HEADER IMMUNE SYSTEM 18-DEC-14 4XCF TITLE CRYSTAL STRUCTURE OF HUMAN 4E10 FAB IN COMPLEX WITH ITS PEPTIDE TITLE 2 EPITOPE ON HIV-1 GP41; CRYSTALS CRYOPROTECTED WITH TITLE 3 PHOSPHATIDYLCHOLINE (03:0 PC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4E10 FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 4E10 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MODIFIED FRAGMENT OF HIV-1 GLYCOPROTEIN (GP41) INCLUDING COMPND 11 THE MPER REGION 671-683; COMPND 12 CHAIN: P; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: 293 FREESTYLE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDR12; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: 293 FREESTYLE; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PDR12; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 20 ORGANISM_TAXID: 11676 KEYWDS 4E10 FAB ANTI HIV-1 GP41, PHOSPHATIDYLCHOLINE, MEMBRANE LIPID, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.IRIMIA,R.L.STANFIELD,I.A.WILSON REVDAT 5 30-OCT-24 4XCF 1 REMARK REVDAT 4 27-SEP-23 4XCF 1 REMARK REVDAT 3 11-DEC-19 4XCF 1 REMARK REVDAT 2 06-SEP-17 4XCF 1 JRNL REMARK REVDAT 1 03-FEB-16 4XCF 0 JRNL AUTH A.IRIMIA,A.SARKAR,R.L.STANFIELD,I.A.WILSON JRNL TITL CRYSTALLOGRAPHIC IDENTIFICATION OF LIPID AS AN INTEGRAL JRNL TITL 2 COMPONENT OF THE EPITOPE OF HIV BROADLY NEUTRALIZING JRNL TITL 3 ANTIBODY 4E10. JRNL REF IMMUNITY V. 44 21 2016 JRNL REFN ISSN 1074-7613 JRNL PMID 26777395 JRNL DOI 10.1016/J.IMMUNI.2015.12.001 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 93363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9417 - 4.4339 0.96 3201 169 0.1560 0.1562 REMARK 3 2 4.4339 - 3.5203 0.99 3199 168 0.1242 0.1534 REMARK 3 3 3.5203 - 3.0756 1.00 3241 171 0.1347 0.1559 REMARK 3 4 3.0756 - 2.7945 1.00 3180 167 0.1438 0.1761 REMARK 3 5 2.7945 - 2.5943 1.00 3197 168 0.1441 0.1871 REMARK 3 6 2.5943 - 2.4414 1.00 3194 168 0.1359 0.1725 REMARK 3 7 2.4414 - 2.3191 1.00 3186 168 0.1268 0.1505 REMARK 3 8 2.3191 - 2.2182 1.00 3199 169 0.1119 0.1402 REMARK 3 9 2.2182 - 2.1328 1.00 3145 165 0.1077 0.1467 REMARK 3 10 2.1328 - 2.0592 1.00 3201 168 0.1105 0.1414 REMARK 3 11 2.0592 - 1.9948 1.00 3198 169 0.1132 0.1480 REMARK 3 12 1.9948 - 1.9378 1.00 3119 164 0.1139 0.1647 REMARK 3 13 1.9378 - 1.8868 1.00 3202 168 0.1131 0.1876 REMARK 3 14 1.8868 - 1.8408 1.00 3158 167 0.1235 0.1607 REMARK 3 15 1.8408 - 1.7989 1.00 3186 167 0.1280 0.1801 REMARK 3 16 1.7989 - 1.7606 1.00 3191 168 0.1253 0.1770 REMARK 3 17 1.7606 - 1.7254 1.00 3164 167 0.1306 0.1865 REMARK 3 18 1.7254 - 1.6929 1.00 3153 166 0.1333 0.1897 REMARK 3 19 1.6929 - 1.6626 1.00 3136 165 0.1422 0.1946 REMARK 3 20 1.6626 - 1.6344 1.00 3184 168 0.1566 0.1981 REMARK 3 21 1.6344 - 1.6081 0.99 3137 165 0.1578 0.2246 REMARK 3 22 1.6081 - 1.5833 0.97 3072 162 0.1698 0.2116 REMARK 3 23 1.5833 - 1.5601 0.94 2977 156 0.1719 0.2141 REMARK 3 24 1.5601 - 1.5381 0.90 2782 146 0.1820 0.2309 REMARK 3 25 1.5381 - 1.5173 0.85 2728 144 0.1971 0.2377 REMARK 3 26 1.5173 - 1.4976 0.80 2526 133 0.2160 0.2697 REMARK 3 27 1.4976 - 1.4789 0.73 2296 121 0.2326 0.3218 REMARK 3 28 1.4789 - 1.4611 0.68 2186 115 0.2627 0.3429 REMARK 3 29 1.4611 - 1.4441 0.59 1833 97 0.2844 0.2909 REMARK 3 30 1.4441 - 1.4300 0.48 1523 80 0.3138 0.4039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3922 REMARK 3 ANGLE : 1.598 5399 REMARK 3 CHIRALITY : 0.115 594 REMARK 3 PLANARITY : 0.009 701 REMARK 3 DIHEDRAL : 13.191 1455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000205433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL, NON FIXED EXIT SLIT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 0.98.701 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 0.98.701 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93375 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 35.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 2FX7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE COMPLEX GREW FROM 1:1 REMARK 280 PROTEIN:RESERVOIR SOLUTION SITTING DROPS EQUILIBRATED AGAINST 20% REMARK 280 PEG 8000, 0.2 M SODIUM ACETATE, PH 5.5, 0.2 M SODIUM REMARK 280 THIOCYANATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.38000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.29400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.38000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.29400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 214 REMARK 465 GLY H 98A REMARK 465 TRP H 98B REMARK 465 GLY H 98C REMARK 465 TRP H 98D REMARK 465 LYS H 131 REMARK 465 SER H 132 REMARK 465 THR H 133 REMARK 465 SER H 134 REMARK 465 GLY H 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 1 CD OE1 NE2 REMARK 470 LEU H 100C N CA CB CG CD1 CD2 REMARK 470 LYS H 228 CB CG CD CE NZ REMARK 470 LYS P 683 CD CE NZ REMARK 470 LYS P 684 CE NZ REMARK 470 LYS P 685 CD CE NZ REMARK 470 LYS P 686 C CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 401 O HOH L 713 1.83 REMARK 500 O HOH H 426 O HOH H 456 1.86 REMARK 500 O HOH L 520 O HOH L 712 1.88 REMARK 500 O HOH H 550 O HOH H 676 1.95 REMARK 500 NE2 GLN H 39 O HOH H 685 2.03 REMARK 500 O HOH H 641 O HOH H 650 2.07 REMARK 500 O HOH H 550 O HOH H 652 2.07 REMARK 500 O HOH H 441 O HOH H 448 2.11 REMARK 500 OG SER L 176 O HOH L 540 2.11 REMARK 500 O HOH L 678 O HOH L 686 2.12 REMARK 500 OE1 GLN L 199 O HOH L 401 2.13 REMARK 500 O HOH L 598 O HOH H 607 2.17 REMARK 500 O HOH L 448 O HOH L 460 2.17 REMARK 500 O HOH L 623 O HOH L 649 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 442 O HOH H 472 2556 2.19 REMARK 500 O HOH L 450 O HOH H 407 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER L 162 CB SER L 162 OG -0.086 REMARK 500 LYS H 117 CE LYS H 117 NZ 0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 54 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 51 -38.59 71.20 REMARK 500 ASP H 146 61.71 71.95 REMARK 500 ASP H 146 61.71 69.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 585 DISTANCE = 6.02 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 43Y L 301 REMARK 610 43Y L 302 REMARK 610 43Y H 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 43Y L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 43Y L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 43Y H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 43Y H 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XAW RELATED DB: PDB REMARK 900 RELATED ID: 4XBG RELATED DB: PDB REMARK 900 RELATED ID: 4XBE RELATED DB: PDB REMARK 900 RELATED ID: 4XC1 RELATED DB: PDB REMARK 900 RELATED ID: 4XC3 RELATED DB: PDB REMARK 900 RELATED ID: 4XBP RELATED DB: PDB REMARK 900 RELATED ID: 4XCE RELATED DB: PDB REMARK 900 RELATED ID: 4XCC RELATED DB: PDB REMARK 900 RELATED ID: 4XCN RELATED DB: PDB REMARK 900 RELATED ID: 4XCY RELATED DB: PDB DBREF 4XCF L 1 214 PDB 4XCF 4XCF 1 214 DBREF 4XCF H 1 228 PDB 4XCF 4XCF 1 228 DBREF 4XCF P 671 686 PDB 4XCF 4XCF 671 686 SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR GLN SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER VAL GLY ASN ASN LYS LEU ALA TRP TYR GLN GLN SEQRES 4 L 215 ARG PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 SER SER ARG PRO SER GLY VAL ALA ASP ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR GLY GLN SER LEU SER THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU VAL LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 228 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS ARG SEQRES 2 H 228 PRO GLY SER SER VAL THR VAL SER CYS LYS ALA SER GLY SEQRES 3 H 228 GLY SER PHE SER THR TYR ALA LEU SER TRP VAL ARG GLN SEQRES 4 H 228 ALA PRO GLY ARG GLY LEU GLU TRP MET GLY GLY VAL ILE SEQRES 5 H 228 PRO LEU LEU THR ILE THR ASN TYR ALA PRO ARG PHE GLN SEQRES 6 H 228 GLY ARG ILE THR ILE THR ALA ASP ARG SER THR SER THR SEQRES 7 H 228 ALA TYR LEU GLU LEU ASN SER LEU ARG PRO GLU ASP THR SEQRES 8 H 228 ALA VAL TYR TYR CYS ALA ARG GLU GLY THR THR GLY TRP SEQRES 9 H 228 GLY TRP LEU GLY LYS PRO ILE GLY ALA PHE ALA HIS TRP SEQRES 10 H 228 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 H 228 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 228 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 228 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 228 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 228 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 228 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 228 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 228 ASP LYS LYS VAL GLU PRO LYS SEQRES 1 P 16 ASN TRP TRP ASP ILE THR ASN TRP LEU TRP TYR ILE LYS SEQRES 2 P 16 LYS LYS LYS HET 43Y L 301 20 HET 43Y L 302 11 HET 43Y H 301 22 HET 43Y H 302 24 HETNAM 43Y [(2R)-3-[OXIDANYL-[2-(TRIMETHYL-$L^{4}-AZANYL) HETNAM 2 43Y ETHOXY]PHOSPHORYL]OXY-2-PROPANOYLOXY-PROPYL] HETNAM 3 43Y PROPANOATE HETSYN 43Y 1,2-DIPROPIONYL-SN-GLYCERO-3-PHOSPHOCHOLINE FORMUL 4 43Y 4(C14 H29 N O8 P 1+) FORMUL 8 HOH *611(H2 O) HELIX 1 AA1 VAL L 28 ASN L 31 5 4 HELIX 2 AA2 GLU L 79 PHE L 83 5 5 HELIX 3 AA3 SER L 121 LYS L 126 1 6 HELIX 4 AA4 LYS L 183 GLU L 187 1 5 HELIX 5 AA5 ARG H 83 THR H 87 5 5 HELIX 6 AA6 SER H 163 ALA H 165 5 3 HELIX 7 AA7 SER H 196 LEU H 198 5 3 HELIX 8 AA8 LYS H 213 ASN H 216 5 4 HELIX 9 AA9 ASN P 671 TRP P 673 5 3 HELIX 10 AB1 ASP P 674 LYS P 686 1 13 SHEET 1 AA1 4 LEU L 4 THR L 5 0 SHEET 2 AA1 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA2 5 THR L 10 LEU L 13 0 SHEET 2 AA2 5 THR L 102 VAL L 106 1 O LYS L 103 N GLN L 11 SHEET 3 AA2 5 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA2 5 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA2 5 ARG L 45 ILE L 48 -1 O LEU L 47 N TRP L 35 SHEET 1 AA3 4 THR L 10 LEU L 13 0 SHEET 2 AA3 4 THR L 102 VAL L 106 1 O LYS L 103 N GLN L 11 SHEET 3 AA3 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AA5 4 ALA L 153 LEU L 154 0 SHEET 2 AA5 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA5 4 VAL L 191 HIS L 198 -1 O GLU L 195 N GLN L 147 SHEET 4 AA5 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AA6 4 GLN H 3 GLN H 6 0 SHEET 2 AA6 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA6 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 AA6 4 ILE H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA7 6 GLU H 10 LYS H 12 0 SHEET 2 AA7 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA7 6 ALA H 88 THR H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA7 6 LEU H 34 GLN H 39 -1 N SER H 35 O ALA H 93 SHEET 5 AA7 6 LEU H 45 ILE H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA7 6 ILE H 56 TYR H 59 -1 O ILE H 56 N ILE H 52 SHEET 1 AA8 4 GLU H 10 LYS H 12 0 SHEET 2 AA8 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA8 4 ALA H 88 THR H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 4 LYS H 100E TRP H 103 -1 O HIS H 102 N ARG H 94 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 122 SHEET 3 AA9 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 AA9 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 122 SHEET 3 AB1 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 AB1 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 AB2 3 THR H 153 TRP H 157 0 SHEET 2 AB2 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 156 SHEET 3 AB2 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.13 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.13 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.06 CISPEP 1 SER L 7 PRO L 8 0 -2.71 CISPEP 2 TYR L 140 PRO L 141 0 6.11 CISPEP 3 PHE H 148 PRO H 149 0 -7.27 CISPEP 4 GLU H 150 PRO H 151 0 -0.19 SITE 1 AC1 8 43Y H 301 GLY L 9 THR L 10 GLN L 100 SITE 2 AC1 8 GLY L 101 HOH L 414 HOH L 432 HOH L 539 SITE 1 AC2 5 ARG L 108 THR L 109 LYS L 169 ASP L 170 SITE 2 AC2 5 SER L 171 SITE 1 AC3 11 THR H 116 LYS H 117 GLY H 118 PRO H 214 SITE 2 AC3 11 SER H 215 ASN H 216 THR H 217 HOH H 439 SITE 3 AC3 11 HOH H 450 43Y L 301 HOH L 418 SITE 1 AC4 11 SER H 7 THR H 19 THR H 70 TYR H 79 SITE 2 AC4 11 GLU H 81 HOH H 429 GLN L 27 SER L 27A SITE 3 AC4 11 SER L 67 GLY L 68 THR L 69 CRYST1 156.760 44.588 85.153 90.00 113.53 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006379 0.000000 0.002778 0.00000 SCALE2 0.000000 0.022428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012809 0.00000