTIONARY TRANSITIONS TITLE 2 IN ENZYMES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE VARIANT PTE-R1; COMPND 3 CHAIN: A, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DYNAMICS, EVOLUTION, PHOSPHOTRIESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.JACKSON,E.CAMPBELL,M.KALTENBACH,N.TOKURIKI REVDAT 6 15-NOV-23 4XAF 1 REMARK REVDAT 5 27-SEP-23 4XAF 1 REMARK LINK REVDAT 4 26-OCT-16 4XAF 1 JRNL REVDAT 3 28-SEP-16 4XAF 1 JRNL REVDAT 2 07-SEP-16 4XAF 1 JRNL REVDAT 1 16-DEC-15 4XAF 0 JRNL AUTH E.CAMPBELL,M.KALTENBACH,G.J.CORREY,P.D.CARR,B.T.POREBSKI, JRNL AUTH 2 E.K.LIVINGSTONE,L.AFRIAT-JURNOU,A.M.BUCKLE,M.WEIK, JRNL AUTH 3 F.HOLLFELDER,N.TOKURIKI,C.J.JACKSON JRNL TITL THE ROLE OF PROTEIN DYNAMICS IN THE EVOLUTION OF NEW ENZYME JRNL TITL 2 FUNCTION. JRNL REF NAT.CHEM.BIOL. V. 12 944 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 27618189 JRNL DOI 10.1038/NCHEMBIO.2175 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 77419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 3995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7146 - 5.0953 1.00 2753 124 0.1615 0.1794 REMARK 3 2 5.0953 - 4.0461 1.00 2591 157 0.1375 0.1664 REMARK 3 3 4.0461 - 3.5352 1.00 2628 105 0.1438 0.1740 REMARK 3 4 3.5352 - 3.2122 1.00 2583 129 0.1632 0.1980 REMARK 3 5 3.2122 - 2.9821 1.00 2525 191 0.1683 0.1987 REMARK 3 6 2.9821 - 2.8063 1.00 2545 119 0.1693 0.2256 REMARK 3 7 2.8063 - 2.6658 1.00 2528 153 0.1692 0.1983 REMARK 3 8 2.6658 - 2.5498 1.00 2523 155 0.1770 0.2263 REMARK 3 9 2.5498 - 2.4517 1.00 2499 160 0.1809 0.2204 REMARK 3 10 2.4517 - 2.3671 1.00 2543 112 0.1793 0.2261 REMARK 3 11 2.3671 - 2.2931 1.00 2565 137 0.1878 0.2437 REMARK 3 12 2.2931 - 2.2276 1.00 2506 139 0.1906 0.2541 REMARK 3 13 2.2276 - 2.1689 1.00 2544 121 0.1883 0.2357 REMARK 3 14 2.1689 - 2.1160 1.00 2473 184 0.1957 0.2525 REMARK 3 15 2.1160 - 2.0679 1.00 2500 153 0.2055 0.2279 REMARK 3 16 2.0679 - 2.0239 1.00 2496 131 0.2050 0.2779 REMARK 3 17 2.0239 - 1.9834 1.00 2541 119 0.2050 0.2646 REMARK 3 18 1.9834 - 1.9460 1.00 2488 146 0.2214 0.2540 REMARK 3 19 1.9460 - 1.9112 1.00 2504 164 0.2319 0.2451 REMARK 3 20 1.9112 - 1.8788 1.00 2488 145 0.2182 0.2591 REMARK 3 21 1.8788 - 1.8485 1.00 2497 153 0.2177 0.3212 REMARK 3 22 1.8485 - 1.8201 1.00 2497 143 0.2165 0.2412 REMARK 3 23 1.8201 - 1.7933 1.00 2542 117 0.2263 0.2612 REMARK 3 24 1.7933 - 1.7681 1.00 2505 127 0.2327 0.2934 REMARK 3 25 1.7681 - 1.7442 1.00 2498 119 0.2330 0.2951 REMARK 3 26 1.7442 - 1.7215 1.00 2497 144 0.2452 0.2724 REMARK 3 27 1.7215 - 1.7000 1.00 2531 125 0.2488 0.3197 REMARK 3 28 1.7000 - 1.6795 1.00 2508 109 0.2492 0.2826 REMARK 3 29 1.6795 - 1.6600 1.00 2526 114 0.2604 0.3092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 5548 REMARK 3 ANGLE : 1.652 7581 REMARK 3 CHIRALITY : 0.079 879 REMARK 3 PLANARITY : 0.009 994 REMARK 3 DIHEDRAL : 14.869 2077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77440 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 35.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07831 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GY0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA-CACODYLATE, 30% 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.84350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.86650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.84350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.86650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -156.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 SER A 365 REMARK 465 MET G 33 REMARK 465 ARG G 363 REMARK 465 ALA G 364 REMARK 465 SER G 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH G 668 O HOH G 670 2.06 REMARK 500 OD2 ASP G 253 O HOH G 649 2.08 REMARK 500 ND2 ASN A 38 O HOH A 2634 2.11 REMARK 500 O HOH G 677 O HOH G 680 2.14 REMARK 500 O HOH G 574 O HOH G 612 2.16 REMARK 500 OD2 ASP A 253 O HOH A 2617 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG G 225 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG G 225 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -144.99 -138.73 REMARK 500 TRP A 69 59.29 -148.68 REMARK 500 ARG A 108 125.56 -39.22 REMARK 500 THR A 128 -166.71 -112.04 REMARK 500 TRP A 131 -149.69 -95.57 REMARK 500 GLU A 159 -133.89 54.42 REMARK 500 VAL A 176 114.99 96.87 REMARK 500 VAL A 176 114.99 98.88 REMARK 500 ALA A 259 -91.31 54.71 REMARK 500 ILE A 260 111.13 64.18 REMARK 500 LEU A 262 71.41 -105.43 REMARK 500 ALA A 266 33.08 -94.66 REMARK 500 SER A 267 4.49 -163.87 REMARK 500 LEU A 272 -152.42 -115.22 REMARK 500 SER A 308 44.56 -83.81 REMARK 500 SER G 61 -144.63 -143.88 REMARK 500 TRP G 69 58.59 -146.11 REMARK 500 THR G 128 -167.23 -113.23 REMARK 500 TRP G 131 -149.34 -95.93 REMARK 500 GLU G 159 -131.94 52.48 REMARK 500 THR G 173 79.61 -110.66 REMARK 500 SER G 308 42.11 -90.53 REMARK 500 SER G 308 43.69 -91.90 REMARK 500 VAL G 351 -59.16 -121.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 117.7 REMARK 620 3 KCX A 169 OQ2 90.3 90.8 REMARK 620 4 ASP A 301 OD1 84.8 94.6 174.0 REMARK 620 5 CAC A2403 O1 124.1 117.8 94.9 84.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ1 REMARK 620 2 HIS A 201 ND1 97.8 REMARK 620 3 HIS A 230 NE2 109.1 91.2 REMARK 620 4 CAC A2403 O2 100.8 100.2 146.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 55 NE2 REMARK 620 2 HIS G 57 NE2 115.1 REMARK 620 3 KCX G 169 OQ2 92.3 89.8 REMARK 620 4 ASP G 301 OD1 81.7 94.8 173.6 REMARK 620 5 CAC G 401 O1 123.4 121.3 92.7 88.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX G 169 OQ1 REMARK 620 2 HIS G 201 ND1 95.3 REMARK 620 3 HIS G 230 NE2 107.7 105.2 REMARK 620 4 CAC G 401 O2 104.8 92.7 141.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 2404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC G 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD G 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PBE RELATED DB: PDB REMARK 900 RELATED ID: 4PBF RELATED DB: PDB REMARK 900 RELATED ID: 4PCN RELATED DB: PDB REMARK 900 RELATED ID: 4PCP RELATED DB: PDB REMARK 900 RELATED ID: 4XAG RELATED DB: PDB REMARK 900 RELATED ID: 4XAY RELATED DB: PDB REMARK 900 RELATED ID: 4XAZ RELATED DB: PDB REMARK 900 RELATED ID: 4XD3 RELATED DB: PDB REMARK 900 RELATED ID: 4XD4 RELATED DB: PDB REMARK 900 RELATED ID: 4XD5 RELATED DB: PDB REMARK 900 RELATED ID: 4XD6 RELATED DB: PDB DBREF1 4XAF A 33 365 UNP A0A060GZX0_BREDI DBREF2 4XAF A A0A060GZX0 1 333 DBREF1 4XAF G 33 365 UNP A0A060GZX0_BREDI DBREF2 4XAF G A0A060GZX0 1 333 SEQRES 1 A 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 A 333 ILE SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 A 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 A 333 PHE PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL SEQRES 5 A 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 A 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 A 333 SER LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 A 333 ILE VAL ALA ALA THR GLY LEU TRP LEU ASP PRO PRO LEU SEQRES 9 A 333 SER MET ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 A 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 A 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS SEQRES 12 A 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 A 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL THR THR HIS SEQRES 14 A 333 THR ALA ALA SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 A 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 A 333 ILE GLY HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU SEQRES 17 A 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 A 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 A 333 SER ALA SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR SEQRES 20 A 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 A 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 A 333 PHE SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP SEQRES 23 A 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 A 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 A 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 A 333 LEU SER PRO THR LEU ARG ALA SER SEQRES 1 G 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 G 333 ILE SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 G 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 G 333 PHE PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL SEQRES 5 G 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 G 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 G 333 SER LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 G 333 ILE VAL ALA ALA THR GLY LEU TRP LEU ASP PRO PRO LEU SEQRES 9 G 333 SER MET ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 G 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 G 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS SEQRES 12 G 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 G 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL THR THR HIS SEQRES 14 G 333 THR ALA ALA SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 G 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 G 333 ILE GLY HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU SEQRES 17 G 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 G 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 G 333 SER ALA SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR SEQRES 20 G 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 G 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 G 333 PHE SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP SEQRES 23 G 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 G 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 G 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 G 333 LEU SER PRO THR LEU ARG ALA SER MODRES 4XAF KCX A 169 LYS MODIFIED RESIDUE MODRES 4XAF KCX G 169 LYS MODIFIED RESIDUE HET KCX A 169 12 HET KCX G 169 12 HET ZN A2401 1 HET ZN A2402 1 HET CAC A2403 5 HET MPD A2404 8 HET CAC G 401 5 HET ZN G 402 1 HET ZN G 403 1 HET MPD G 404 8 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM CAC CACODYLATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN CAC DIMETHYLARSINATE FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CAC 2(C2 H6 AS O2 1-) FORMUL 6 MPD 2(C6 H14 O2) FORMUL 11 HOH *333(H2 O) HELIX 1 AA1 ILE A 46 GLY A 50 1 5 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 LEU A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 ALA A 203 ARG A 207 5 5 HELIX 11 AB2 GLY A 208 GLU A 219 1 12 HELIX 12 AB3 SER A 222 SER A 224 5 3 HELIX 13 AB4 HIS A 230 THR A 234 5 5 HELIX 14 AB5 ASP A 236 ARG A 246 1 11 HELIX 15 AB6 SER A 276 GLN A 290 1 15 HELIX 16 AB7 TYR A 292 LYS A 294 5 3 HELIX 17 AB8 ASN A 312 ASN A 321 1 10 HELIX 18 AB9 ASP A 323 MET A 325 5 3 HELIX 19 AC1 ALA A 326 ARG A 331 1 6 HELIX 20 AC2 ARG A 331 LYS A 339 1 9 HELIX 21 AC3 PRO A 342 VAL A 351 1 10 HELIX 22 AC4 VAL A 351 SER A 359 1 9 HELIX 23 AC5 ILE G 46 GLY G 50 1 5 HELIX 24 AC6 GLY G 64 TRP G 69 1 6 HELIX 25 AC7 PRO G 70 GLY G 74 5 5 HELIX 26 AC8 SER G 75 ALA G 93 1 19 HELIX 27 AC9 THR G 103 GLY G 107 5 5 HELIX 28 AD1 ASP G 109 ASP G 121 1 13 HELIX 29 AD2 PRO G 135 LEU G 140 1 6 HELIX 30 AD3 SER G 142 TYR G 156 1 15 HELIX 31 AD4 THR G 177 GLY G 195 1 19 HELIX 32 AD5 ALA G 203 ARG G 207 5 5 HELIX 33 AD6 GLY G 208 GLU G 219 1 12 HELIX 34 AD7 SER G 222 SER G 224 5 3 HELIX 35 AD8 HIS G 230 THR G 234 5 5 HELIX 36 AD9 ASP G 236 ARG G 246 1 11 HELIX 37 AE1 ASN G 265 GLY G 273 1 9 HELIX 38 AE2 SER G 276 GLN G 290 1 15 HELIX 39 AE3 TYR G 292 LYS G 294 5 3 HELIX 40 AE4 ASN G 312 ASN G 321 1 10 HELIX 41 AE5 ASP G 323 MET G 325 5 3 HELIX 42 AE6 ALA G 326 ARG G 331 1 6 HELIX 43 AE7 ARG G 331 LYS G 339 1 9 HELIX 44 AE8 PRO G 342 VAL G 351 1 10 HELIX 45 AE9 VAL G 351 SER G 359 1 9 SHEET 1 AA1 2 ARG A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 LEU A 130 0 SHEET 2 AA4 6 ILE A 167 ALA A 171 1 O KCX A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 GLY A 229 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA5 2 ARG G 36 THR G 39 0 SHEET 2 AA5 2 GLY G 42 THR G 45 -1 O ILE G 44 N ILE G 37 SHEET 1 AA6 3 THR G 52 GLU G 56 0 SHEET 2 AA6 3 THR G 97 ASP G 100 1 O VAL G 99 N GLU G 56 SHEET 3 AA6 3 HIS G 123 VAL G 125 1 O VAL G 125 N ASP G 100 SHEET 1 AA7 2 CYS G 59 GLY G 60 0 SHEET 2 AA7 2 GLY G 305 PHE G 306 1 O GLY G 305 N GLY G 60 SHEET 1 AA8 6 ALA G 127 LEU G 130 0 SHEET 2 AA8 6 ILE G 167 ALA G 171 1 O KCX G 169 N THR G 128 SHEET 3 AA8 6 VAL G 198 HIS G 201 1 O THR G 199 N ILE G 168 SHEET 4 AA8 6 VAL G 226 GLY G 229 1 O CYS G 227 N VAL G 198 SHEET 5 AA8 6 LEU G 249 LEU G 252 1 O LEU G 249 N ILE G 228 SHEET 6 AA8 6 ILE G 296 VAL G 298 1 O LEU G 297 N LEU G 252 LINK C ILE A 168 N KCX A 169 1555 1555 1.33 LINK C KCX A 169 N VAL A 170 1555 1555 1.33 LINK C ILE G 168 N KCX G 169 1555 1555 1.34 LINK C KCX G 169 N VAL G 170 1555 1555 1.34 LINK NE2 HIS A 55 ZN ZN A2401 1555 1555 2.33 LINK NE2 HIS A 57 ZN ZN A2401 1555 1555 2.07 LINK OQ2 KCX A 169 ZN ZN A2401 1555 1555 2.27 LINK OQ1 KCX A 169 ZN ZN A2402 1555 1555 1.82 LINK ND1 HIS A 201 ZN ZN A2402 1555 1555 2.16 LINK NE2 HIS A 230 ZN ZN A2402 1555 1555 2.13 LINK OD1 ASP A 301 ZN ZN A2401 1555 1555 2.13 LINK ZN ZN A2401 O1 CAC A2403 1555 1555 1.98 LINK ZN ZN A2402 O2 CAC A2403 1555 1555 2.26 LINK NE2 HIS G 55 ZN ZN G 402 1555 1555 2.20 LINK NE2 HIS G 57 ZN ZN G 402 1555 1555 2.11 LINK OQ2 KCX G 169 ZN ZN G 402 1555 1555 2.17 LINK OQ1 KCX G 169 ZN ZN G 403 1555 1555 2.00 LINK ND1 HIS G 201 ZN ZN G 403 1555 1555 2.11 LINK NE2 HIS G 230 ZN ZN G 403 1555 1555 2.10 LINK OD1 ASP G 301 ZN ZN G 402 1555 1555 2.19 LINK O1 CAC G 401 ZN ZN G 402 1555 1555 1.92 LINK O2 CAC G 401 ZN ZN G 403 1555 1555 2.16 SITE 1 AC1 5 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC1 5 CAC A2403 SITE 1 AC2 5 KCX A 169 HIS A 201 HIS A 230 ARG A 254 SITE 2 AC2 5 CAC A2403 SITE 1 AC3 8 HIS A 57 TRP A 131 KCX A 169 HIS A 201 SITE 2 AC3 8 ARG A 254 ASP A 301 ZN A2401 ZN A2402 SITE 1 AC4 3 PHE A 51 ARG A 337 GLN A 343 SITE 1 AC5 11 HIS G 55 HIS G 57 TRP G 131 KCX G 169 SITE 2 AC5 11 HIS G 201 HIS G 230 ARG G 254 ASP G 301 SITE 3 AC5 11 ZN G 402 ZN G 403 HOH G 662 SITE 1 AC6 5 HIS G 55 HIS G 57 KCX G 169 ASP G 301 SITE 2 AC6 5 CAC G 401 SITE 1 AC7 5 KCX G 169 HIS G 201 HIS G 230 ARG G 254 SITE 2 AC7 5 CAC G 401 SITE 1 AC8 2 PHE G 51 GLN G 343 CRYST1 85.687 85.733 88.380 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011315 0.00000