HEADER TRANSCRIPTION REGULATOR 15-DEC-14 4XAX TITLE CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS CARD IN COMPLEX WITH THE TITLE 2 THERMUS AQUATICUS RNA POLYMERASE BETA1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA DOMAIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNAP SUBUNIT BETA,RNA POLYMERASE SUBUNIT BETA,TRANSCRIPTASE COMPND 5 SUBUNIT BETA,RNAP SUBUNIT BETA,RNA POLYMERASE SUBUNIT BETA, COMPND 6 TRANSCRIPTASE SUBUNIT BETA; COMPND 7 EC: 2.7.7.6; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: BETA1 DOMAIN (UNP RESIDUES 17-139 AND 334-395); COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CARD; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 GENE: RPOB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 9 DSM 579); SOURCE 10 ORGANISM_TAXID: 300852; SOURCE 11 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 12 GENE: TTHA0168; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR J.CHEN,B.BAE,E.A.CAMPBELL,S.A.DARST REVDAT 4 27-SEP-23 4XAX 1 REMARK REVDAT 3 22-NOV-17 4XAX 1 REMARK REVDAT 2 30-SEP-15 4XAX 1 REMARK REVDAT 1 16-SEP-15 4XAX 0 JRNL AUTH B.BAE,J.CHEN,E.DAVIS,K.LEON,S.A.DARST,E.A.CAMPBELL JRNL TITL CARD USES A MINOR GROOVE WEDGE MECHANISM TO STABILIZE THE JRNL TITL 2 RNA POLYMERASE OPEN PROMOTER COMPLEX. JRNL REF ELIFE V. 4 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26349034 JRNL DOI 10.7554/ELIFE.08505 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.2196 - 4.7952 0.95 2771 142 0.1286 0.1617 REMARK 3 2 4.7952 - 3.8123 0.95 2720 150 0.1257 0.1559 REMARK 3 3 3.8123 - 3.3323 0.95 2690 141 0.1684 0.1797 REMARK 3 4 3.3323 - 3.0284 0.95 2678 133 0.1906 0.2113 REMARK 3 5 3.0284 - 2.8118 0.95 2666 143 0.1942 0.2018 REMARK 3 6 2.8118 - 2.6463 0.95 2652 149 0.2158 0.2753 REMARK 3 7 2.6463 - 2.5140 0.95 2668 152 0.2321 0.2562 REMARK 3 8 2.5140 - 2.4047 0.95 2653 151 0.2519 0.2915 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4100 REMARK 3 OPERATOR: -K,-H,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2725 REMARK 3 ANGLE : 1.182 3677 REMARK 3 CHIRALITY : 0.045 403 REMARK 3 PLANARITY : 0.006 486 REMARK 3 DIHEDRAL : 17.020 1039 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22705 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.96100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4L5G, 3MLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, REMARK 280 ETHYLENE GYCOL, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 74.66050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.66050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.12800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 74.66050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.66050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.12800 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 74.66050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 74.66050 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.12800 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 74.66050 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 74.66050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.12800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 303 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 CYS A 83 SG REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 422 O HOH A 423 1.86 REMARK 500 OE2 GLU A 56 NE ARG A 356 1.92 REMARK 500 O TRP B 86 O HOH B 301 1.93 REMARK 500 ND2 ASN A 41 NZ LYS A 49 1.95 REMARK 500 O HOH A 419 O HOH A 420 1.96 REMARK 500 O HOH B 304 O HOH B 315 1.99 REMARK 500 O HOH B 328 O HOH B 332 2.06 REMARK 500 O HOH A 418 O HOH A 422 2.06 REMARK 500 N GLU B 3 O HOH B 342 2.07 REMARK 500 O VAL B 51 O HOH B 335 2.11 REMARK 500 NZ LYS A 109 OD1 ASP A 111 2.11 REMARK 500 O SER B 94 O HOH B 326 2.12 REMARK 500 O1 EDO B 202 O HOH B 302 2.13 REMARK 500 O GLY A 354 N GLU A 357 2.14 REMARK 500 O ILE B 96 O HOH B 323 2.15 REMARK 500 O1 EDO B 203 O1 EDO B 205 2.17 REMARK 500 O TYR B 15 O HOH B 349 2.17 REMARK 500 OD1 ASP A 342 NH1 ARG A 345 2.18 REMARK 500 O VAL B 31 O HOH B 337 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY B 30 OD1 ASP B 123 1554 1.62 REMARK 500 O HOH B 309 O HOH B 316 3555 1.87 REMARK 500 O HOH A 402 O HOH A 404 6455 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 61 N - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 GLY A 354 N - CA - C ANGL. DEV. = -29.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 36 -35.68 -35.54 REMARK 500 ASN A 41 69.16 -67.15 REMARK 500 ASP A 75 158.70 -44.70 REMARK 500 GLU A 85 26.45 -77.38 REMARK 500 ASP A 87 67.19 -67.28 REMARK 500 ILE A 128 63.54 -112.75 REMARK 500 THR A 335 -169.58 -100.22 REMARK 500 VAL A 355 -36.25 -35.91 REMARK 500 ALA B 53 98.53 -160.45 REMARK 500 VAL B 117 -75.63 -85.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 61 GLY A 62 149.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 343 DISTANCE = 6.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205 DBREF 4XAX A 17 139 UNP Q9KWU7 RPOB_THEAQ 17 139 DBREF 4XAX A 334 392 UNP Q9KWU7 RPOB_THEAQ 334 392 DBREF 4XAX B 3 160 UNP Q5SLX5 Q5SLX5_THET8 3 160 SEQADV 4XAX GLY A 332 UNP Q9KWU7 LINKER SEQADV 4XAX GLY A 333 UNP Q9KWU7 LINKER SEQRES 1 A 184 PRO LEU THR GLU ILE GLN VAL GLU SER TYR LYS LYS ALA SEQRES 2 A 184 LEU GLN ALA ASP VAL PRO PRO GLU LYS ARG GLU ASN VAL SEQRES 3 A 184 GLY ILE GLN ALA ALA PHE LYS GLU THR PHE PRO ILE GLU SEQRES 4 A 184 GLU GLY ASP LYS GLY LYS GLY GLY LEU VAL LEU ASP PHE SEQRES 5 A 184 LEU GLU TYR ARG ILE GLY ASP PRO PRO PHE SER GLN ASP SEQRES 6 A 184 GLU CYS ARG GLU LYS ASP LEU THR TYR GLN ALA PRO LEU SEQRES 7 A 184 TYR ALA ARG LEU GLN LEU ILE HIS LYS ASP THR GLY LEU SEQRES 8 A 184 ILE LYS GLU ASP GLU VAL PHE LEU GLY HIS LEU PRO LEU SEQRES 9 A 184 MET THR GLU ASP GLY SER PHE ILE ILE ASN GLY ALA ASP SEQRES 10 A 184 ARG VAL ILE VAL SER GLN GLY GLY ARG THR VAL GLY GLU SEQRES 11 A 184 LEU MET ALA ASP GLN PHE ARG VAL GLY LEU ALA ARG LEU SEQRES 12 A 184 ALA ARG GLY VAL ARG GLU ARG MET VAL MET GLY SER PRO SEQRES 13 A 184 ASP THR LEU THR PRO ALA LYS LEU VAL ASN SER ARG PRO SEQRES 14 A 184 LEU GLU ALA ALA LEU ARG GLU PHE PHE SER ARG SER GLN SEQRES 15 A 184 LEU SER SEQRES 1 B 158 GLU PHE ARG PRO GLY ASP LYS VAL VAL LEU PRO PRO TYR SEQRES 2 B 158 GLY VAL GLY VAL VAL ALA GLY ILE ALA GLN ARG SER VAL SEQRES 3 B 158 SER GLY VAL SER ARG ALA TYR TYR GLN VAL ASP PHE PRO SEQRES 4 B 158 GLY SER ARG SER LYS ALA TYR VAL PRO VAL GLU ALA PRO SEQRES 5 B 158 HIS SER VAL GLY LEU ARG LYS ALA LEU ALA PRO GLU GLU SEQRES 6 B 158 VAL PRO VAL ILE LEU ASP LEU LEU LYS ASN GLY ARG MET SEQRES 7 B 158 PRO LEU PRO LYS GLN TRP ALA ALA ARG HIS ARG LYS THR SEQRES 8 B 158 SER GLU ILE LEU ALA ASP GLY ASN PRO TYR ARG ILE ALA SEQRES 9 B 158 GLN MET ALA GLY GLN LEU ARG ALA TRP GLU VAL GLU ARG SEQRES 10 B 158 GLY LEU PRO ASP LEU ASP ARG GLN ALA LEU ARG ARG ALA SEQRES 11 B 158 ILE HIS LEU LEU ALA GLU GLU VAL ALA GLN SER LEU GLU SEQRES 12 B 158 ILE THR VAL GLN GLU ALA LYS ARG LEU PHE GLU GLU ALA SEQRES 13 B 158 TRP GLY HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *76(H2 O) HELIX 1 AA1 PRO A 17 GLN A 31 1 15 HELIX 2 AA2 GLY A 43 PHE A 52 1 10 HELIX 3 AA3 ASP A 58 GLY A 63 1 6 HELIX 4 AA4 SER A 79 GLU A 85 1 7 HELIX 5 AA5 ILE A 128 ALA A 132 5 5 HELIX 6 AA6 THR A 335 ALA A 352 1 18 HELIX 7 AA7 GLY A 354 MET A 359 1 6 HELIX 8 AA8 THR A 368 VAL A 373 1 6 HELIX 9 AA9 SER A 375 PHE A 386 1 12 HELIX 10 AB1 PRO B 54 GLY B 58 5 5 HELIX 11 AB2 GLU B 67 GLY B 78 1 12 HELIX 12 AB3 GLN B 85 GLY B 100 1 16 HELIX 13 AB4 ASN B 101 GLU B 118 1 18 HELIX 14 AB5 PRO B 122 LEU B 144 1 23 HELIX 15 AB6 THR B 147 GLY B 160 1 14 SHEET 1 AA1 9 ILE A 54 GLU A 56 0 SHEET 2 AA1 9 LEU A 64 ILE A 73 -1 O LEU A 66 N ILE A 54 SHEET 3 AA1 9 GLN A 91 HIS A 102 -1 O ARG A 97 N GLU A 70 SHEET 4 AA1 9 ILE A 108 PRO A 119 -1 O LEU A 118 N ALA A 92 SHEET 5 AA1 9 LYS B 46 PRO B 50 -1 O LYS B 46 N GLU A 110 SHEET 6 AA1 9 VAL B 31 ASP B 39 -1 N TYR B 36 O VAL B 49 SHEET 7 AA1 9 GLY B 16 VAL B 28 -1 N ALA B 21 O GLN B 37 SHEET 8 AA1 9 LYS B 9 LEU B 12 -1 N VAL B 10 O GLY B 18 SHEET 9 AA1 9 ARG B 60 LYS B 61 -1 O ARG B 60 N VAL B 11 SHEET 1 AA2 2 ARG A 134 VAL A 135 0 SHEET 2 AA2 2 GLN A 390 LEU A 391 -1 O GLN A 390 N VAL A 135 CISPEP 1 PHE A 52 PRO A 53 0 4.31 CISPEP 2 PRO B 13 PRO B 14 0 11.28 SITE 1 AC1 5 ARG B 60 LYS B 61 GLU B 67 PRO B 102 SITE 2 AC1 5 TYR B 103 SITE 1 AC2 5 ASN B 101 SER B 143 LEU B 144 GLU B 145 SITE 2 AC2 5 HOH B 302 SITE 1 AC3 6 ARG B 60 GLY B 100 LEU B 135 GLU B 139 SITE 2 AC3 6 EDO B 204 EDO B 205 SITE 1 AC4 7 PRO B 13 PRO B 14 GLY B 16 LEU B 97 SITE 2 AC4 7 ALA B 98 EDO B 203 HOH B 325 SITE 1 AC5 6 GLY B 16 VAL B 17 LEU B 135 GLU B 138 SITE 2 AC5 6 EDO B 203 HOH B 349 CRYST1 149.321 149.321 52.256 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019137 0.00000