HEADER HYDROLASE/HYDROLASE INHIBITOR 16-DEC-14 4XBC TITLE 1.60 A RESOLUTION STRUCTURE OF NOROVIRUS 3CL PROTEASE COMPLEX WITH A TITLE 2 COVALENTLY BOUND DIPEPTIDYL INHIBITOR (1R,2S)-2-({N-[(BENZYLOXY) TITLE 3 CARBONYL]-3-CYCLOHEXYL-L-ALANYL}AMINO)-1-HYDROXY-3-[(3S)-2- TITLE 4 OXOPYRROLIDIN-3-YL]PROPANE-1-SULFONIC ACID (HEXAGONAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.66; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS (STRAIN GI/HUMAN/UNITED SOURCE 3 STATES/NORWALK/1968); SOURCE 4 ORGANISM_COMMON: HU/NV/NV/1968/US; SOURCE 5 ORGANISM_TAXID: 524364; SOURCE 6 STRAIN: GI/HUMAN/UNITED STATES/NORWALK/1968; SOURCE 7 GENE: ORF1; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PROTEASE, NOROVIRUS, NORWALK VIRUS, ANTIVIRAL INHIBITORS, DIPEPTIDYL KEYWDS 2 INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,K.P.BATTAILE,N.MEHZABEEN,A.C.G.KANKANAMALAGE,Y.KIM, AUTHOR 2 P.M.WEERAWARNA,R.A.Z.UY,V.C.DAMALANKA,S.R.MANDADAPU,K.R.ALLISTON, AUTHOR 3 W.C.GROUTAS,K.-O.CHANG REVDAT 3 22-NOV-17 4XBC 1 SOURCE JRNL REMARK REVDAT 2 22-APR-15 4XBC 1 JRNL REVDAT 1 25-MAR-15 4XBC 0 JRNL AUTH A.C.GALASITI KANKANAMALAGE,Y.KIM,P.M.WEERAWARNA,R.A.UY, JRNL AUTH 2 V.C.DAMALANKA,S.R.MANDADAPU,K.R.ALLISTON,N.MEHZABEEN, JRNL AUTH 3 K.P.BATTAILE,S.LOVELL,K.O.CHANG,W.C.GROUTAS JRNL TITL STRUCTURE-GUIDED DESIGN AND OPTIMIZATION OF DIPEPTIDYL JRNL TITL 2 INHIBITORS OF NOROVIRUS 3CL PROTEASE. STRUCTURE-ACTIVITY JRNL TITL 3 RELATIONSHIPS AND BIOCHEMICAL, X-RAY CRYSTALLOGRAPHIC, JRNL TITL 4 CELL-BASED, AND IN VIVO STUDIES. JRNL REF J.MED.CHEM. V. 58 3144 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25761614 JRNL DOI 10.1021/JM5019934 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.730 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8638 - 3.5575 1.00 2827 135 0.1610 0.1497 REMARK 3 2 3.5575 - 2.8240 1.00 2656 144 0.1597 0.1871 REMARK 3 3 2.8240 - 2.4671 1.00 2614 148 0.1632 0.1733 REMARK 3 4 2.4671 - 2.2416 1.00 2612 131 0.1440 0.1544 REMARK 3 5 2.2416 - 2.0809 1.00 2606 125 0.1448 0.1633 REMARK 3 6 2.0809 - 1.9583 1.00 2567 156 0.1523 0.1715 REMARK 3 7 1.9583 - 1.8602 1.00 2546 153 0.1550 0.1743 REMARK 3 8 1.8602 - 1.7792 1.00 2543 148 0.1708 0.2069 REMARK 3 9 1.7792 - 1.7107 1.00 2561 133 0.1981 0.2012 REMARK 3 10 1.7107 - 1.6517 1.00 2577 121 0.2182 0.2329 REMARK 3 11 1.6517 - 1.6000 1.00 2551 136 0.2483 0.2573 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1409 REMARK 3 ANGLE : 1.234 1919 REMARK 3 CHIRALITY : 0.083 218 REMARK 3 PLANARITY : 0.007 241 REMARK 3 DIHEDRAL : 15.611 525 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1028 24.9424 -2.9557 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.0627 REMARK 3 T33: 0.0628 T12: 0.0372 REMARK 3 T13: 0.0134 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 5.6097 L22: 3.7639 REMARK 3 L33: 3.4874 L12: 0.5574 REMARK 3 L13: 1.1121 L23: 1.0670 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.1155 S13: -0.2457 REMARK 3 S21: 0.1109 S22: 0.0613 S23: 0.1509 REMARK 3 S31: 0.1315 S32: -0.1243 S33: -0.0289 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1577 35.6479 -2.6755 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.0605 REMARK 3 T33: 0.0623 T12: 0.0136 REMARK 3 T13: 0.0094 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.6244 L22: 1.2907 REMARK 3 L33: 2.4363 L12: 0.3389 REMARK 3 L13: 0.8248 L23: 0.5173 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.0354 S13: 0.0522 REMARK 3 S21: 0.0082 S22: 0.0464 S23: -0.0975 REMARK 3 S31: -0.0271 S32: 0.1590 S33: -0.0603 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7898 41.4930 -7.3167 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.1911 REMARK 3 T33: 0.2236 T12: -0.0139 REMARK 3 T13: 0.0069 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 5.4318 L22: 2.4215 REMARK 3 L33: 6.9361 L12: 1.9889 REMARK 3 L13: 1.0777 L23: -2.9792 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: 0.0831 S13: -0.0397 REMARK 3 S21: -0.0477 S22: 0.0100 S23: -0.4820 REMARK 3 S31: -0.1915 S32: 0.8518 S33: -0.0698 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8165 44.1855 -5.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.0698 REMARK 3 T33: 0.1342 T12: -0.0109 REMARK 3 T13: 0.0130 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.4929 L22: 2.4122 REMARK 3 L33: 8.0059 L12: -0.1855 REMARK 3 L13: -3.0846 L23: -0.5914 REMARK 3 S TENSOR REMARK 3 S11: 0.1444 S12: 0.1117 S13: 0.3388 REMARK 3 S21: -0.0145 S22: 0.1309 S23: 0.0257 REMARK 3 S31: -0.3147 S32: 0.0094 S33: -0.2658 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8283 30.2706 -1.3822 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0736 REMARK 3 T33: 0.0800 T12: -0.0096 REMARK 3 T13: -0.0141 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.3437 L22: 1.3574 REMARK 3 L33: 2.1626 L12: -0.2326 REMARK 3 L13: -0.4315 L23: 0.1816 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: -0.0060 S13: 0.0232 REMARK 3 S21: 0.0322 S22: 0.0344 S23: 0.0086 REMARK 3 S31: -0.0182 S32: -0.1280 S33: -0.0118 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6601 34.5577 12.5279 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.1061 REMARK 3 T33: 0.0404 T12: 0.0190 REMARK 3 T13: 0.0186 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.1825 L22: 6.1855 REMARK 3 L33: 1.7013 L12: -0.5261 REMARK 3 L13: -0.6018 L23: 1.8541 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: -0.0710 S13: 0.0077 REMARK 3 S21: 0.2078 S22: -0.0708 S23: 0.1495 REMARK 3 S31: 0.0853 S32: 0.0559 S33: 0.0253 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2106 39.0229 13.2081 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.1744 REMARK 3 T33: 0.0940 T12: 0.0057 REMARK 3 T13: 0.0058 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.9747 L22: 4.8087 REMARK 3 L33: 2.9688 L12: 1.5972 REMARK 3 L13: -0.9399 L23: -0.9205 REMARK 3 S TENSOR REMARK 3 S11: 0.1589 S12: -0.2292 S13: 0.1698 REMARK 3 S21: 0.3352 S22: -0.2851 S23: -0.2867 REMARK 3 S31: -0.1685 S32: 0.3324 S33: 0.1155 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5367 28.7187 10.4829 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1135 REMARK 3 T33: 0.1148 T12: 0.0369 REMARK 3 T13: -0.0117 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.7167 L22: 2.3281 REMARK 3 L33: 2.0610 L12: 2.0208 REMARK 3 L13: -0.8293 L23: 1.0241 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: -0.2991 S13: -0.3207 REMARK 3 S21: 0.3624 S22: -0.1134 S23: -0.0656 REMARK 3 S31: 0.2056 S32: 0.2406 S33: 0.0118 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0221 31.3232 6.6371 REMARK 3 T TENSOR REMARK 3 T11: 0.0499 T22: 0.0725 REMARK 3 T33: 0.0878 T12: 0.0242 REMARK 3 T13: 0.0131 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 3.0468 L22: 2.5015 REMARK 3 L33: 4.4009 L12: 1.1101 REMARK 3 L13: 1.5352 L23: 1.2163 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.1361 S13: -0.1066 REMARK 3 S21: 0.0885 S22: 0.0759 S23: 0.1765 REMARK 3 S31: 0.0302 S32: -0.1629 S33: -0.0800 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8456 45.8629 7.5886 REMARK 3 T TENSOR REMARK 3 T11: 0.2014 T22: 0.2139 REMARK 3 T33: 0.1726 T12: 0.0535 REMARK 3 T13: -0.0096 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 8.7535 L22: 1.4855 REMARK 3 L33: 4.7770 L12: -0.1196 REMARK 3 L13: -6.4274 L23: 0.3798 REMARK 3 S TENSOR REMARK 3 S11: 0.2575 S12: 0.3930 S13: 0.6004 REMARK 3 S21: -0.1550 S22: -0.0477 S23: 0.1069 REMARK 3 S31: -0.4450 S32: -0.6759 S33: -0.2257 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30219 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.90 REMARK 200 R MERGE FOR SHELL (I) : 1.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG3350, 200 MM AMMONIUM REMARK 280 CITRATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.33200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.16600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.74900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.58300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.91500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.33200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 17.16600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 8.58300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.74900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.91500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O3 PG4 A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 376 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 378 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 THR A 123 REMARK 465 GLY A 124 REMARK 465 ALA A 125 REMARK 465 ASN A 126 REMARK 465 ALA A 127 REMARK 465 LYS A 128 REMARK 465 GLY A 129 REMARK 465 MET A 130 REMARK 465 ASP A 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 37 CE NZ REMARK 470 LYS A 62 CE NZ REMARK 470 LYS A 63 CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 ASN A 149 CG OD1 ND2 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 470 LYS A 162 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 397 O HOH A 459 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 79 OG1 THR A 166 7555 2.02 REMARK 500 O HOH A 362 O HOH A 362 10665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M40 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XBB RELATED DB: PDB REMARK 900 RELATED ID: 4XBD RELATED DB: PDB DBREF 4XBC A 1 181 UNP Q83883 POLG_NVN68 1101 1281 SEQADV 4XBC HIS A -6 UNP Q83883 EXPRESSION TAG SEQADV 4XBC HIS A -5 UNP Q83883 EXPRESSION TAG SEQADV 4XBC HIS A -4 UNP Q83883 EXPRESSION TAG SEQADV 4XBC HIS A -3 UNP Q83883 EXPRESSION TAG SEQADV 4XBC HIS A -2 UNP Q83883 EXPRESSION TAG SEQADV 4XBC HIS A -1 UNP Q83883 EXPRESSION TAG SEQADV 4XBC MET A 0 UNP Q83883 EXPRESSION TAG SEQRES 1 A 188 HIS HIS HIS HIS HIS HIS MET ALA PRO PRO THR LEU TRP SEQRES 2 A 188 SER ARG VAL THR LYS PHE GLY SER GLY TRP GLY PHE TRP SEQRES 3 A 188 VAL SER PRO THR VAL PHE ILE THR THR THR HIS VAL VAL SEQRES 4 A 188 PRO THR GLY VAL LYS GLU PHE PHE GLY GLU PRO LEU SER SEQRES 5 A 188 SER ILE ALA ILE HIS GLN ALA GLY GLU PHE THR GLN PHE SEQRES 6 A 188 ARG PHE SER LYS LYS MET ARG PRO ASP LEU THR GLY MET SEQRES 7 A 188 VAL LEU GLU GLU GLY CYS PRO GLU GLY THR VAL CYS SER SEQRES 8 A 188 VAL LEU ILE LYS ARG ASP SER GLY GLU LEU LEU PRO LEU SEQRES 9 A 188 ALA VAL ARG MET GLY ALA ILE ALA SER MET ARG ILE GLN SEQRES 10 A 188 GLY ARG LEU VAL HIS GLY GLN SER GLY MET LEU LEU THR SEQRES 11 A 188 GLY ALA ASN ALA LYS GLY MET ASP LEU GLY THR ILE PRO SEQRES 12 A 188 GLY ASP CYS GLY ALA PRO TYR VAL HIS LYS ARG GLY ASN SEQRES 13 A 188 ASP TRP VAL VAL CYS GLY VAL HIS ALA ALA ALA THR LYS SEQRES 14 A 188 SER GLY ASN THR VAL VAL CYS ALA VAL GLN ALA GLY GLU SEQRES 15 A 188 GLY GLU THR ALA LEU GLU HET M40 A 201 32 HET PG4 A 202 17 HETNAM M40 (1R,2S)-2-({N-[(BENZYLOXY)CARBONYL]-3-CYCLOHEXYL-L- HETNAM 2 M40 ALANYL}AMINO)-1-HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3- HETNAM 3 M40 YL]PROPANE-1-SULFONIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 M40 C24 H35 N3 O8 S FORMUL 3 PG4 C8 H18 O5 FORMUL 4 HOH *160(H2 O) HELIX 1 AA1 PRO A 2 ARG A 8 1 7 HELIX 2 AA2 HIS A 30 VAL A 32 5 3 SHEET 1 AA1 5 VAL A 9 PHE A 12 0 SHEET 2 AA1 5 GLY A 15 TRP A 19 -1 O GLY A 17 N THR A 10 SHEET 3 AA1 5 VAL A 24 THR A 28 -1 O ILE A 26 N PHE A 18 SHEET 4 AA1 5 PHE A 55 PHE A 60 -1 O PHE A 58 N PHE A 25 SHEET 5 AA1 5 ILE A 47 ALA A 52 -1 N HIS A 50 O GLN A 57 SHEET 1 AA2 2 GLU A 38 PHE A 39 0 SHEET 2 AA2 2 GLU A 42 PRO A 43 -1 O GLU A 42 N PHE A 39 SHEET 1 AA3 8 VAL A 72 LEU A 73 0 SHEET 2 AA3 8 ASP A 150 ALA A 160 1 O VAL A 153 N VAL A 72 SHEET 3 AA3 8 THR A 166 ALA A 170 -1 O ALA A 170 N VAL A 156 SHEET 4 AA3 8 ARG A 112 LEU A 121 -1 N GLY A 119 O VAL A 167 SHEET 5 AA3 8 LEU A 94 ILE A 109 -1 N GLY A 102 O SER A 118 SHEET 6 AA3 8 VAL A 82 LYS A 88 -1 N ILE A 87 O LEU A 95 SHEET 7 AA3 8 PRO A 142 ARG A 147 -1 O VAL A 144 N SER A 84 SHEET 8 AA3 8 ASP A 150 ALA A 160 -1 O ASP A 150 N ARG A 147 LINK SG CYS A 139 C30 M40 A 201 1555 1555 1.80 SITE 1 AC1 14 HIS A 30 GLU A 54 GLN A 110 ARG A 112 SITE 2 AC1 14 THR A 134 CYS A 139 HIS A 157 ALA A 158 SITE 3 AC1 14 ALA A 159 ALA A 160 HOH A 352 HOH A 396 SITE 4 AC1 14 HOH A 397 HOH A 438 SITE 1 AC2 8 GLU A 79 ARG A 100 MET A 101 GLY A 102 SITE 2 AC2 8 ALA A 103 SER A 118 GLY A 119 MET A 120 CRYST1 121.853 121.853 51.498 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008207 0.004738 0.000000 0.00000 SCALE2 0.000000 0.009476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019418 0.00000