HEADER HYDROLASE 19-DEC-14 4XD5 TITLE PHOSPHOTRIESTERASE VARIANT R2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE VARIANT PTE-R2; COMPND 3 CHAIN: A, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PHOSPHOTRIESTERASE, ARYLESTERASE, EVOLUTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.CAMPBELL,M.KALTENBACH,N.TOKURIKI,C.J.JACKSON REVDAT 6 15-NOV-23 4XD5 1 REMARK REVDAT 5 27-SEP-23 4XD5 1 REMARK LINK REVDAT 4 26-OCT-16 4XD5 1 JRNL REVDAT 3 28-SEP-16 4XD5 1 JRNL REVDAT 2 07-SEP-16 4XD5 1 JRNL REVDAT 1 23-DEC-15 4XD5 0 JRNL AUTH E.CAMPBELL,M.KALTENBACH,G.J.CORREY,P.D.CARR,B.T.POREBSKI, JRNL AUTH 2 E.K.LIVINGSTONE,L.AFRIAT-JURNOU,A.M.BUCKLE,M.WEIK, JRNL AUTH 3 F.HOLLFELDER,N.TOKURIKI,C.J.JACKSON JRNL TITL THE ROLE OF PROTEIN DYNAMICS IN THE EVOLUTION OF NEW ENZYME JRNL TITL 2 FUNCTION. JRNL REF NAT.CHEM.BIOL. V. 12 944 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 27618189 JRNL DOI 10.1038/NCHEMBIO.2175 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 50984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2036 - 4.8465 0.99 3162 180 0.1634 0.1727 REMARK 3 2 4.8465 - 3.8475 1.00 3015 172 0.1325 0.1572 REMARK 3 3 3.8475 - 3.3614 1.00 3021 168 0.1417 0.1827 REMARK 3 4 3.3614 - 3.0541 1.00 2999 145 0.1555 0.1968 REMARK 3 5 3.0541 - 2.8352 1.00 2993 157 0.1572 0.2109 REMARK 3 6 2.8352 - 2.6681 1.00 2945 177 0.1611 0.1943 REMARK 3 7 2.6681 - 2.5345 1.00 2958 152 0.1647 0.2267 REMARK 3 8 2.5345 - 2.4242 1.00 2970 153 0.1681 0.2211 REMARK 3 9 2.4242 - 2.3309 1.00 2947 161 0.1617 0.2476 REMARK 3 10 2.3309 - 2.2504 1.00 2967 134 0.1691 0.2419 REMARK 3 11 2.2504 - 2.1801 1.00 2962 150 0.1731 0.2379 REMARK 3 12 2.1801 - 2.1178 0.98 2865 146 0.1719 0.2269 REMARK 3 13 2.1178 - 2.0620 0.89 2619 126 0.1880 0.2363 REMARK 3 14 2.0620 - 2.0117 0.82 2419 127 0.1817 0.2578 REMARK 3 15 2.0117 - 1.9660 0.76 2232 113 0.1794 0.2432 REMARK 3 16 1.9660 - 1.9241 0.68 1992 99 0.2020 0.2349 REMARK 3 17 1.9241 - 1.8856 0.60 1748 113 0.2174 0.3021 REMARK 3 18 1.8856 - 1.8500 0.55 1606 91 0.2307 0.2899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5543 REMARK 3 ANGLE : 1.082 7576 REMARK 3 CHIRALITY : 0.042 879 REMARK 3 PLANARITY : 0.005 993 REMARK 3 DIHEDRAL : 13.727 2069 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 44.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.04763 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.24500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GY0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NACACODYLATE 30% 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.85200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.93450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.85200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.93450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -156.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH G 536 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 SER A 365 REMARK 465 MET G 33 REMARK 465 ARG G 363 REMARK 465 ALA G 364 REMARK 465 SER G 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH G 642 O HOH G 689 2.12 REMARK 500 O HOH G 555 O HOH G 641 2.16 REMARK 500 O HOH G 624 O HOH G 639 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH G 541 O HOH G 666 4456 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 -37.14 -135.03 REMARK 500 SER A 61 -149.04 -141.22 REMARK 500 TRP A 69 58.53 -145.90 REMARK 500 THR A 128 -168.98 -111.79 REMARK 500 TRP A 131 -148.22 -94.81 REMARK 500 GLU A 159 -136.29 57.40 REMARK 500 VAL A 176 116.70 76.23 REMARK 500 SER A 258 95.63 -64.85 REMARK 500 ILE A 260 117.86 67.82 REMARK 500 LEU A 262 67.89 -119.25 REMARK 500 ALA A 266 34.42 -93.27 REMARK 500 SER A 267 -0.38 -165.03 REMARK 500 LEU A 272 -163.36 -120.24 REMARK 500 PHE A 306 89.57 -154.10 REMARK 500 SER A 308 44.12 -86.45 REMARK 500 SER G 61 -145.91 -144.14 REMARK 500 TRP G 69 56.91 -141.17 REMARK 500 VAL G 101 30.29 -91.02 REMARK 500 THR G 128 -165.16 -108.95 REMARK 500 TRP G 131 -149.51 -95.65 REMARK 500 GLU G 159 -127.66 54.41 REMARK 500 PHE G 306 88.62 -153.86 REMARK 500 SER G 308 41.83 -84.77 REMARK 500 SER G 308 39.89 -83.27 REMARK 500 VAL G 351 -57.27 -120.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 116.1 REMARK 620 3 KCX A 169 OQ2 95.4 86.5 REMARK 620 4 ASP A 301 OD1 87.3 92.4 177.3 REMARK 620 5 CAC A2403 O1 120.3 123.6 89.6 89.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ1 REMARK 620 2 HIS A 201 ND1 104.4 REMARK 620 3 HIS A 230 NE2 110.7 93.9 REMARK 620 4 CAC A2403 O1 95.5 151.0 98.6 REMARK 620 5 CAC A2403 O2 110.1 84.6 138.2 68.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 55 NE2 REMARK 620 2 HIS G 57 NE2 120.7 REMARK 620 3 KCX G 169 OQ2 93.5 91.7 REMARK 620 4 ASP G 301 OD1 85.4 91.3 176.9 REMARK 620 5 CAC G 401 O1 117.4 121.7 89.8 88.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX G 169 OQ1 REMARK 620 2 HIS G 201 ND1 102.0 REMARK 620 3 HIS G 230 NE2 108.1 101.8 REMARK 620 4 CAC G 401 O2 108.8 90.1 137.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 2404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 2405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC G 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD G 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PBE RELATED DB: PDB REMARK 900 RELATED ID: 4PBF RELATED DB: PDB REMARK 900 RELATED ID: 4PCN RELATED DB: PDB REMARK 900 RELATED ID: 4PCP RELATED DB: PDB REMARK 900 RELATED ID: 4XD3 RELATED DB: PDB REMARK 900 RELATED ID: 4XD4 RELATED DB: PDB REMARK 900 RELATED ID: 4XD6 RELATED DB: PDB REMARK 900 RELATED ID: 4XAF RELATED DB: PDB REMARK 900 RELATED ID: 4XAG RELATED DB: PDB REMARK 900 RELATED ID: 4XAY RELATED DB: PDB REMARK 900 RELATED ID: 4XAZ RELATED DB: PDB DBREF1 4XD5 A 33 365 UNP A0A060GSW5_BREDI DBREF2 4XD5 A A0A060GSW5 1 333 DBREF1 4XD5 G 33 365 UNP A0A060GSW5_BREDI DBREF2 4XD5 G A0A060GSW5 1 333 SEQRES 1 A 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 A 333 ILE SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 A 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 A 333 PHE PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL SEQRES 5 A 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 A 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 A 333 SER LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 A 333 ILE VAL ALA ALA THR GLY LEU TRP LEU ASP PRO PRO LEU SEQRES 9 A 333 SER MET ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 A 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 A 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS SEQRES 12 A 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 A 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL THR THR HIS SEQRES 14 A 333 THR ALA ALA SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 A 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 A 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 A 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 A 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 A 333 SER ALA SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR SEQRES 20 A 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 A 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 A 333 PHE SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP SEQRES 23 A 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 A 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 A 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 A 333 LEU SER PRO THR LEU ARG ALA SER SEQRES 1 G 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 G 333 ILE SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 G 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 G 333 PHE PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL SEQRES 5 G 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 G 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 G 333 SER LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 G 333 ILE VAL ALA ALA THR GLY LEU TRP LEU ASP PRO PRO LEU SEQRES 9 G 333 SER MET ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 G 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 G 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS SEQRES 12 G 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 G 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL THR THR HIS SEQRES 14 G 333 THR ALA ALA SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 G 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 G 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 G 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 G 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 G 333 SER ALA SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR SEQRES 20 G 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 G 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 G 333 PHE SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP SEQRES 23 G 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 G 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 G 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 G 333 LEU SER PRO THR LEU ARG ALA SER MODRES 4XD5 KCX A 169 LYS MODIFIED RESIDUE MODRES 4XD5 KCX G 169 LYS MODIFIED RESIDUE HET KCX A 169 12 HET KCX G 169 12 HET ZN A2401 1 HET ZN A2402 1 HET CAC A2403 5 HET MPD A2404 8 HET MPD A2405 8 HET CAC G 401 5 HET ZN G 402 1 HET ZN G 403 1 HET MPD G 404 8 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM CAC CACODYLATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN CAC DIMETHYLARSINATE FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CAC 2(C2 H6 AS O2 1-) FORMUL 6 MPD 3(C6 H14 O2) FORMUL 12 HOH *384(H2 O) HELIX 1 AA1 ILE A 46 GLY A 50 1 5 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 LEU A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 ALA A 203 ARG A 207 5 5 HELIX 11 AB2 GLY A 208 GLU A 219 1 12 HELIX 12 AB3 SER A 222 SER A 224 5 3 HELIX 13 AB4 HIS A 230 THR A 234 5 5 HELIX 14 AB5 ASP A 236 ARG A 246 1 11 HELIX 15 AB6 ARG A 254 SER A 258 5 5 HELIX 16 AB7 SER A 276 GLN A 290 1 15 HELIX 17 AB8 TYR A 292 LYS A 294 5 3 HELIX 18 AB9 ASN A 312 ASN A 321 1 10 HELIX 19 AC1 ASP A 323 MET A 325 5 3 HELIX 20 AC2 ALA A 326 ARG A 331 1 6 HELIX 21 AC3 ARG A 331 LYS A 339 1 9 HELIX 22 AC4 PRO A 342 VAL A 351 1 10 HELIX 23 AC5 VAL A 351 SER A 359 1 9 HELIX 24 AC6 SER G 47 ALA G 49 5 3 HELIX 25 AC7 GLY G 64 TRP G 69 1 6 HELIX 26 AC8 PRO G 70 GLY G 74 5 5 HELIX 27 AC9 SER G 75 ALA G 93 1 19 HELIX 28 AD1 THR G 103 GLY G 107 5 5 HELIX 29 AD2 ASP G 109 ASP G 121 1 13 HELIX 30 AD3 PRO G 135 LEU G 140 1 6 HELIX 31 AD4 SER G 142 TYR G 156 1 15 HELIX 32 AD5 THR G 177 GLY G 195 1 19 HELIX 33 AD6 ALA G 203 GLN G 206 5 4 HELIX 34 AD7 ARG G 207 GLU G 219 1 13 HELIX 35 AD8 SER G 222 SER G 224 5 3 HELIX 36 AD9 HIS G 230 THR G 234 5 5 HELIX 37 AE1 ASP G 236 ARG G 246 1 11 HELIX 38 AE2 ASN G 265 GLY G 273 1 9 HELIX 39 AE3 SER G 276 GLN G 290 1 15 HELIX 40 AE4 TYR G 292 LYS G 294 5 3 HELIX 41 AE5 ASN G 312 ASN G 321 1 10 HELIX 42 AE6 ASP G 323 MET G 325 5 3 HELIX 43 AE7 ALA G 326 ARG G 331 1 6 HELIX 44 AE8 ARG G 331 LYS G 339 1 9 HELIX 45 AE9 PRO G 342 VAL G 351 1 10 HELIX 46 AF1 VAL G 351 SER G 359 1 9 SHEET 1 AA1 2 ARG A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 8 THR A 52 GLU A 56 0 SHEET 2 AA2 8 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 8 HIS A 123 LEU A 130 1 O VAL A 125 N ASP A 100 SHEET 4 AA2 8 ILE A 167 ALA A 171 1 O KCX A 169 N THR A 128 SHEET 5 AA2 8 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 6 AA2 8 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 7 AA2 8 LEU A 249 LEU A 252 1 O LEU A 249 N VAL A 226 SHEET 8 AA2 8 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 2 ARG G 36 THR G 39 0 SHEET 2 AA4 2 GLY G 42 THR G 45 -1 O ILE G 44 N ILE G 37 SHEET 1 AA5 3 THR G 52 GLU G 56 0 SHEET 2 AA5 3 THR G 97 ASP G 100 1 O VAL G 99 N LEU G 53 SHEET 3 AA5 3 HIS G 123 VAL G 125 1 O VAL G 125 N ASP G 100 SHEET 1 AA6 2 CYS G 59 GLY G 60 0 SHEET 2 AA6 2 GLY G 305 PHE G 306 1 O GLY G 305 N GLY G 60 SHEET 1 AA7 6 ALA G 127 LEU G 130 0 SHEET 2 AA7 6 ILE G 167 ALA G 171 1 O KCX G 169 N THR G 128 SHEET 3 AA7 6 VAL G 198 HIS G 201 1 O THR G 199 N ILE G 168 SHEET 4 AA7 6 VAL G 226 ILE G 228 1 O CYS G 227 N VAL G 198 SHEET 5 AA7 6 LEU G 249 LEU G 252 1 O LEU G 249 N VAL G 226 SHEET 6 AA7 6 ILE G 296 VAL G 298 1 O LEU G 297 N LEU G 252 LINK C ILE A 168 N KCX A 169 1555 1555 1.33 LINK C KCX A 169 N VAL A 170 1555 1555 1.33 LINK C ILE G 168 N KCX G 169 1555 1555 1.33 LINK C KCX G 169 N VAL G 170 1555 1555 1.33 LINK NE2 HIS A 55 ZN ZN A2401 1555 1555 2.09 LINK NE2 HIS A 57 ZN ZN A2401 1555 1555 2.08 LINK OQ2 KCX A 169 ZN ZN A2401 1555 1555 2.20 LINK OQ1 KCX A 169 ZN ZN A2402 1555 1555 1.95 LINK ND1 HIS A 201 ZN ZN A2402 1555 1555 2.21 LINK NE2 HIS A 230 ZN ZN A2402 1555 1555 2.09 LINK OD1 ASP A 301 ZN ZN A2401 1555 1555 2.16 LINK ZN ZN A2401 O1 CAC A2403 1555 1555 1.95 LINK ZN ZN A2402 O1 CAC A2403 1555 1555 2.65 LINK ZN ZN A2402 O2 CAC A2403 1555 1555 2.14 LINK NE2 HIS G 55 ZN ZN G 402 1555 1555 2.13 LINK NE2 HIS G 57 ZN ZN G 402 1555 1555 2.07 LINK OQ2 KCX G 169 ZN ZN G 402 1555 1555 2.11 LINK OQ1 KCX G 169 ZN ZN G 403 1555 1555 1.95 LINK ND1 HIS G 201 ZN ZN G 403 1555 1555 2.11 LINK NE2 HIS G 230 ZN ZN G 403 1555 1555 2.13 LINK OD1 ASP G 301 ZN ZN G 402 1555 1555 2.23 LINK O1 CAC G 401 ZN ZN G 402 1555 1555 1.88 LINK O2 CAC G 401 ZN ZN G 403 1555 1555 2.15 SITE 1 AC1 5 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC1 5 CAC A2403 SITE 1 AC2 5 KCX A 169 HIS A 201 HIS A 230 ARG A 254 SITE 2 AC2 5 CAC A2403 SITE 1 AC3 10 HIS A 55 HIS A 57 TRP A 131 KCX A 169 SITE 2 AC3 10 HIS A 201 HIS A 230 ARG A 254 ASP A 301 SITE 3 AC3 10 ZN A2401 ZN A2402 SITE 1 AC4 3 PHE A 51 ARG A 337 GLN A 343 SITE 1 AC5 4 TRP A 69 HOH A2679 GLU G 145 GLN G 148 SITE 1 AC6 10 HIS G 55 HIS G 57 TRP G 131 KCX G 169 SITE 2 AC6 10 HIS G 201 HIS G 230 ARG G 254 ASP G 301 SITE 3 AC6 10 ZN G 402 ZN G 403 SITE 1 AC7 5 HIS G 55 HIS G 57 KCX G 169 ASP G 301 SITE 2 AC7 5 CAC G 401 SITE 1 AC8 5 KCX G 169 HIS G 201 HIS G 230 ARG G 254 SITE 2 AC8 5 CAC G 401 SITE 1 AC9 5 PHE G 51 GLN G 343 ALA G 347 THR G 350 SITE 2 AC9 5 VAL G 351 CRYST1 85.704 85.869 88.382 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011315 0.00000