HEADER HYDROLASE 18-DEC-14 4XCT TITLE CRYSTAL STRUCTURE OF A HYDROXAMATE BASED INHIBITOR ARP101 (EN73) IN TITLE 2 COMPLEX WITH THE MMP-9 CATALYTIC DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX METALLOPROTEINASE-9,MATRIX METALLOPROTEINASE-9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 113-216,UNP RESIDUES 392-444; COMPND 5 SYNONYM: MMP-9,92 KDA GELATINASE,92 KDA TYPE IV COLLAGENASE, COMPND 6 GELATINASE B,GELB; COMPND 7 EC: 3.4.24.35; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: N73 ZINC CHELATING INHIBITOR - HUMAN WILD-TYPE MMP-9 COMPND 10 CATALYTIC DOMAIN UNP RESIDUES 107-215/391-443 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP9, CLG4B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-14B KEYWDS INHIBITOR-COMPLEX, METALLOPROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.A.STURA,L.TEPSHI,E.NUTI,V.DIVE,E.CASSAR-LAJEUNESSE,L.VERA, AUTHOR 2 A.ROSSELLO REVDAT 5 10-JAN-24 4XCT 1 LINK REVDAT 4 29-MAY-19 4XCT 1 COMPND REMARK HETNAM FORMUL REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 07-OCT-15 4XCT 1 JRNL REVDAT 2 26-AUG-15 4XCT 1 JRNL REVDAT 1 22-APR-15 4XCT 0 JRNL AUTH E.NUTI,A.R.CANTELMO,C.GALLO,A.BRUNO,B.BASSANI,C.CAMODECA, JRNL AUTH 2 T.TUCCINARDI,L.VERA,E.ORLANDINI,S.NENCETTI,E.A.STURA, JRNL AUTH 3 A.MARTINELLI,V.DIVE,A.ALBINI,A.ROSSELLO JRNL TITL N-O-ISOPROPYL SULFONAMIDO-BASED HYDROXAMATES AS MATRIX JRNL TITL 2 METALLOPROTEINASE INHIBITORS: HIT SELECTION AND IN VIVO JRNL TITL 3 ANTIANGIOGENIC ACTIVITY. JRNL REF J.MED.CHEM. V. 58 7224 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26263024 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00367 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3065 - 3.1315 1.00 2803 148 0.1443 0.2063 REMARK 3 2 3.1315 - 2.4858 1.00 2645 138 0.1680 0.2244 REMARK 3 3 2.4858 - 2.1716 1.00 2627 138 0.1575 0.2219 REMARK 3 4 2.1716 - 1.9731 1.00 2564 135 0.1529 0.2057 REMARK 3 5 1.9731 - 1.8317 1.00 2589 137 0.1583 0.2284 REMARK 3 6 1.8317 - 1.7237 1.00 2523 133 0.1653 0.2518 REMARK 3 7 1.7237 - 1.6374 1.00 2574 135 0.1746 0.2284 REMARK 3 8 1.6374 - 1.5661 1.00 2536 134 0.1856 0.2768 REMARK 3 9 1.5661 - 1.5058 1.00 2572 135 0.2085 0.2735 REMARK 3 10 1.5058 - 1.4539 1.00 2506 130 0.2258 0.3337 REMARK 3 11 1.4539 - 1.4084 1.00 2525 133 0.2502 0.3349 REMARK 3 12 1.4084 - 1.3681 1.00 2504 131 0.2631 0.3288 REMARK 3 13 1.3681 - 1.3321 1.00 2564 134 0.2723 0.3198 REMARK 3 14 1.3321 - 1.2996 0.98 2473 131 0.2760 0.3203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1497 REMARK 3 ANGLE : 1.049 2047 REMARK 3 CHIRALITY : 0.053 198 REMARK 3 PLANARITY : 0.005 273 REMARK 3 DIHEDRAL : 14.462 548 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38007 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 14.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.16 REMARK 200 R MERGE FOR SHELL (I) : 1.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4H3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: HMMP-9-WT AT 337 MICRO-M WITH REMARK 280 120 MILLI-M ACETOHYDROXAMIC ACID. PRECIPITANT: 40.5% MPEG 5,000, REMARK 280 180 MM IMIDAZOLE PIPERIDINE, PH 8.5. CRYOPROTECTANT: 40% REMARK 280 CRYOPROTX-C1, 10% PEG 10K, 10% PCTP 50/50, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.30667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.65333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.65333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.30667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 494 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 627 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 160 66.28 -114.98 REMARK 500 ALA A 173 -136.70 49.34 REMARK 500 ASP A 185 -161.01 57.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 630 DISTANCE = 6.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 ASP A 131 OD2 52.2 REMARK 620 3 ASP A 206 O 151.5 149.3 REMARK 620 4 ASP A 206 OD1 92.3 91.3 73.5 REMARK 620 5 GLU A 208 O 126.3 77.4 82.0 107.6 REMARK 620 6 HOH A 512 O 87.1 93.3 104.3 173.7 77.7 REMARK 620 7 HOH A 515 O 78.6 130.6 75.9 86.1 149.6 87.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 165 O REMARK 620 2 GLY A 197 O 172.8 REMARK 620 3 GLN A 199 O 102.8 83.8 REMARK 620 4 ASP A 201 OD1 86.2 96.2 96.0 REMARK 620 5 HOH A 415 O 88.3 84.7 164.2 95.9 REMARK 620 6 HOH A 452 O 86.5 91.1 84.4 172.6 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 ASP A 177 OD2 109.7 REMARK 620 3 HIS A 190 NE2 114.0 114.0 REMARK 620 4 HIS A 203 ND1 108.8 92.2 116.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD1 REMARK 620 2 GLY A 183 O 88.6 REMARK 620 3 ASP A 185 O 84.0 85.1 REMARK 620 4 LEU A 187 O 92.4 177.6 92.9 REMARK 620 5 ASP A 205 OD2 91.6 88.1 171.9 94.1 REMARK 620 6 GLU A 208 OE2 170.1 94.3 86.8 84.4 97.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 226 NE2 REMARK 620 2 HIS A 230 NE2 93.6 REMARK 620 3 HIS A 236 NE2 108.6 94.3 REMARK 620 4 N73 A 301 O8 136.4 126.9 85.9 REMARK 620 5 N73 A 301 OA8 98.2 88.6 152.7 70.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N73 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BUD A 316 DBREF 4XCT A 113 216 UNP P14780 MMP9_HUMAN 113 216 DBREF 4XCT A 217 269 UNP P14780 MMP9_HUMAN 392 444 SEQRES 1 A 157 ASP LEU LYS TRP HIS HIS HIS ASN ILE THR TYR TRP ILE SEQRES 2 A 157 GLN ASN TYR SER GLU ASP LEU PRO ARG ALA VAL ILE ASP SEQRES 3 A 157 ASP ALA PHE ALA ARG ALA PHE ALA LEU TRP SER ALA VAL SEQRES 4 A 157 THR PRO LEU THR PHE THR ARG VAL TYR SER ARG ASP ALA SEQRES 5 A 157 ASP ILE VAL ILE GLN PHE GLY VAL ALA GLU HIS GLY ASP SEQRES 6 A 157 GLY TYR PRO PHE ASP GLY LYS ASP GLY LEU LEU ALA HIS SEQRES 7 A 157 ALA PHE PRO PRO GLY PRO GLY ILE GLN GLY ASP ALA HIS SEQRES 8 A 157 PHE ASP ASP ASP GLU LEU TRP SER LEU GLY LYS GLY VAL SEQRES 9 A 157 GLY TYR SER LEU PHE LEU VAL ALA ALA HIS GLU PHE GLY SEQRES 10 A 157 HIS ALA LEU GLY LEU ASP HIS SER SER VAL PRO GLU ALA SEQRES 11 A 157 LEU MET TYR PRO MET TYR ARG PHE THR GLU GLY PRO PRO SEQRES 12 A 157 LEU HIS LYS ASP ASP VAL ASN GLY ILE ARG HIS LEU TYR SEQRES 13 A 157 GLY HET N73 A 301 28 HET ZN A 302 1 HET ZN A 303 1 HET CA A 304 1 HET CA A 305 1 HET CA A 306 1 HET DMS A 307 4 HET DMS A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET GOL A 313 6 HET PGO A 314 5 HET PGO A 315 5 HET BUD A 316 6 HETNAM N73 (2~{R})-3-METHYL-~{N}-OXIDANYLIDENE-2-[(4- HETNAM 2 N73 PHENYLPHENYL)SULFONYL-PROPAN-2-YLOXY-AMINO]BUTANAMIDE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM PGO S-1,2-PROPANEDIOL HETNAM BUD (2S,3S)-BUTANE-2,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 N73 C20 H24 N2 O5 S FORMUL 3 ZN 2(ZN 2+) FORMUL 5 CA 3(CA 2+) FORMUL 8 DMS 2(C2 H6 O S) FORMUL 10 EDO 4(C2 H6 O2) FORMUL 14 GOL C3 H8 O3 FORMUL 15 PGO 2(C3 H8 O2) FORMUL 17 BUD C4 H10 O2 FORMUL 18 HOH *230(H2 O) HELIX 1 AA1 PRO A 133 ALA A 150 1 18 HELIX 2 AA2 LEU A 220 LEU A 232 1 13 HELIX 3 AA3 HIS A 257 GLY A 269 1 13 SHEET 1 AA1 5 THR A 155 ARG A 158 0 SHEET 2 AA1 5 ASN A 120 ILE A 125 1 N ILE A 121 O THR A 157 SHEET 3 AA1 5 ILE A 166 GLY A 171 1 O ILE A 168 N TRP A 124 SHEET 4 AA1 5 ALA A 202 ASP A 205 1 O PHE A 204 N GLN A 169 SHEET 5 AA1 5 ALA A 189 ALA A 191 -1 N HIS A 190 O HIS A 203 SHEET 1 AA2 2 TRP A 210 SER A 211 0 SHEET 2 AA2 2 TYR A 218 SER A 219 1 O TYR A 218 N SER A 211 LINK OD1 ASP A 131 CA CA A 306 1555 1555 2.62 LINK OD2 ASP A 131 CA CA A 306 1555 1555 2.37 LINK O ASP A 165 CA CA A 305 1555 1555 2.34 LINK NE2 HIS A 175 ZN ZN A 303 1555 1555 1.97 LINK OD2 ASP A 177 ZN ZN A 303 1555 1555 1.99 LINK OD1 ASP A 182 CA CA A 304 1555 1555 2.43 LINK O GLY A 183 CA CA A 304 1555 1555 2.28 LINK O ASP A 185 CA CA A 304 1555 1555 2.33 LINK O LEU A 187 CA CA A 304 1555 1555 2.27 LINK NE2 HIS A 190 ZN ZN A 303 1555 1555 2.06 LINK O GLY A 197 CA CA A 305 1555 1555 2.31 LINK O GLN A 199 CA CA A 305 1555 1555 2.26 LINK OD1 ASP A 201 CA CA A 305 1555 1555 2.34 LINK ND1 HIS A 203 ZN ZN A 303 1555 1555 2.06 LINK OD2 ASP A 205 CA CA A 304 1555 1555 2.31 LINK O ASP A 206 CA CA A 306 1555 1555 2.41 LINK OD1 ASP A 206 CA CA A 306 1555 1555 2.42 LINK OE2 GLU A 208 CA CA A 304 1555 1555 2.34 LINK O GLU A 208 CA CA A 306 1555 1555 2.38 LINK NE2 HIS A 226 ZN ZN A 302 1555 1555 2.06 LINK NE2 HIS A 230 ZN ZN A 302 1555 1555 2.11 LINK NE2 HIS A 236 ZN ZN A 302 1555 1555 2.08 LINK O8 N73 A 301 ZN ZN A 302 1555 1555 2.16 LINK OA8 N73 A 301 ZN ZN A 302 1555 1555 2.31 LINK CA CA A 305 O HOH A 415 1555 1555 2.29 LINK CA CA A 305 O HOH A 452 1555 1555 2.31 LINK CA CA A 306 O HOH A 512 1555 1555 2.35 LINK CA CA A 306 O HOH A 515 1555 1555 2.42 SITE 1 AC1 16 LEU A 187 LEU A 188 ALA A 189 LEU A 222 SITE 2 AC1 16 HIS A 226 GLU A 227 HIS A 230 HIS A 236 SITE 3 AC1 16 LEU A 243 TYR A 245 PRO A 246 MET A 247 SITE 4 AC1 16 TYR A 248 ZN A 302 PGO A 315 HOH A 501 SITE 1 AC2 4 HIS A 226 HIS A 230 HIS A 236 N73 A 301 SITE 1 AC3 4 HIS A 175 ASP A 177 HIS A 190 HIS A 203 SITE 1 AC4 6 ASP A 182 GLY A 183 ASP A 185 LEU A 187 SITE 2 AC4 6 ASP A 205 GLU A 208 SITE 1 AC5 6 ASP A 165 GLY A 197 GLN A 199 ASP A 201 SITE 2 AC5 6 HOH A 415 HOH A 452 SITE 1 AC6 5 ASP A 131 ASP A 206 GLU A 208 HOH A 512 SITE 2 AC6 5 HOH A 515 SITE 1 AC7 3 HIS A 190 ALA A 191 PHE A 192 SITE 1 AC8 2 THR A 157 ASP A 182 SITE 1 AC9 6 ILE A 125 GLN A 126 TYR A 128 ALA A 173 SITE 2 AC9 6 GLU A 174 HOH A 460 SITE 1 AD1 6 SER A 211 LEU A 212 GLY A 215 VAL A 216 SITE 2 AD1 6 HIS A 266 HOH A 495 SITE 1 AD2 4 HIS A 118 HIS A 119 ASN A 120 HOH A 407 SITE 1 AD3 2 LEU A 187 ASN A 262 SITE 1 AD4 8 ASP A 113 LYS A 115 TRP A 116 HIS A 117 SITE 2 AD4 8 HIS A 118 GLY A 195 HOH A 406 HOH A 436 SITE 1 AD5 5 ARG A 162 GLY A 183 LYS A 184 ASP A 207 SITE 2 AD5 5 HOH A 537 SITE 1 AD6 5 PRO A 240 ALA A 242 ARG A 249 N73 A 301 SITE 2 AD6 5 HOH A 429 SITE 1 AD7 4 HIS A 117 GLU A 130 LEU A 132 PRO A 133 CRYST1 39.600 39.600 163.960 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025253 0.014580 0.000000 0.00000 SCALE2 0.000000 0.029159 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006099 0.00000